Wall clock time and date at job start Tue Mar 31 2020 08:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.50698 * 109.46824 * 239.99625 * 2 1 3 5 5 H 1.08005 * 119.99819 * 240.00204 * 4 2 1 6 6 C 1.37875 * 120.00046 * 60.00863 * 4 2 1 7 7 N 1.31511 * 120.00192 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47454 * 59.99696 * 8 6 4 10 10 H 1.48506 * 109.47297 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47261 * 299.99689 * 8 6 4 12 12 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 13 13 S 1.81391 * 109.47235 * 299.99569 * 12 2 1 14 14 O 1.42104 * 110.54521 * 291.62885 * 13 12 2 15 15 O 1.42108 * 110.54484 * 68.37707 * 13 12 2 16 16 N 1.65597 * 104.45133 * 180.02562 * 13 12 2 17 17 C 1.46497 * 120.00079 * 64.99941 * 16 13 12 18 18 C 1.53003 * 109.47260 * 165.00273 * 17 16 13 19 19 H 1.08994 * 109.64172 * 55.41842 * 18 17 16 20 20 C 1.53030 * 109.64012 * 295.00071 * 18 17 16 21 21 C 1.50067 * 110.14536 * 190.87683 * 20 18 17 22 22 C 1.29445 * 124.07476 * 17.13363 * 21 20 18 23 23 C 1.50060 * 124.07684 * 359.55214 * 22 21 20 24 24 C 1.53017 * 110.15637 * 17.09229 * 23 22 21 25 25 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 26 26 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 27 27 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 30 30 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 31 31 H 0.96996 * 120.00505 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46801 * 59.99811 * 12 2 1 33 33 H 1.09001 * 109.46998 * 179.97438 * 12 2 1 34 34 H 0.97005 * 120.00051 * 245.00077 * 16 13 12 35 35 H 1.09000 * 109.47152 * 284.99995 * 17 16 13 36 36 H 1.09003 * 109.47015 * 45.00467 * 17 16 13 37 37 H 1.08999 * 109.35546 * 311.08866 * 20 18 17 38 38 H 1.09003 * 109.35984 * 70.67019 * 20 18 17 39 39 H 1.07995 * 117.96407 * 197.15138 * 21 20 18 40 40 H 1.08001 * 117.96315 * 179.52658 * 22 21 20 41 41 H 1.08999 * 109.35898 * 137.31597 * 23 22 21 42 42 H 1.08997 * 109.35964 * 256.90217 * 23 22 21 43 43 H 1.09004 * 109.64910 * 190.89998 * 24 23 22 44 44 H 1.08997 * 109.62180 * 70.27883 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6531 -1.5887 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3224 -1.1197 -4.0078 9 1 1.8279 -2.5199 -4.0081 10 1 1.8270 -0.4201 -5.2205 11 1 3.8075 -1.1193 -4.0076 12 6 2.0399 -0.7213 1.2493 13 16 1.4353 0.1338 2.7304 14 8 2.0480 1.4100 2.8544 15 8 0.0278 -0.0182 2.8544 16 7 2.0539 -0.7400 3.9936 17 6 3.5024 -0.7965 4.2055 18 6 3.7921 -1.3324 5.6090 19 1 3.3032 -2.2975 5.7408 20 6 3.2703 -0.3444 6.6547 21 6 3.7753 -0.7192 8.0172 22 6 4.7726 -1.5173 8.2268 23 6 5.5572 -2.1868 7.1368 24 6 5.3063 -1.4860 5.7999 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 0.7090 1.1613 -3.4844 32 1 1.6764 -1.7489 1.2493 33 1 3.1299 -0.7217 1.2492 34 1 1.4572 -1.2146 4.5934 35 1 3.9525 -1.4569 3.4643 36 1 3.9236 0.2038 4.1044 37 1 3.6133 0.6598 6.4057 38 1 2.1804 -0.3617 6.6559 39 1 3.2753 -0.2971 8.8764 40 1 5.0582 -1.7132 9.2497 41 1 6.6197 -2.1402 7.3755 42 1 5.2516 -3.2302 7.0603 43 1 5.7189 -2.0858 4.9885 44 1 5.7763 -0.5026 5.8082 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331317036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:17 Heat of formation + Delta-G solvation = -79.644756 kcal Electronic energy + Delta-G solvation = -23490.823635 eV Core-core repulsion = 20148.743308 eV Total energy + Delta-G solvation = -3342.080327 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.150 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.09310 -36.51211 -36.26040 -35.34789 -35.07588 -31.66388 -31.29254 -30.68334 -26.61701 -25.70716 -25.61524 -25.20300 -23.17931 -21.37369 -19.57234 -18.80350 -18.03886 -17.27696 -16.46617 -15.88395 -15.75181 -15.35348 -14.74756 -14.70695 -14.51903 -14.06841 -13.64586 -13.23963 -13.02642 -12.97854 -12.55289 -12.49155 -12.42962 -12.19587 -12.03617 -11.70149 -11.40684 -11.12121 -11.05147 -10.96065 -10.89566 -10.69475 -10.58818 -10.38870 -10.37558 -10.26189 -10.09800 -9.64511 -9.60098 -9.21473 -9.18195 -8.66478 -8.39592 -6.02953 -4.15133 0.89931 2.09156 3.25328 3.26992 3.32579 3.34061 4.29519 4.37387 4.43839 4.47761 4.62770 4.81776 4.99374 5.00676 5.12987 5.22176 5.27689 5.30261 5.46200 5.56417 5.60818 5.66257 5.68946 5.72438 5.80281 5.84300 5.92113 6.09670 6.22433 6.39174 6.45249 6.71368 6.75033 6.80786 6.91876 7.03611 7.16655 7.32552 7.51444 7.68030 7.98955 8.10212 8.33639 8.83148 9.50233 10.98321 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.025866 B = 0.003614 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.258658 B = 7746.109883 C = 8406.207879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.082 3.918 3 C -0.163 4.163 4 C -0.503 4.503 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.583 4.583 13 S 2.595 3.405 14 O -0.965 6.965 15 O -0.966 6.966 16 N -1.130 6.130 17 C 0.119 3.881 18 C -0.092 4.092 19 H 0.080 0.920 20 C -0.091 4.091 21 C -0.150 4.150 22 C -0.163 4.163 23 C -0.090 4.090 24 C -0.117 4.117 25 H 0.028 0.972 26 H 0.095 0.905 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.094 0.906 30 H 0.028 0.972 31 H 0.263 0.737 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.410 0.590 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.283 -5.408 17.445 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.080 3.920 3 C -0.221 4.221 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.716 4.716 13 S 2.692 3.308 14 O -0.955 6.955 15 O -0.957 6.957 16 N -0.887 5.887 17 C -0.008 4.008 18 C -0.112 4.112 19 H 0.098 0.902 20 C -0.127 4.127 21 C -0.169 4.169 22 C -0.181 4.181 23 C -0.127 4.127 24 C -0.155 4.155 25 H 0.046 0.954 26 H 0.113 0.887 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.113 0.887 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.243 0.757 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.780 -4.394 17.305 19.098 hybrid contribution 0.461 -1.287 -0.745 1.557 sum 7.241 -5.681 16.560 18.945 Atomic orbital electron populations 1.22273 0.96940 1.00619 1.02318 1.17920 0.92811 0.92205 0.89076 1.22270 0.99671 0.97811 1.02347 1.20914 1.31789 1.12095 0.89457 0.92380 1.24937 0.94889 0.94983 0.98919 1.69788 1.36237 1.22572 1.23582 0.86597 0.79142 0.79708 0.82163 1.20291 1.21191 1.20270 1.30523 1.11197 1.12875 1.17018 1.05553 0.74340 0.75245 0.75613 1.93535 1.78141 1.38240 1.85536 1.93552 1.29597 1.86718 1.85804 1.55826 1.14129 1.71234 1.47544 1.21357 0.80400 1.02089 0.96935 1.21403 0.96563 0.99564 0.93664 0.90212 1.20548 1.00937 0.99510 0.91750 1.22105 0.97693 0.99015 0.98040 1.22032 0.97585 0.99396 0.99079 1.20428 0.99549 0.99297 0.93382 1.21636 0.95117 1.01503 0.97225 0.95356 0.88667 0.94497 0.94511 0.88696 0.95297 0.92686 0.86323 0.86522 0.75657 0.91652 0.90139 0.90215 0.90760 0.88094 0.88259 0.91075 0.90948 0.91051 0.91200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 7.78 37.16 0.29 -3.76 16 2 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 3 C -0.16 -4.01 7.78 37.16 0.29 -3.72 16 4 C -0.50 -13.20 8.01 -34.44 -0.28 -13.47 16 5 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 6 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.88 -24.16 9.35 55.43 0.52 -23.64 16 8 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 C -0.58 -11.22 5.01 37.16 0.19 -11.03 16 13 S 2.59 47.24 4.49 -107.50 -0.48 46.76 16 14 O -0.96 -19.98 15.12 -57.54 -0.87 -20.85 16 15 O -0.97 -20.16 15.70 -57.54 -0.90 -21.07 16 16 N -1.13 -14.81 5.56 -10.61 -0.06 -14.87 16 17 C 0.12 1.33 5.53 -4.04 -0.02 1.31 16 18 C -0.09 -0.85 2.27 -90.40 -0.21 -1.06 16 19 H 0.08 0.70 8.13 -51.93 -0.42 0.28 16 20 C -0.09 -0.88 5.20 -28.17 -0.15 -1.02 16 21 C -0.15 -1.33 9.80 -35.90 -0.35 -1.68 16 22 C -0.16 -1.33 9.80 -35.90 -0.35 -1.68 16 23 C -0.09 -0.66 6.12 -28.18 -0.17 -0.83 16 24 C -0.12 -0.94 5.31 -26.52 -0.14 -1.08 16 25 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 26 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 27 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.09 2.52 6.07 -51.93 -0.32 2.20 16 30 H 0.03 0.67 5.46 -51.93 -0.28 0.39 16 31 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 33 H 0.12 2.01 8.14 -51.92 -0.42 1.59 16 34 H 0.41 4.59 8.42 -34.47 -0.29 4.30 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.96 7.66 -51.93 -0.40 0.56 16 37 H 0.08 0.82 8.08 -51.93 -0.42 0.41 16 38 H 0.07 0.72 7.87 -51.93 -0.41 0.31 16 39 H 0.10 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.10 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 LS Contribution 348.00 15.07 5.24 5.24 Total: -1.00 -31.33 348.00 -9.98 -41.30 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -7.33 Total: 6.05 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: -1.08 Total: -34.51 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.46 Total: -38.51 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -1.77 Total: -41.91 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 47.24 SS G_CDS: -0.48 Total: 46.76 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.33 -9.98 -41.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331317036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.340 kcal (2) G-P(sol) polarization free energy of solvation -31.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds