Wall clock time and date at job start Tue Mar 31 2020 08:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46953 * 169.28853 * 3 2 1 5 5 C 1.36903 * 119.99508 * 96.83555 * 4 3 2 6 6 H 1.08001 * 119.99416 * 146.61663 * 5 4 3 7 7 C 1.39025 * 120.00456 * 326.61252 * 5 4 3 8 8 N 1.31380 * 119.99784 * 344.86475 * 7 5 4 9 9 Si 1.86798 * 119.99983 * 164.85800 * 7 5 4 10 10 H 1.48509 * 109.47322 * 60.00284 * 9 7 5 11 11 H 1.48497 * 109.47426 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47497 * 300.00361 * 9 7 5 13 13 C 1.34775 * 120.00283 * 276.84145 * 4 3 2 14 14 O 1.21613 * 119.99795 * 183.99980 * 13 4 3 15 15 C 1.47494 * 119.99693 * 3.99089 * 13 4 3 16 16 C 1.39804 * 120.09599 * 307.32699 * 15 13 4 17 17 C 1.37680 * 119.90430 * 179.69877 * 16 15 13 18 18 C 1.39009 * 120.09468 * 0.60011 * 17 16 15 19 19 O 1.35717 * 119.90976 * 179.69481 * 18 17 16 20 20 C 1.42897 * 117.00480 * 181.38809 * 19 18 17 21 21 H 1.08997 * 109.46735 * 34.93928 * 20 19 18 22 22 C 1.53001 * 109.46918 * 274.94185 * 20 19 18 23 23 C 1.52996 * 109.47087 * 154.93943 * 20 19 18 24 24 C 1.53003 * 109.47405 * 295.00290 * 23 20 19 25 25 C 1.39010 * 120.18730 * 359.67716 * 18 17 16 26 26 C 1.37682 * 120.09523 * 0.02562 * 25 18 17 27 27 H 4.40648 * 5.51421 * 179.97438 * 4 1 2 28 28 H 1.08994 * 109.47151 * 49.29013 * 3 2 1 29 29 H 1.09000 * 109.47035 * 289.28752 * 3 2 1 30 30 H 0.97007 * 119.99527 * 179.97438 * 8 7 5 31 31 H 1.08002 * 120.04431 * 0.02562 * 16 15 13 32 32 H 1.08003 * 119.95477 * 180.30204 * 17 16 15 33 33 H 1.08997 * 109.46998 * 60.00097 * 22 20 19 34 34 H 1.09008 * 109.46851 * 180.02562 * 22 20 19 35 35 H 1.08997 * 109.47208 * 299.99453 * 22 20 19 36 36 H 1.09002 * 109.47285 * 55.00389 * 23 20 19 37 37 H 1.09001 * 109.46902 * 174.99884 * 23 20 19 38 38 H 1.09003 * 109.46781 * 299.99770 * 24 23 20 39 39 H 1.08993 * 109.46914 * 60.00290 * 24 23 20 40 40 H 1.08997 * 109.46956 * 179.97438 * 24 23 20 41 41 H 1.08006 * 119.94865 * 180.02562 * 25 18 17 42 42 H 1.07999 * 120.04935 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.3580 -0.2567 5 6 3.4946 2.1648 0.7888 6 1 4.3001 2.8744 0.6703 7 6 2.8240 2.0709 2.0030 8 7 1.6728 1.4415 2.0707 9 14 3.5600 2.8393 3.5383 10 1 3.7234 4.3007 3.3310 11 1 2.6572 2.6006 4.6929 12 1 4.8851 2.2271 3.8119 13 6 3.2271 1.8126 -1.5221 14 8 3.6998 2.9116 -1.7400 15 6 2.7560 0.9769 -2.6424 16 6 3.2136 -0.3373 -2.7775 17 6 2.7665 -1.1159 -3.8212 18 6 1.8711 -0.5931 -4.7471 19 8 1.4377 -1.3620 -5.7781 20 6 0.5420 -0.7527 -6.7101 21 1 0.8053 0.2978 -6.8333 22 6 -0.8912 -0.8612 -6.1856 23 6 0.6469 -1.4664 -8.0593 24 6 2.0452 -1.2523 -8.6423 25 6 1.4181 0.7149 -4.6199 26 6 1.8554 1.4985 -3.5756 27 1 -1.0502 -0.0004 -0.0001 28 1 3.0097 -0.6694 -0.7789 29 1 3.0095 -0.3386 0.9700 30 1 1.2051 1.3756 2.9180 31 1 3.9126 -0.7428 -2.0610 32 1 3.1157 -2.1328 -3.9236 33 1 -0.9658 -0.3527 -5.2244 34 1 -1.5744 -0.3968 -6.8968 35 1 -1.1544 -1.9117 -6.0624 36 1 0.4704 -2.5331 -7.9208 37 1 -0.0982 -1.0608 -8.7437 38 1 2.2215 -0.1856 -8.7809 39 1 2.7902 -1.6579 -7.9580 40 1 2.1199 -1.7611 -9.6033 41 1 0.7221 1.1171 -5.3413 42 1 1.5033 2.5148 -3.4777 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281499619.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:46 Heat of formation + Delta-G solvation = 19.460811 kcal Electronic energy + Delta-G solvation = -24300.946697 eV Core-core repulsion = 20827.719958 eV Total energy + Delta-G solvation = -3473.226738 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.25523 -38.90634 -36.91542 -35.09800 -34.22303 -32.11384 -31.20885 -30.90113 -30.03080 -29.50841 -26.35782 -25.05443 -24.12070 -22.99511 -22.45436 -20.71297 -19.46713 -18.28643 -17.75382 -16.80832 -16.36369 -15.79657 -15.28645 -15.01674 -14.78279 -14.34189 -14.20580 -13.97851 -13.59230 -13.53934 -13.28491 -13.12532 -12.97372 -12.42342 -12.26762 -12.13300 -11.94362 -11.78509 -11.57119 -11.52377 -11.28990 -11.01611 -10.97722 -10.60339 -10.55513 -10.41195 -10.37823 -9.30154 -9.13968 -8.91164 -8.64932 -8.45462 -7.82835 -7.67966 -6.27102 -3.97047 1.55826 1.68846 3.18943 3.22405 3.24839 3.27676 3.68023 3.86557 4.15698 4.21444 4.30828 4.47468 4.70084 4.81148 4.94136 5.00702 5.06113 5.14153 5.15230 5.28445 5.36636 5.43819 5.51330 5.63153 5.65560 5.67805 5.70951 5.78511 5.89699 5.95999 6.00361 6.08369 6.27993 6.34625 6.53854 6.61620 6.64007 6.91187 6.98208 7.09150 7.54928 7.59988 8.15314 8.42924 8.96422 9.11671 9.31621 9.91004 10.70084 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.029068 B = 0.003562 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.013374 B = 7857.959074 C = 8241.692305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.109 4.109 3 C 0.220 3.780 4 N -0.430 5.430 5 C -0.321 4.321 6 H 0.098 0.902 7 C 0.037 3.963 8 N -0.853 5.853 9 Si 0.923 3.077 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.498 3.502 14 O -0.575 6.575 15 C -0.123 4.123 16 C -0.066 4.066 17 C -0.155 4.155 18 C 0.129 3.871 19 O -0.309 6.309 20 C 0.079 3.921 21 H 0.075 0.925 22 C -0.181 4.181 23 C -0.118 4.118 24 C -0.154 4.154 25 C -0.213 4.213 26 C -0.040 4.040 27 H 0.195 0.805 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.269 0.731 31 H 0.136 0.864 32 H 0.129 0.871 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.127 0.873 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.744 -8.707 -14.716 17.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.111 4.111 3 C 0.098 3.902 4 N -0.147 5.147 5 C -0.448 4.448 6 H 0.116 0.884 7 C -0.169 4.169 8 N -0.489 5.489 9 Si 0.749 3.251 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.286 3.714 14 O -0.459 6.459 15 C -0.127 4.127 16 C -0.085 4.085 17 C -0.174 4.174 18 C 0.084 3.916 19 O -0.223 6.223 20 C 0.022 3.978 21 H 0.092 0.908 22 C -0.238 4.238 23 C -0.155 4.155 24 C -0.212 4.212 25 C -0.231 4.231 26 C -0.059 4.059 27 H 0.213 0.787 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.154 0.846 32 H 0.147 0.853 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.145 0.855 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.581 -8.399 -14.670 17.280 hybrid contribution -0.384 0.577 0.996 1.214 sum -3.965 -7.822 -13.674 16.244 Atomic orbital electron populations 1.24123 0.95225 1.02637 1.05641 1.22939 0.94175 0.97895 0.96094 1.18543 0.84855 0.85314 1.01515 1.43464 1.55659 1.11200 1.04410 1.19489 1.16483 1.19776 0.89065 0.88438 1.25494 0.94401 0.97096 0.99912 1.70020 1.11711 1.40830 1.26344 0.86064 0.78758 0.79834 0.80427 1.19763 1.21033 1.19796 1.18098 0.84033 0.86174 0.83055 1.90627 1.49106 1.21941 1.84259 1.20191 1.00006 0.94733 0.97750 1.21173 0.98414 0.92562 0.96320 1.20230 1.00685 1.00884 0.95567 1.19034 0.94376 0.89797 0.88399 1.86033 1.61098 1.39950 1.35236 1.22480 0.88971 0.97820 0.88499 0.90760 1.22366 0.95731 1.03346 1.02354 1.21620 0.98472 1.01616 0.93794 1.21764 0.96911 1.01742 1.00748 1.21088 1.05993 0.94213 1.01824 1.20863 0.94008 0.99204 0.91811 0.78746 0.90599 0.88704 0.92067 0.84644 0.85329 0.91478 0.91239 0.91517 0.90879 0.90275 0.92778 0.91830 0.92610 0.85523 0.85629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.57 19.11 29.55 0.56 -5.00 16 2 C -0.11 -2.51 10.75 -37.12 -0.40 -2.91 16 3 C 0.22 4.90 4.86 -6.83 -0.03 4.87 16 4 N -0.43 -10.98 2.55 -119.14 -0.30 -11.29 16 5 C -0.32 -8.84 9.02 -15.00 -0.14 -8.97 16 6 H 0.10 2.79 7.60 -52.49 -0.40 2.39 16 7 C 0.04 0.97 4.96 -17.45 -0.09 0.88 16 8 N -0.85 -22.68 9.74 55.50 0.54 -22.13 16 9 Si 0.92 20.49 29.58 -169.99 -5.03 15.46 16 10 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 13 C 0.50 12.59 7.07 -12.49 -0.09 12.50 16 14 O -0.58 -16.53 16.86 5.27 0.09 -16.44 16 15 C -0.12 -2.54 4.88 -104.96 -0.51 -3.05 16 16 C -0.07 -1.14 7.83 -39.20 -0.31 -1.45 16 17 C -0.16 -2.37 9.97 -39.50 -0.39 -2.76 16 18 C 0.13 1.95 6.61 -39.01 -0.26 1.69 16 19 O -0.31 -4.09 9.32 -18.86 -0.18 -4.27 16 20 C 0.08 0.81 2.23 -26.73 -0.06 0.75 16 21 H 0.07 0.75 6.08 -51.93 -0.32 0.44 16 22 C -0.18 -1.70 9.22 37.16 0.34 -1.36 16 23 C -0.12 -0.96 5.64 -26.73 -0.15 -1.11 16 24 C -0.15 -1.29 9.81 37.16 0.36 -0.93 16 25 C -0.21 -3.28 8.29 -39.50 -0.33 -3.61 16 26 C -0.04 -0.74 9.74 -39.20 -0.38 -1.12 16 27 H 0.20 3.51 7.80 -54.08 -0.42 3.09 16 28 H 0.08 1.43 3.95 -51.93 -0.21 1.22 16 29 H 0.09 2.16 7.33 -51.93 -0.38 1.78 16 30 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.14 2.14 6.43 -52.49 -0.34 1.80 16 32 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 33 H 0.07 0.73 7.21 -51.93 -0.37 0.36 16 34 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.62 7.82 -51.93 -0.41 0.22 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.13 1.62 5.55 -52.48 -0.29 1.33 16 42 H 0.13 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 352.41 15.07 5.31 5.31 Total: -1.00 -32.10 352.41 -7.08 -39.18 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -5.65 Total: 5.76 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -1.86 Total: -11.58 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: 0.24 Total: -33.42 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.09 Total: -20.71 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.46 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.10 -7.08 -39.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281499619.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.639 kcal (2) G-P(sol) polarization free energy of solvation -32.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds