Wall clock time and date at job start Tue Mar 31 2020 08:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 N 1.46502 * 109.47276 * 179.97438 * 3 2 1 5 5 C 1.34771 * 120.00268 * 269.99661 * 4 3 2 6 6 O 1.21688 * 119.99985 * 179.97438 * 5 4 3 7 7 C 1.46377 * 119.99787 * 0.02562 * 5 4 3 8 8 H 1.07993 * 120.00356 * 359.97438 * 7 5 4 9 9 C 1.40052 * 119.99672 * 179.97438 * 7 5 4 10 10 N 1.30666 * 120.00084 * 359.97438 * 9 7 5 11 11 Si 1.86798 * 119.99934 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47169 * 89.99796 * 11 9 7 13 13 H 1.48492 * 109.47528 * 210.00216 * 11 9 7 14 14 H 1.48506 * 109.46914 * 330.00114 * 11 9 7 15 15 C 1.46499 * 119.99792 * 89.99779 * 4 3 2 16 16 H 1.09001 * 109.47465 * 180.02562 * 15 4 3 17 17 C 1.53001 * 109.47480 * 300.00270 * 15 4 3 18 18 C 1.50705 * 109.47420 * 60.00059 * 15 4 3 19 19 C 1.33997 * 124.92353 * 139.99782 * 18 15 4 20 20 C 1.46785 * 106.18379 * 179.97438 * 19 18 15 21 21 C 1.39402 * 134.36782 * 179.97438 * 20 19 18 22 22 C 1.36738 * 119.71519 * 179.97438 * 21 20 19 23 23 C 1.38742 * 120.41803 * 0.02562 * 22 21 20 24 24 C 1.37855 * 120.68496 * 0.02562 * 23 22 21 25 25 C 1.38938 * 119.81787 * 359.97438 * 24 23 22 26 26 O 1.34451 * 124.92103 * 319.97775 * 18 15 4 27 27 H 1.08995 * 109.47605 * 60.00239 * 1 2 3 28 28 H 1.09006 * 109.47317 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47406 * 299.99941 * 1 2 3 30 30 H 1.08995 * 109.47588 * 239.99573 * 2 1 3 31 31 H 1.09007 * 109.47361 * 119.99467 * 2 1 3 32 32 H 1.08999 * 109.47527 * 60.00050 * 3 2 1 33 33 H 1.08999 * 109.47092 * 299.99695 * 3 2 1 34 34 H 0.97007 * 120.00033 * 179.97438 * 10 9 7 35 35 H 1.08995 * 109.47258 * 59.99888 * 17 15 4 36 36 H 1.09000 * 109.47728 * 180.02562 * 17 15 4 37 37 H 1.09002 * 109.47083 * 300.00255 * 17 15 4 38 38 H 1.07996 * 126.90761 * 0.02562 * 19 18 15 39 39 H 1.08001 * 120.14630 * 0.02892 * 21 20 19 40 40 H 1.08002 * 119.79100 * 180.02562 * 22 21 20 41 41 H 1.08004 * 119.66016 * 179.97438 * 23 22 21 42 42 H 1.07999 * 120.08968 * 179.70288 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1784 1.4428 1.1680 6 8 5.3952 1.4423 1.1685 7 6 3.4459 1.4424 2.4354 8 1 2.3660 1.4424 2.4350 9 6 4.1458 1.4422 3.6485 10 7 5.4524 1.4417 3.6490 11 14 3.2112 1.4425 5.2659 12 1 2.9630 0.0425 5.6944 13 1 4.0135 2.1422 6.3011 14 1 1.9139 2.1430 5.0878 15 6 4.2379 1.4423 -1.2678 16 1 5.3095 1.4419 -1.0683 17 6 3.8686 0.1929 -2.0701 18 6 3.8742 2.6726 -2.0585 19 6 4.7370 3.4090 -2.7718 20 6 3.9516 4.4962 -3.3682 21 6 4.2530 5.5744 -4.1987 22 6 3.2594 6.4303 -4.5858 23 6 1.9549 6.2321 -4.1568 24 6 1.6381 5.1721 -3.3345 25 6 2.6328 4.2906 -2.9295 26 8 2.6367 3.1903 -2.1507 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 5.9372 1.4419 4.4893 35 1 2.7971 0.1929 -2.2697 36 1 4.4143 0.1925 -3.0137 37 1 4.1317 -0.6970 -1.4983 38 1 5.7971 3.2367 -2.8857 39 1 5.2668 5.7326 -4.5357 40 1 3.4914 7.2658 -5.2296 41 1 1.1797 6.9160 -4.4698 42 1 0.6204 5.0297 -3.0024 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274675704.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:59 Heat of formation + Delta-G solvation = -31.637630 kcal Electronic energy + Delta-G solvation = -24805.045724 eV Core-core repulsion = 21329.603191 eV Total energy + Delta-G solvation = -3475.442533 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.46747 -40.14091 -38.74314 -36.93366 -35.03458 -34.47204 -33.38911 -31.98328 -31.32483 -29.56151 -28.29158 -26.91516 -25.02723 -23.67487 -22.87025 -22.34631 -22.12776 -20.78757 -18.56938 -18.40909 -17.87443 -17.63546 -17.16815 -16.56473 -16.45759 -15.81007 -15.37561 -15.22807 -14.95942 -14.65667 -14.44879 -14.23250 -14.04581 -13.90344 -13.57631 -13.35913 -13.21066 -13.07837 -12.88608 -12.79028 -12.76436 -12.58191 -12.29913 -12.14482 -12.03299 -11.89829 -11.84817 -11.32251 -11.06173 -10.94110 -9.82714 -9.56143 -9.23665 -9.10076 -8.30499 -6.85042 -0.03633 0.42702 1.32839 1.37694 1.38990 1.53647 1.69317 2.21579 2.43788 2.72522 2.79939 3.32803 3.61510 3.73436 4.00503 4.08865 4.14646 4.16784 4.16799 4.29814 4.40025 4.41722 4.51723 4.58906 4.66641 4.69892 4.75501 4.85204 4.89742 4.93971 5.08401 5.11072 5.23520 5.29578 5.35281 5.36588 5.38429 5.47901 5.52147 5.55416 5.76096 5.78613 6.10186 6.20217 6.38860 6.86544 7.35009 8.42867 8.64683 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.004397 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.218992 B = 6366.881356 C = 6705.273702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.140 4.140 3 C 0.127 3.873 4 N -0.633 5.633 5 C 0.542 3.458 6 O -0.628 6.628 7 C -0.560 4.560 8 H 0.089 0.911 9 C 0.031 3.969 10 N -0.819 5.819 11 Si 0.990 3.010 12 H -0.259 1.259 13 H -0.273 1.273 14 H -0.250 1.250 15 C 0.212 3.788 16 H 0.093 0.907 17 C -0.145 4.145 18 C 0.033 3.967 19 C -0.223 4.223 20 C -0.149 4.149 21 C -0.086 4.086 22 C -0.133 4.133 23 C -0.090 4.090 24 C -0.119 4.119 25 C 0.015 3.985 26 O -0.195 6.195 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.274 0.726 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.164 0.836 39 H 0.142 0.858 40 H 0.163 0.837 41 H 0.171 0.829 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.309 5.405 -14.978 18.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.178 4.178 3 C 0.004 3.996 4 N -0.367 5.367 5 C 0.349 3.651 6 O -0.516 6.516 7 C -0.596 4.596 8 H 0.107 0.893 9 C -0.184 4.184 10 N -0.448 5.448 11 Si 0.809 3.191 12 H -0.184 1.184 13 H -0.198 1.198 14 H -0.174 1.174 15 C 0.107 3.893 16 H 0.111 0.889 17 C -0.203 4.203 18 C -0.016 4.016 19 C -0.243 4.243 20 C -0.150 4.150 21 C -0.104 4.104 22 C -0.151 4.151 23 C -0.108 4.108 24 C -0.137 4.137 25 C -0.032 4.032 26 O -0.097 6.097 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.080 0.920 38 H 0.182 0.818 39 H 0.160 0.840 40 H 0.180 0.820 41 H 0.188 0.812 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.732 5.297 -14.759 18.455 hybrid contribution 0.450 -0.169 0.990 1.101 sum -9.282 5.128 -13.769 17.379 Atomic orbital electron populations 1.21645 0.93636 1.02364 1.02074 1.22038 0.97216 0.96757 1.01817 1.21488 0.79307 0.97129 1.01694 1.47970 1.06536 1.78350 1.03888 1.18650 0.86593 0.75809 0.84032 1.90538 1.16072 1.57663 1.87292 1.21435 0.94644 1.53927 0.89611 0.89311 1.26934 0.95470 0.91296 1.04734 1.70183 1.09426 1.36387 1.28830 0.85127 0.78879 0.79550 0.75495 1.18392 1.19818 1.17357 1.19492 0.97830 0.88987 0.82977 0.88879 1.22188 1.02920 0.95356 0.99826 1.23095 0.82068 0.97623 0.98777 1.22469 1.00721 0.96891 1.04229 1.20215 0.93156 0.98843 1.02781 1.20627 1.01354 0.92500 0.95922 1.21209 0.92406 1.00225 1.01221 1.21400 0.97938 0.95986 0.95458 1.20356 0.97963 0.94237 1.01125 1.20369 0.96958 0.89949 0.95944 1.84006 1.30859 1.36543 1.58270 0.91817 0.91470 0.92852 0.91273 0.93661 0.92073 0.90478 0.91629 0.90878 0.89825 0.91963 0.81810 0.84028 0.81971 0.81153 0.83608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.91 71.98 0.71 -2.84 16 2 C -0.14 -4.65 5.98 30.59 0.18 -4.47 16 3 C 0.13 4.96 4.44 86.38 0.38 5.34 16 4 N -0.63 -29.71 2.39 -807.06 -1.93 -31.64 16 5 C 0.54 31.90 7.61 86.36 0.66 32.56 16 6 O -0.63 -42.26 14.35 -4.31 -0.06 -42.32 16 7 C -0.56 -31.98 8.74 24.83 0.22 -31.76 16 8 H 0.09 4.62 6.00 -2.91 -0.02 4.60 16 9 C 0.03 1.74 5.50 85.31 0.47 2.21 16 10 N -0.82 -50.41 11.83 21.84 0.26 -50.15 16 11 Si 0.99 41.44 29.56 68.60 2.03 43.47 16 12 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 13 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 14 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 15 C 0.21 8.73 3.09 44.25 0.14 8.87 16 16 H 0.09 4.36 6.87 -2.39 -0.02 4.34 16 17 C -0.15 -4.66 8.12 71.98 0.58 -4.07 16 18 C 0.03 1.27 6.01 24.72 0.15 1.42 16 19 C -0.22 -7.84 10.99 23.54 0.26 -7.58 16 20 C -0.15 -4.75 6.40 -20.21 -0.13 -4.88 16 21 C -0.09 -2.08 10.05 22.20 0.22 -1.86 16 22 C -0.13 -2.45 9.98 22.04 0.22 -2.23 16 23 C -0.09 -1.64 10.01 22.30 0.22 -1.41 16 24 C -0.12 -2.89 10.07 22.35 0.23 -2.66 16 25 C 0.01 0.47 7.42 22.99 0.17 0.65 16 26 O -0.19 -7.20 7.86 -8.90 -0.07 -7.27 16 27 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.07 2.15 5.44 -2.39 -0.01 2.14 16 31 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.06 2.57 6.09 -2.39 -0.01 2.56 16 33 H 0.08 2.80 5.36 -2.39 -0.01 2.79 16 34 H 0.27 15.30 8.29 -92.70 -0.77 14.53 16 35 H 0.07 2.16 6.17 -2.39 -0.01 2.15 16 36 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.16 5.16 8.06 -2.91 -0.02 5.13 16 39 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 40 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 41 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 42 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -78.08 344.98 5.94 -72.14 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 1.03 Total: 28.50 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 4.68 Total: -12.72 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -1.67 Total: -81.79 kcal Atomic # 8 Polarization: -49.46 SS G_CDS: -0.13 Total: -49.59 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -78.08 5.94 -72.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274675704.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.502 kcal (2) G-P(sol) polarization free energy of solvation -78.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds