Wall clock time and date at job start Tue Mar 31 2020 08:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00221 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 C 1.53004 * 109.47200 * 240.00561 * 2 1 3 13 13 S 1.81396 * 109.47142 * 59.99836 * 12 2 1 14 14 O 1.42102 * 110.54398 * 291.62648 * 13 12 2 15 15 O 1.42095 * 110.54373 * 68.37936 * 13 12 2 16 16 N 1.65608 * 104.44869 * 180.02562 * 13 12 2 17 17 C 1.47424 * 125.64746 * 90.02306 * 16 13 12 18 18 C 1.54905 * 104.83098 * 204.09214 * 17 16 13 19 19 C 1.55154 * 101.58260 * 322.99152 * 18 17 16 20 20 H 1.08999 * 110.72171 * 276.95824 * 19 18 17 21 21 C 1.53004 * 110.71906 * 153.86473 * 19 18 17 22 22 C 1.53000 * 117.49693 * 130.07573 * 21 19 18 23 23 C 1.52998 * 60.00159 * 252.50996 * 22 21 19 24 24 C 1.47013 * 125.64736 * 269.71527 * 16 13 12 25 25 H 1.09004 * 109.46783 * 299.99970 * 1 2 3 26 26 H 1.09005 * 109.46870 * 59.99629 * 1 2 3 27 27 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47438 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47069 * 300.00573 * 3 2 1 30 30 H 1.09004 * 109.46658 * 59.99952 * 3 2 1 31 31 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47211 * 180.02562 * 12 2 1 33 33 H 1.09007 * 109.46376 * 299.99965 * 12 2 1 34 34 H 1.08996 * 110.36846 * 322.93326 * 17 16 13 35 35 H 1.09006 * 110.36647 * 85.25424 * 17 16 13 36 36 H 1.09004 * 111.00588 * 81.06571 * 18 17 16 37 37 H 1.09001 * 111.00592 * 204.91452 * 18 17 16 38 38 H 1.08995 * 115.55108 * 275.78278 * 21 19 18 39 39 H 1.09003 * 117.50168 * 0.02562 * 22 21 19 40 40 H 1.08998 * 117.49703 * 145.01708 * 22 21 19 41 41 H 1.08999 * 117.49831 * 252.51692 * 23 22 21 42 42 H 1.08999 * 117.51757 * 107.47794 * 23 22 21 43 43 H 1.08995 * 109.88706 * 298.39549 * 24 16 13 44 44 H 1.09005 * 109.88217 * 59.56065 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0078 9 1 3.7959 -1.1286 4.0136 10 1 1.8119 -0.4308 5.2203 11 1 1.8152 -2.5278 4.0020 12 6 2.0400 -0.7211 -1.2493 13 16 1.4353 0.1341 -2.7304 14 8 0.0279 -0.0181 -2.8544 15 8 2.0480 1.4102 -2.8543 16 7 2.0530 -0.7406 -3.9937 17 6 1.3949 -1.8853 -4.6492 18 6 2.5520 -2.7013 -5.2777 19 6 3.5087 -1.5739 -5.7477 20 1 3.1986 -1.1842 -6.7173 21 6 4.9521 -2.0781 -5.8057 22 6 5.7414 -1.8146 -7.0897 23 6 5.2601 -3.2300 -6.7645 24 6 3.3456 -0.5000 -4.6514 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.7006 1.1553 3.4844 32 1 3.1300 -0.7215 -1.2491 33 1 1.6766 -1.7488 -1.2493 34 1 0.8613 -2.4879 -3.9143 35 1 0.7115 -1.5374 -5.4239 36 1 3.0321 -3.3359 -4.5328 37 1 2.1992 -3.2921 -6.1230 38 1 5.4989 -2.0479 -4.8633 39 1 5.2325 -1.2816 -7.8929 40 1 6.8077 -1.6107 -6.9921 41 1 6.0097 -3.9574 -6.4529 42 1 4.4343 -3.6289 -7.3536 43 1 3.3546 0.4938 -5.0990 44 1 4.1534 -0.5888 -3.9249 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331803899.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:45 Heat of formation + Delta-G solvation = -51.614548 kcal Electronic energy + Delta-G solvation = -23826.370892 eV Core-core repulsion = 20485.506046 eV Total energy + Delta-G solvation = -3340.864846 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.21586 -36.56267 -36.50023 -36.24042 -35.26481 -31.65886 -30.64139 -29.13206 -26.62991 -25.71037 -25.22330 -23.06921 -22.80703 -21.88369 -20.14281 -19.41201 -18.48014 -17.35473 -16.33032 -15.99819 -15.72034 -15.28869 -15.03730 -14.75790 -14.18472 -13.78553 -13.34018 -13.11423 -13.00270 -12.82778 -12.55965 -12.49437 -12.07660 -11.81159 -11.72018 -11.54240 -11.46510 -11.25474 -11.06374 -11.03594 -10.93110 -10.84147 -10.68959 -10.44937 -10.37814 -10.26468 -10.10689 -10.04648 -9.64636 -9.56293 -8.88943 -8.58333 -8.39678 -6.02912 -4.15089 0.83114 3.15443 3.27027 3.32517 3.34066 3.51480 4.22905 4.34006 4.40137 4.44718 4.51100 4.71479 4.77891 4.98332 5.07044 5.18554 5.22417 5.30556 5.39767 5.44709 5.51672 5.64828 5.69475 5.69729 5.74298 5.82345 5.87088 5.92705 5.94681 6.17492 6.24689 6.39474 6.55487 6.71351 6.80320 6.91420 7.05001 7.31966 7.50951 7.67923 7.98402 8.09913 8.33417 8.83094 9.50202 10.98395 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.020897 B = 0.004118 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.603094 B = 6798.052422 C = 7406.057282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.082 3.918 3 C -0.163 4.163 4 C -0.502 4.502 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.581 4.581 13 S 2.607 3.393 14 O -0.960 6.960 15 O -0.960 6.960 16 N -1.022 6.022 17 C 0.121 3.879 18 C -0.124 4.124 19 C -0.067 4.067 20 H 0.084 0.916 21 C -0.144 4.144 22 C -0.181 4.181 23 C -0.177 4.177 24 C 0.128 3.872 25 H 0.095 0.905 26 H 0.027 0.973 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.027 0.973 30 H 0.095 0.905 31 H 0.263 0.737 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.070 0.930 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.265 -7.179 -16.997 19.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.079 3.921 3 C -0.221 4.221 4 C -0.542 4.542 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.715 4.715 13 S 2.707 3.293 14 O -0.950 6.950 15 O -0.951 6.951 16 N -0.859 5.859 17 C -0.005 4.005 18 C -0.162 4.162 19 C -0.087 4.087 20 H 0.102 0.898 21 C -0.162 4.162 22 C -0.218 4.218 23 C -0.214 4.214 24 C 0.002 3.998 25 H 0.114 0.886 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.127 0.873 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.088 0.912 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.583 -6.215 -16.914 18.865 hybrid contribution 0.792 -1.054 1.168 1.762 sum 6.375 -7.269 -15.746 18.477 Atomic orbital electron populations 1.22273 0.96904 1.00604 1.02324 1.17938 0.92837 0.92227 0.89077 1.22269 0.99706 0.97804 1.02293 1.20901 1.31700 1.12152 0.89405 0.92394 1.24936 0.94877 0.94992 0.98908 1.69790 1.36200 1.22622 1.23585 0.86594 0.79123 0.79729 0.82152 1.20280 1.21164 1.20277 1.30567 1.11225 1.12804 1.16858 1.05350 0.74433 0.74660 0.74843 1.93536 1.29265 1.86545 1.85700 1.93530 1.78247 1.37614 1.85675 1.58973 1.29826 1.47353 1.49713 1.21923 0.94939 0.86524 0.97085 1.22836 0.95562 0.97046 1.00805 1.21815 0.92874 0.95180 0.98835 0.89814 1.22297 0.95721 1.03068 0.95132 1.23027 1.00345 0.99282 0.99106 1.22917 1.03452 0.91543 1.03529 1.21677 0.84843 0.98679 0.94601 0.88607 0.95406 0.94503 0.94487 0.95394 0.88661 0.92677 0.86509 0.86511 0.90609 0.91559 0.90221 0.90256 0.87345 0.88778 0.88860 0.88877 0.88789 0.91162 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 7.77 37.16 0.29 -3.79 16 2 C 0.08 2.01 0.52 -155.66 -0.08 1.93 16 3 C -0.16 -4.07 7.78 37.16 0.29 -3.79 16 4 C -0.50 -13.30 8.01 -34.44 -0.28 -13.58 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.06 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.88 -24.29 9.35 55.43 0.52 -23.77 16 8 Si 0.90 20.72 29.54 -169.99 -5.02 15.69 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 12 C -0.58 -11.63 5.12 37.16 0.19 -11.44 16 13 S 2.61 50.34 4.69 -107.50 -0.50 49.84 16 14 O -0.96 -20.73 15.22 -57.54 -0.88 -21.60 16 15 O -0.96 -20.80 15.22 -57.54 -0.88 -21.68 16 16 N -1.02 -15.11 3.62 -111.42 -0.40 -15.52 16 17 C 0.12 1.45 6.89 -2.53 -0.02 1.43 16 18 C -0.12 -1.12 6.29 -24.59 -0.15 -1.28 16 19 C -0.07 -0.63 3.11 -88.78 -0.28 -0.91 16 20 H 0.08 0.73 7.96 -51.93 -0.41 0.31 16 21 C -0.14 -1.19 5.19 -90.62 -0.47 -1.66 16 22 C -0.18 -1.32 10.19 -26.73 -0.27 -1.59 16 23 C -0.18 -1.25 9.98 -26.73 -0.27 -1.52 16 24 C 0.13 1.59 6.50 -3.06 -0.02 1.57 16 25 H 0.10 2.57 6.06 -51.93 -0.31 2.25 16 26 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 27 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 30 H 0.09 2.55 6.08 -51.93 -0.32 2.24 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.12 2.14 8.14 -51.92 -0.42 1.72 16 33 H 0.12 2.13 8.14 -51.92 -0.42 1.71 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.72 8.05 -51.93 -0.42 0.30 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.11 0.93 7.78 -51.93 -0.40 0.52 16 39 H 0.09 0.65 8.08 -51.93 -0.42 0.23 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 0.78 7.59 -51.93 -0.39 0.38 16 LS Contribution 349.59 15.07 5.27 5.27 Total: -1.00 -31.36 349.59 -10.49 -41.85 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.44 Total: 2.90 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: -1.16 Total: -32.99 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.12 Total: -39.29 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -1.75 Total: -43.28 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 50.34 SS G_CDS: -0.50 Total: 49.84 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.36 -10.49 -41.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331803899.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.762 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds