Wall clock time and date at job start Tue Mar 31 2020 08:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47405 * 2 1 4 4 H 1.09001 * 110.42925 * 305.70267 * 3 2 1 5 5 C 1.54889 * 110.48619 * 68.23790 * 3 2 1 6 6 C 1.55235 * 102.58407 * 156.68027 * 5 3 2 7 7 C 1.54267 * 104.23249 * 322.08352 * 6 5 3 8 8 C 1.53875 * 106.59796 * 23.61067 * 7 6 5 9 9 H 1.08993 * 110.03162 * 240.71239 * 8 7 6 10 10 N 1.46500 * 110.06851 * 119.30699 * 8 7 6 11 11 S 1.65603 * 120.00092 * 97.81092 * 10 8 7 12 12 O 1.42097 * 104.27901 * 181.07143 * 11 10 8 13 13 O 1.42103 * 104.27418 * 308.92783 * 11 10 8 14 14 C 1.81402 * 104.44767 * 64.99717 * 11 10 8 15 15 C 1.53002 * 109.47002 * 173.70427 * 14 11 10 16 16 C 1.50701 * 115.54775 * 65.19338 * 15 14 11 17 17 H 1.08001 * 119.99930 * 264.78078 * 16 15 14 18 18 C 1.37883 * 120.00003 * 84.78147 * 16 15 14 19 19 N 1.31510 * 120.00074 * 352.23925 * 18 16 15 20 20 Si 1.86804 * 119.99712 * 172.23637 * 18 16 15 21 21 H 1.48498 * 109.47400 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47124 * 120.00400 * 20 18 16 23 23 H 1.48502 * 109.46719 * 240.00002 * 20 18 16 24 24 C 1.52993 * 117.49994 * 279.52095 * 15 14 11 25 25 C 1.52997 * 117.49904 * 210.85812 * 15 14 11 26 26 H 1.09005 * 109.46742 * 60.00093 * 1 2 3 27 27 H 1.08994 * 109.47114 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47326 * 300.00535 * 1 2 3 29 29 H 1.09001 * 109.46883 * 239.99336 * 2 1 3 30 30 H 1.09005 * 109.46742 * 119.99907 * 2 1 3 31 31 H 1.09004 * 110.75573 * 275.07036 * 5 3 2 32 32 H 1.09002 * 110.75769 * 38.44037 * 5 3 2 33 33 H 1.09009 * 110.46671 * 203.39325 * 6 5 3 34 34 H 1.08996 * 110.58590 * 80.83476 * 6 5 3 35 35 H 1.08998 * 110.03034 * 264.32861 * 7 6 5 36 36 H 1.08998 * 110.03211 * 142.90165 * 7 6 5 37 37 H 0.96998 * 120.00157 * 277.80609 * 10 8 7 38 38 H 1.09006 * 109.47076 * 293.70737 * 14 11 10 39 39 H 1.09002 * 109.46883 * 53.70478 * 14 11 10 40 40 H 0.96994 * 120.00197 * 185.01868 * 19 18 16 41 41 H 1.08999 * 117.50233 * 0.02562 * 24 15 14 42 42 H 1.09007 * 117.49829 * 145.01912 * 24 15 14 43 43 H 1.08996 * 117.50108 * 214.97993 * 25 15 14 44 44 H 1.09005 * 117.49834 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6049 1.9999 -0.8295 5 6 1.7137 2.1329 1.3475 6 6 2.7722 3.2665 1.4119 7 6 4.0459 2.6302 0.8181 8 6 3.5804 1.4704 -0.0796 9 1 3.9903 0.5285 0.2847 10 7 4.0073 1.7019 -1.4618 11 16 5.3803 0.9761 -2.0369 12 8 5.4891 1.4423 -3.3748 13 8 6.3731 1.2881 -1.0693 14 6 5.0000 -0.7975 -2.0097 15 6 6.1415 -1.5739 -2.6692 16 6 7.4653 -1.5182 -1.9512 17 1 8.2075 -0.7898 -2.2427 18 6 7.7291 -2.3973 -0.9222 19 7 6.7760 -3.1798 -0.4653 20 14 9.4403 -2.4767 -0.1772 21 1 10.3248 -1.5010 -0.8634 22 1 9.3665 -2.1457 1.2685 23 1 9.9896 -3.8462 -0.3440 24 6 6.1687 -1.6276 -4.1979 25 6 5.7855 -2.8731 -3.3947 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 0.7041 2.5438 1.3364 32 1 1.8401 1.4383 2.1780 33 1 2.9433 3.5700 2.4448 34 1 2.4567 4.1200 0.8119 35 1 4.6817 2.2511 1.6181 36 1 4.5895 3.3661 0.2256 37 1 3.4859 2.2802 -2.0401 38 1 4.8841 -1.1284 -0.9776 39 1 4.0742 -0.9789 -2.5556 40 1 6.9405 -3.7454 0.3053 41 1 5.3736 -1.1094 -4.7340 42 1 7.1441 -1.6229 -4.6845 43 1 6.5090 -3.6873 -3.3532 44 1 4.7380 -3.1744 -3.4026 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331925784.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:36 Heat of formation + Delta-G solvation = -96.489623 kcal Electronic energy + Delta-G solvation = -24141.118789 eV Core-core repulsion = 20798.308014 eV Total energy + Delta-G solvation = -3342.810775 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.150 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -39.92504 -38.57483 -37.89863 -36.76893 -34.76490 -34.09248 -33.71420 -29.86615 -28.45214 -28.04729 -27.49425 -23.45940 -23.00305 -21.70460 -21.38797 -21.01435 -20.03682 -18.32886 -18.30694 -17.57046 -16.79655 -16.70789 -16.20360 -15.98308 -15.63687 -15.34437 -14.93265 -14.70060 -14.13029 -13.91238 -13.76917 -13.68629 -13.62316 -13.14541 -12.93614 -12.89240 -12.86505 -12.80734 -12.57445 -12.45085 -12.28208 -12.21487 -11.94379 -11.83691 -11.69498 -11.52768 -11.48401 -11.37681 -11.23153 -10.88049 -10.55973 -10.37077 -9.86346 -8.20171 -6.34374 -0.49032 1.35600 1.39087 1.50178 2.06010 2.38802 2.94190 3.06997 3.37345 3.46282 3.54890 3.71445 3.88089 3.99025 4.21411 4.28730 4.36407 4.44474 4.49552 4.51831 4.57604 4.64668 4.67156 4.73508 4.82704 4.84522 4.85271 4.96673 5.02886 5.13622 5.20056 5.22271 5.28349 5.31505 5.37612 5.45755 5.49236 5.52386 5.57794 5.62518 5.71141 6.21686 6.23935 6.71453 7.37650 8.86917 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.015286 B = 0.005333 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.267775 B = 5249.329536 C = 5391.050180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C -0.088 4.088 4 H 0.096 0.904 5 C -0.113 4.113 6 C -0.117 4.117 7 C -0.146 4.146 8 C 0.142 3.858 9 H 0.073 0.927 10 N -1.106 6.106 11 S 2.620 3.380 12 O -0.999 6.999 13 O -0.991 6.991 14 C -0.549 4.549 15 C 0.010 3.990 16 C -0.533 4.533 17 H 0.047 0.953 18 C 0.044 3.956 19 N -0.890 5.890 20 Si 0.935 3.065 21 H -0.274 1.274 22 H -0.276 1.276 23 H -0.271 1.271 24 C -0.198 4.198 25 C -0.137 4.137 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.422 0.578 38 H 0.121 0.879 39 H 0.131 0.869 40 H 0.265 0.735 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.158 8.240 3.170 17.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C -0.108 4.108 4 H 0.114 0.886 5 C -0.151 4.151 6 C -0.155 4.155 7 C -0.186 4.186 8 C 0.035 3.965 9 H 0.091 0.909 10 N -0.866 5.866 11 S 2.717 3.283 12 O -0.989 6.989 13 O -0.981 6.981 14 C -0.682 4.682 15 C 0.008 3.992 16 C -0.571 4.571 17 H 0.065 0.935 18 C -0.160 4.160 19 N -0.526 5.526 20 Si 0.760 3.240 21 H -0.199 1.199 22 H -0.202 1.202 23 H -0.196 1.196 24 C -0.235 4.235 25 C -0.176 4.176 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.258 0.742 38 H 0.139 0.861 39 H 0.150 0.850 40 H 0.075 0.925 41 H 0.117 0.883 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.267 8.417 3.118 16.856 hybrid contribution 0.781 -0.672 0.336 1.083 sum -13.487 7.745 3.454 15.931 Atomic orbital electron populations 1.21731 0.94201 1.01855 1.02506 1.21662 0.97325 0.95563 1.01961 1.22337 0.91551 0.97033 0.99916 0.88593 1.22622 0.99504 0.97008 0.95945 1.22392 0.93630 0.98182 1.01255 1.22677 0.99028 0.97784 0.99072 1.21675 0.96707 0.98237 0.79867 0.90931 1.55601 1.46799 1.63447 1.20771 1.04427 0.73502 0.77649 0.72701 1.93456 1.86194 1.80505 1.38732 1.93488 1.58539 1.83375 1.62698 1.29853 1.06681 1.21542 1.10117 1.18420 0.92630 0.98740 0.89403 1.20707 0.99543 1.18158 1.18644 0.93514 1.25500 0.99816 0.94156 0.96478 1.70020 1.33273 1.25646 1.23672 0.85859 0.81384 0.78124 0.78618 1.19868 1.20169 1.19603 1.23245 1.02240 1.03336 0.94685 1.22504 0.99824 0.91344 1.03931 0.92210 0.92885 0.91555 0.92677 0.92173 0.89150 0.91067 0.90690 0.90592 0.92119 0.91980 0.74163 0.86060 0.85030 0.92544 0.88347 0.89983 0.91533 0.89359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.78 71.98 0.70 -1.51 16 2 C -0.13 -2.50 5.28 30.60 0.16 -2.34 16 3 C -0.09 -1.68 2.57 -9.72 -0.02 -1.70 16 4 H 0.10 1.57 7.83 -2.39 -0.02 1.55 16 5 C -0.11 -1.77 5.62 32.01 0.18 -1.59 16 6 C -0.12 -2.06 6.84 31.79 0.22 -1.84 16 7 C -0.15 -3.75 6.60 31.32 0.21 -3.54 16 8 C 0.14 3.77 2.91 45.71 0.13 3.90 16 9 H 0.07 2.18 7.06 -2.39 -0.02 2.17 16 10 N -1.11 -31.89 5.28 -166.39 -0.88 -32.76 16 11 S 2.62 106.09 5.11 -56.49 -0.29 105.80 16 12 O -1.00 -43.81 18.08 -127.65 -2.31 -46.12 16 13 O -0.99 -48.47 17.49 -127.65 -2.23 -50.70 16 14 C -0.55 -22.66 5.78 71.98 0.42 -22.25 16 15 C 0.01 0.50 1.32 -52.93 -0.07 0.43 16 16 C -0.53 -29.79 8.19 25.60 0.21 -29.58 16 17 H 0.05 2.74 7.83 -2.91 -0.02 2.71 16 18 C 0.04 2.40 5.38 84.66 0.46 2.85 16 19 N -0.89 -48.89 12.98 21.45 0.28 -48.61 16 20 Si 0.93 44.34 29.55 68.60 2.03 46.37 16 21 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 24 C -0.20 -8.58 9.96 30.62 0.30 -8.28 16 25 C -0.14 -6.15 9.49 30.62 0.29 -5.86 16 26 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 0.85 7.46 -2.39 -0.02 0.83 16 29 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.25 8.06 -2.38 -0.02 1.23 16 31 H 0.09 1.05 8.02 -2.39 -0.02 1.03 16 32 H 0.07 1.13 8.00 -2.39 -0.02 1.11 16 33 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.06 1.73 7.92 -2.39 -0.02 1.71 16 37 H 0.42 9.75 8.60 -96.75 -0.83 8.92 16 38 H 0.12 5.28 7.68 -2.39 -0.02 5.26 16 39 H 0.13 4.41 8.09 -2.39 -0.02 4.39 16 40 H 0.27 13.81 8.32 -92.71 -0.77 13.04 16 41 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 42 H 0.08 3.58 8.14 -2.38 -0.02 3.56 16 43 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 44 H 0.09 3.52 8.14 -2.38 -0.02 3.50 16 Total: -1.00 -68.63 365.80 -0.09 -68.71 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: 0.13 Total: 28.63 kcal Atomic # 6 Polarization: -74.49 SS G_CDS: 3.18 Total: -71.31 kcal Atomic # 7 Polarization: -80.78 SS G_CDS: -0.60 Total: -81.38 kcal Atomic # 8 Polarization: -92.28 SS G_CDS: -4.54 Total: -96.82 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: 106.09 SS G_CDS: -0.29 Total: 105.80 kcal Total: -68.63 -0.09 -68.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331925784.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.778 kcal (2) G-P(sol) polarization free energy of solvation -68.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds