Wall clock time and date at job start Tue Mar 31 2020 08:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.50698 * 109.46824 * 239.99625 * 2 1 3 5 5 H 1.08005 * 119.99819 * 240.00204 * 4 2 1 6 6 C 1.37875 * 120.00046 * 60.00863 * 4 2 1 7 7 N 1.31511 * 120.00192 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47454 * 59.99696 * 8 6 4 10 10 H 1.48506 * 109.47297 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47261 * 299.99689 * 8 6 4 12 12 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 13 13 S 1.81391 * 109.47235 * 299.99569 * 12 2 1 14 14 O 1.42104 * 110.54521 * 291.62885 * 13 12 2 15 15 O 1.42108 * 110.54484 * 68.37707 * 13 12 2 16 16 N 1.65597 * 104.45133 * 180.02562 * 13 12 2 17 17 C 1.46497 * 120.00079 * 64.99941 * 16 13 12 18 18 C 1.53003 * 109.47260 * 165.00273 * 17 16 13 19 19 H 1.08994 * 109.64172 * 55.41842 * 18 17 16 20 20 C 1.53030 * 109.64012 * 295.00071 * 18 17 16 21 21 C 1.50067 * 110.14536 * 190.87683 * 20 18 17 22 22 C 1.29445 * 124.07476 * 17.13363 * 21 20 18 23 23 C 1.50060 * 124.07684 * 359.55214 * 22 21 20 24 24 C 1.53017 * 110.15637 * 17.09229 * 23 22 21 25 25 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 26 26 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 27 27 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 30 30 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 31 31 H 0.96996 * 120.00505 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46801 * 59.99811 * 12 2 1 33 33 H 1.09001 * 109.46998 * 179.97438 * 12 2 1 34 34 H 0.97005 * 120.00051 * 245.00077 * 16 13 12 35 35 H 1.09000 * 109.47152 * 284.99995 * 17 16 13 36 36 H 1.09003 * 109.47015 * 45.00467 * 17 16 13 37 37 H 1.08999 * 109.35546 * 311.08866 * 20 18 17 38 38 H 1.09003 * 109.35984 * 70.67019 * 20 18 17 39 39 H 1.07995 * 117.96407 * 197.15138 * 21 20 18 40 40 H 1.08001 * 117.96315 * 179.52658 * 22 21 20 41 41 H 1.08999 * 109.35898 * 137.31597 * 23 22 21 42 42 H 1.08997 * 109.35964 * 256.90217 * 23 22 21 43 43 H 1.09004 * 109.64910 * 190.89998 * 24 23 22 44 44 H 1.08997 * 109.62180 * 70.27883 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6531 -1.5887 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3224 -1.1197 -4.0078 9 1 1.8279 -2.5199 -4.0081 10 1 1.8270 -0.4201 -5.2205 11 1 3.8075 -1.1193 -4.0076 12 6 2.0399 -0.7213 1.2493 13 16 1.4353 0.1338 2.7304 14 8 2.0480 1.4100 2.8544 15 8 0.0278 -0.0182 2.8544 16 7 2.0539 -0.7400 3.9936 17 6 3.5024 -0.7965 4.2055 18 6 3.7921 -1.3324 5.6090 19 1 3.3032 -2.2975 5.7408 20 6 3.2703 -0.3444 6.6547 21 6 3.7753 -0.7192 8.0172 22 6 4.7726 -1.5173 8.2268 23 6 5.5572 -2.1868 7.1368 24 6 5.3063 -1.4860 5.7999 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 0.7090 1.1613 -3.4844 32 1 1.6764 -1.7489 1.2493 33 1 3.1299 -0.7217 1.2492 34 1 1.4572 -1.2146 4.5934 35 1 3.9525 -1.4569 3.4643 36 1 3.9236 0.2038 4.1044 37 1 3.6133 0.6598 6.4057 38 1 2.1804 -0.3617 6.6559 39 1 3.2753 -0.2971 8.8764 40 1 5.0582 -1.7132 9.2497 41 1 6.6197 -2.1402 7.3755 42 1 5.2516 -3.2302 7.0603 43 1 5.7189 -2.0858 4.9885 44 1 5.7763 -0.5026 5.8082 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331317036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:17 Heat of formation + Delta-G solvation = -99.085578 kcal Electronic energy + Delta-G solvation = -23491.666652 eV Core-core repulsion = 20148.743308 eV Total energy + Delta-G solvation = -3342.923344 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.79870 -38.10948 -38.06580 -36.86991 -36.08832 -33.62142 -32.02859 -31.40302 -28.29062 -27.67800 -27.24592 -26.44390 -23.82755 -22.15342 -21.33194 -20.21191 -18.87231 -18.58735 -17.86584 -17.43447 -16.89291 -16.71052 -16.54073 -15.78667 -15.51373 -15.05311 -14.67999 -14.62416 -14.45752 -14.38780 -13.90408 -13.79839 -13.50239 -13.19334 -13.11283 -13.01498 -12.86859 -12.82045 -12.78581 -12.62351 -12.47785 -12.16186 -12.14482 -11.94281 -11.60109 -11.54969 -11.40464 -11.25130 -11.05231 -10.66509 -10.40087 -10.23460 -9.82173 -8.01837 -6.20728 -0.56520 1.45864 1.46384 1.46636 1.53895 1.96037 2.45235 2.88987 3.20358 3.35838 3.69418 3.80520 3.93874 4.04182 4.21368 4.27141 4.34275 4.48946 4.54451 4.61710 4.65277 4.74991 4.79321 4.82959 4.88353 4.89144 5.01496 5.04917 5.08756 5.10821 5.14361 5.20093 5.38515 5.40501 5.52186 5.52479 5.65521 5.82574 5.98761 6.11883 6.12691 6.17251 6.35365 6.84195 7.47665 8.97798 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.025866 B = 0.003614 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.258658 B = 7746.109883 C = 8406.207879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.069 3.931 3 C -0.159 4.159 4 C -0.519 4.519 5 H 0.064 0.936 6 C 0.017 3.983 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.272 1.272 10 H -0.289 1.289 11 H -0.271 1.271 12 C -0.586 4.586 13 S 2.615 3.385 14 O -0.992 6.992 15 O -0.995 6.995 16 N -1.112 6.112 17 C 0.108 3.892 18 C -0.086 4.086 19 H 0.090 0.910 20 C -0.094 4.094 21 C -0.167 4.167 22 C -0.159 4.159 23 C -0.091 4.091 24 C -0.117 4.117 25 H 0.032 0.968 26 H 0.070 0.930 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.032 0.968 31 H 0.261 0.739 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.422 0.578 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.823 -7.320 18.449 21.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.067 3.933 3 C -0.217 4.217 4 C -0.558 4.558 5 H 0.082 0.918 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.197 1.197 10 H -0.215 1.215 11 H -0.196 1.196 12 C -0.719 4.719 13 S 2.712 3.288 14 O -0.982 6.982 15 O -0.986 6.986 16 N -0.874 5.874 17 C -0.018 4.018 18 C -0.106 4.106 19 H 0.108 0.892 20 C -0.131 4.131 21 C -0.185 4.185 22 C -0.177 4.177 23 C -0.128 4.128 24 C -0.155 4.155 25 H 0.051 0.949 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.258 0.742 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.123 0.877 40 H 0.129 0.871 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.318 -6.315 18.311 21.080 hybrid contribution 0.012 -0.693 -0.976 1.197 sum 8.330 -7.007 17.335 20.469 Atomic orbital electron populations 1.22212 0.97891 1.00447 1.01289 1.17916 0.92246 0.92172 0.90994 1.22198 0.99837 0.98375 1.01293 1.21292 1.31703 1.12342 0.90425 0.91754 1.25688 0.95187 0.95654 1.01715 1.69939 1.37181 1.23735 1.23883 0.85668 0.78795 0.78696 0.78784 1.19721 1.21458 1.19581 1.30452 1.12636 1.13374 1.15419 1.04651 0.73404 0.74898 0.75855 1.93499 1.78464 1.40194 1.86008 1.93505 1.31646 1.87110 1.86306 1.55338 1.15408 1.70721 1.45901 1.21660 0.78763 1.02380 0.98959 1.21380 0.97643 0.99589 0.92003 0.89206 1.20557 1.00742 0.99150 0.92689 1.22126 0.98603 1.00113 0.97674 1.22264 0.96904 0.98496 1.00062 1.20484 1.00198 0.99526 0.92555 1.21661 0.93986 1.01659 0.98222 0.94937 0.91125 0.94153 0.94040 0.91198 0.94875 0.92959 0.84456 0.84393 0.74197 0.89607 0.91048 0.91473 0.91238 0.87708 0.87095 0.89851 0.90006 0.89809 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.00 7.78 71.98 0.56 -7.44 16 2 C 0.07 3.29 0.52 -52.93 -0.03 3.27 16 3 C -0.16 -7.88 7.78 71.98 0.56 -7.32 16 4 C -0.52 -26.79 8.01 25.60 0.21 -26.59 16 5 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 6 C 0.02 0.89 5.15 84.65 0.44 1.33 16 7 N -0.91 -50.41 9.35 21.45 0.20 -50.21 16 8 Si 0.95 41.87 29.54 68.60 2.03 43.90 16 9 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 10 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 12 C -0.59 -21.56 5.01 71.98 0.36 -21.20 16 13 S 2.61 92.38 4.49 -56.49 -0.25 92.13 16 14 O -0.99 -40.57 15.12 -127.65 -1.93 -42.50 16 15 O -1.00 -40.90 15.70 -127.65 -2.00 -42.90 16 16 N -1.11 -27.04 5.56 -187.49 -1.04 -28.09 16 17 C 0.11 2.18 5.53 86.38 0.48 2.66 16 18 C -0.09 -1.40 2.27 -10.65 -0.02 -1.42 16 19 H 0.09 1.30 8.13 -2.39 -0.02 1.29 16 20 C -0.09 -1.72 5.20 29.66 0.15 -1.57 16 21 C -0.17 -2.71 9.80 27.04 0.27 -2.44 16 22 C -0.16 -2.23 9.80 27.03 0.27 -1.96 16 23 C -0.09 -1.08 6.12 29.65 0.18 -0.90 16 24 C -0.12 -1.59 5.31 30.73 0.16 -1.43 16 25 H 0.03 1.54 5.46 -2.39 -0.01 1.53 16 26 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16 27 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 30 H 0.03 1.56 5.46 -2.39 -0.01 1.55 16 31 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 32 H 0.14 4.49 8.14 -2.39 -0.02 4.47 16 33 H 0.14 4.42 8.14 -2.39 -0.02 4.40 16 34 H 0.42 8.58 8.42 -96.74 -0.81 7.76 16 35 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.60 7.66 -2.39 -0.02 1.58 16 37 H 0.07 1.37 8.08 -2.39 -0.02 1.35 16 38 H 0.07 1.29 7.87 -2.39 -0.02 1.27 16 39 H 0.10 1.56 8.06 -2.91 -0.02 1.54 16 40 H 0.11 1.28 8.06 -2.91 -0.02 1.26 16 41 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 43 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.06 0.95 8.12 -2.39 -0.02 0.93 16 Total: -1.00 -66.51 348.00 0.73 -65.78 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 0.16 Total: 26.90 kcal Atomic # 6 Polarization: -68.58 SS G_CDS: 3.58 Total: -65.00 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -0.84 Total: -78.30 kcal Atomic # 8 Polarization: -81.47 SS G_CDS: -3.93 Total: -85.41 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 16 Polarization: 92.38 SS G_CDS: -0.25 Total: 92.13 kcal Total: -66.51 0.73 -65.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331317036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.305 kcal (2) G-P(sol) polarization free energy of solvation -66.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds