Wall clock time and date at job start Tue Mar 31 2020 08:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46953 * 169.28853 * 3 2 1 5 5 C 1.36903 * 119.99508 * 96.83555 * 4 3 2 6 6 H 1.08001 * 119.99416 * 146.61663 * 5 4 3 7 7 C 1.39025 * 120.00456 * 326.61252 * 5 4 3 8 8 N 1.31380 * 119.99784 * 344.86475 * 7 5 4 9 9 Si 1.86798 * 119.99983 * 164.85800 * 7 5 4 10 10 H 1.48509 * 109.47322 * 60.00284 * 9 7 5 11 11 H 1.48497 * 109.47426 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47497 * 300.00361 * 9 7 5 13 13 C 1.34775 * 120.00283 * 276.84145 * 4 3 2 14 14 O 1.21613 * 119.99795 * 183.99980 * 13 4 3 15 15 C 1.47494 * 119.99693 * 3.99089 * 13 4 3 16 16 C 1.39804 * 120.09599 * 307.32699 * 15 13 4 17 17 C 1.37680 * 119.90430 * 179.69877 * 16 15 13 18 18 C 1.39009 * 120.09468 * 0.60011 * 17 16 15 19 19 O 1.35717 * 119.90976 * 179.69481 * 18 17 16 20 20 C 1.42897 * 117.00480 * 181.38809 * 19 18 17 21 21 H 1.08997 * 109.46735 * 34.93928 * 20 19 18 22 22 C 1.53001 * 109.46918 * 274.94185 * 20 19 18 23 23 C 1.52996 * 109.47087 * 154.93943 * 20 19 18 24 24 C 1.53003 * 109.47405 * 295.00290 * 23 20 19 25 25 C 1.39010 * 120.18730 * 359.67716 * 18 17 16 26 26 C 1.37682 * 120.09523 * 0.02562 * 25 18 17 27 27 H 4.40648 * 5.51421 * 179.97438 * 4 1 2 28 28 H 1.08994 * 109.47151 * 49.29013 * 3 2 1 29 29 H 1.09000 * 109.47035 * 289.28752 * 3 2 1 30 30 H 0.97007 * 119.99527 * 179.97438 * 8 7 5 31 31 H 1.08002 * 120.04431 * 0.02562 * 16 15 13 32 32 H 1.08003 * 119.95477 * 180.30204 * 17 16 15 33 33 H 1.08997 * 109.46998 * 60.00097 * 22 20 19 34 34 H 1.09008 * 109.46851 * 180.02562 * 22 20 19 35 35 H 1.08997 * 109.47208 * 299.99453 * 22 20 19 36 36 H 1.09002 * 109.47285 * 55.00389 * 23 20 19 37 37 H 1.09001 * 109.46902 * 174.99884 * 23 20 19 38 38 H 1.09003 * 109.46781 * 299.99770 * 24 23 20 39 39 H 1.08993 * 109.46914 * 60.00290 * 24 23 20 40 40 H 1.08997 * 109.46956 * 179.97438 * 24 23 20 41 41 H 1.08006 * 119.94865 * 180.02562 * 25 18 17 42 42 H 1.07999 * 120.04935 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.3580 -0.2567 5 6 3.4946 2.1648 0.7888 6 1 4.3001 2.8744 0.6703 7 6 2.8240 2.0709 2.0030 8 7 1.6728 1.4415 2.0707 9 14 3.5600 2.8393 3.5383 10 1 3.7234 4.3007 3.3310 11 1 2.6572 2.6006 4.6929 12 1 4.8851 2.2271 3.8119 13 6 3.2271 1.8126 -1.5221 14 8 3.6998 2.9116 -1.7400 15 6 2.7560 0.9769 -2.6424 16 6 3.2136 -0.3373 -2.7775 17 6 2.7665 -1.1159 -3.8212 18 6 1.8711 -0.5931 -4.7471 19 8 1.4377 -1.3620 -5.7781 20 6 0.5420 -0.7527 -6.7101 21 1 0.8053 0.2978 -6.8333 22 6 -0.8912 -0.8612 -6.1856 23 6 0.6469 -1.4664 -8.0593 24 6 2.0452 -1.2523 -8.6423 25 6 1.4181 0.7149 -4.6199 26 6 1.8554 1.4985 -3.5756 27 1 -1.0502 -0.0004 -0.0001 28 1 3.0097 -0.6694 -0.7789 29 1 3.0095 -0.3386 0.9700 30 1 1.2051 1.3756 2.9180 31 1 3.9126 -0.7428 -2.0610 32 1 3.1157 -2.1328 -3.9236 33 1 -0.9658 -0.3527 -5.2244 34 1 -1.5744 -0.3968 -6.8968 35 1 -1.1544 -1.9117 -6.0624 36 1 0.4704 -2.5331 -7.9208 37 1 -0.0982 -1.0608 -8.7437 38 1 2.2215 -0.1856 -8.7809 39 1 2.7902 -1.6579 -7.9580 40 1 2.1199 -1.7611 -9.6033 41 1 0.7221 1.1171 -5.3413 42 1 1.5033 2.5148 -3.4777 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281499619.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:45 Heat of formation + Delta-G solvation = 1.891276 kcal Electronic energy + Delta-G solvation = -24301.708569 eV Core-core repulsion = 20827.719958 eV Total energy + Delta-G solvation = -3473.988611 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.51514 -40.51228 -38.28491 -37.06282 -35.09417 -34.02178 -33.01494 -32.17217 -31.07356 -30.69864 -28.17913 -26.87045 -25.06186 -24.08556 -23.88542 -21.72859 -21.09151 -19.63648 -19.38871 -18.55954 -18.05558 -17.01326 -16.90917 -16.31645 -16.11096 -15.95226 -15.57125 -15.28858 -14.94418 -14.74998 -14.44140 -14.36458 -14.18268 -13.93977 -13.80143 -13.48055 -13.27427 -13.18287 -12.84189 -12.68650 -12.61035 -12.55961 -12.18659 -11.99266 -11.95339 -11.55589 -11.39822 -11.14859 -11.03081 -10.68695 -10.36892 -9.99621 -9.72554 -9.10550 -8.27234 -6.06606 0.17860 0.36117 1.39869 1.41945 1.51728 1.88654 2.17148 2.21960 2.34194 2.45035 2.76771 3.04420 3.21847 3.71585 3.79207 3.85461 3.92561 3.99915 4.04513 4.13310 4.27372 4.35876 4.47795 4.56661 4.64461 4.70254 4.71593 4.80566 4.83498 4.97675 5.03000 5.10639 5.15450 5.23240 5.28331 5.29851 5.42201 5.44442 5.44755 5.51574 5.69232 6.12349 6.43866 6.47874 7.10060 7.23091 7.34609 7.94150 8.67544 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.029068 B = 0.003562 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.013374 B = 7857.959074 C = 8241.692305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.144 4.144 3 C 0.223 3.777 4 N -0.439 5.439 5 C -0.359 4.359 6 H 0.072 0.928 7 C 0.007 3.993 8 N -0.866 5.866 9 Si 0.987 3.013 10 H -0.280 1.280 11 H -0.273 1.273 12 H -0.262 1.262 13 C 0.489 3.511 14 O -0.627 6.627 15 C -0.155 4.155 16 C -0.064 4.064 17 C -0.150 4.150 18 C 0.143 3.857 19 O -0.310 6.310 20 C 0.068 3.932 21 H 0.077 0.923 22 C -0.179 4.179 23 C -0.113 4.113 24 C -0.156 4.156 25 C -0.203 4.203 26 C -0.054 4.054 27 H 0.227 0.773 28 H 0.108 0.892 29 H 0.084 0.916 30 H 0.272 0.728 31 H 0.146 0.854 32 H 0.159 0.841 33 H 0.050 0.950 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.052 0.948 39 H 0.045 0.955 40 H 0.069 0.931 41 H 0.154 0.846 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.142 -10.611 -16.107 19.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.146 4.146 3 C 0.102 3.898 4 N -0.156 5.156 5 C -0.487 4.487 6 H 0.090 0.910 7 C -0.198 4.198 8 N -0.501 5.501 9 Si 0.810 3.190 10 H -0.205 1.205 11 H -0.198 1.198 12 H -0.187 1.187 13 C 0.280 3.720 14 O -0.515 6.515 15 C -0.158 4.158 16 C -0.083 4.083 17 C -0.168 4.168 18 C 0.097 3.903 19 O -0.223 6.223 20 C 0.012 3.988 21 H 0.095 0.905 22 C -0.236 4.236 23 C -0.150 4.150 24 C -0.213 4.213 25 C -0.222 4.222 26 C -0.073 4.073 27 H 0.243 0.757 28 H 0.126 0.874 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.164 0.836 32 H 0.177 0.823 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.122 0.878 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.171 0.829 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.999 -10.349 -16.070 19.756 hybrid contribution -0.045 1.110 1.256 1.677 sum -5.044 -9.239 -14.814 18.173 Atomic orbital electron populations 1.24943 0.96201 1.01167 1.04397 1.23254 0.94848 0.99207 0.97286 1.18640 0.85016 0.84157 1.02019 1.43643 1.55457 1.12219 1.04237 1.19475 1.17249 1.21058 0.90876 0.91008 1.26197 0.94523 0.97211 1.01906 1.70123 1.12092 1.40915 1.26993 0.85106 0.78598 0.78348 0.76900 1.20548 1.19780 1.18668 1.18848 0.82871 0.86167 0.84135 1.90560 1.51283 1.24444 1.85223 1.19884 1.02646 0.95857 0.97406 1.21220 0.98420 0.91308 0.97336 1.20505 0.99993 1.01836 0.94482 1.19146 0.93233 0.89525 0.88443 1.86064 1.61435 1.39975 1.34860 1.22846 0.88859 0.98248 0.88831 0.90499 1.22364 0.95547 1.03530 1.02134 1.21655 0.98940 1.01662 0.92767 1.21778 0.96639 1.01784 1.01125 1.21244 1.05794 0.94126 1.01006 1.20861 0.94506 0.99185 0.92754 0.75664 0.87435 0.89833 0.91822 0.83622 0.82326 0.93124 0.88821 0.91363 0.90663 0.87835 0.92848 0.93560 0.91155 0.82853 0.87022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.48 19.11 74.32 1.42 -9.06 16 2 C -0.14 -6.63 10.75 31.12 0.33 -6.30 16 3 C 0.22 10.12 4.86 84.57 0.41 10.53 16 4 N -0.44 -23.38 2.55 -649.09 -1.66 -25.03 16 5 C -0.36 -20.70 9.02 84.09 0.76 -19.95 16 6 H 0.07 4.39 7.60 -2.91 -0.02 4.37 16 7 C 0.01 0.35 4.96 84.95 0.42 0.77 16 8 N -0.87 -46.35 9.74 21.68 0.21 -46.14 16 9 Si 0.99 42.62 29.58 68.60 2.03 44.65 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 12 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 13 C 0.49 26.00 7.07 86.68 0.61 26.61 16 14 O -0.63 -38.40 16.86 -4.07 -0.07 -38.47 16 15 C -0.15 -6.51 4.88 -20.08 -0.10 -6.61 16 16 C -0.06 -2.19 7.83 22.52 0.18 -2.01 16 17 C -0.15 -4.23 9.97 22.32 0.22 -4.01 16 18 C 0.14 3.97 6.61 22.64 0.15 4.12 16 19 O -0.31 -7.27 9.32 -90.38 -0.84 -8.11 16 20 C 0.07 1.17 2.23 30.59 0.07 1.24 16 21 H 0.08 1.32 6.08 -2.39 -0.01 1.30 16 22 C -0.18 -2.78 9.22 71.98 0.66 -2.12 16 23 C -0.11 -1.45 5.64 30.59 0.17 -1.27 16 24 C -0.16 -2.19 9.81 71.98 0.71 -1.49 16 25 C -0.20 -5.98 8.29 22.32 0.19 -5.80 16 26 C -0.05 -2.04 9.74 22.51 0.22 -1.82 16 27 H 0.23 7.62 7.80 -4.41 -0.03 7.58 16 28 H 0.11 4.05 3.95 -2.39 -0.01 4.04 16 29 H 0.08 3.89 7.33 -2.39 -0.02 3.88 16 30 H 0.27 13.79 8.31 -92.70 -0.77 13.02 16 31 H 0.15 4.50 6.43 -2.91 -0.02 4.48 16 32 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 33 H 0.05 0.97 7.21 -2.39 -0.02 0.95 16 34 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.05 0.81 7.82 -2.39 -0.02 0.79 16 40 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.15 3.59 5.55 -2.91 -0.02 3.57 16 42 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -72.41 352.41 7.11 -65.30 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 1.02 Total: 24.96 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: 6.42 Total: -17.16 kcal Atomic # 7 Polarization: -69.72 SS G_CDS: -1.45 Total: -71.17 kcal Atomic # 8 Polarization: -45.67 SS G_CDS: -0.91 Total: -46.58 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -72.41 7.11 -65.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281499619.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.191 kcal (2) G-P(sol) polarization free energy of solvation -72.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds