Wall clock time and date at job start Tue Mar 31 2020 08:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.50706 * 109.47051 * 240.00237 * 2 1 3 5 5 H 1.07999 * 119.99816 * 240.00290 * 4 2 1 6 6 C 1.37876 * 120.00344 * 60.00147 * 4 2 1 7 7 N 1.31514 * 119.99769 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00300 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46691 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46740 * 119.99592 * 8 6 4 11 11 H 1.48497 * 109.47025 * 239.99950 * 8 6 4 12 12 C 1.52999 * 109.47317 * 120.00367 * 2 1 3 13 13 S 1.81399 * 109.46810 * 299.99960 * 12 2 1 14 14 O 1.42100 * 110.54409 * 291.62399 * 13 12 2 15 15 O 1.42103 * 110.54456 * 68.37178 * 13 12 2 16 16 N 1.65601 * 104.44938 * 179.97438 * 13 12 2 17 17 C 1.49295 * 127.09972 * 90.02649 * 16 13 12 18 18 C 1.56232 * 106.50606 * 171.31787 * 17 16 13 19 19 C 1.52132 * 100.80817 * 336.54691 * 18 17 16 20 20 H 1.09001 * 111.08815 * 285.38925 * 19 18 17 21 21 C 1.51227 * 122.11943 * 151.20929 * 19 18 17 22 22 C 1.55689 * 104.60849 * 218.72941 * 21 19 18 23 23 C 1.56282 * 105.93402 * 7.25377 * 22 21 19 24 24 C 1.42702 * 127.10174 * 269.70755 * 16 13 12 25 25 H 1.09001 * 108.17225 * 103.48794 * 24 16 13 26 26 H 1.09002 * 109.47153 * 299.99992 * 1 2 3 27 27 H 1.09001 * 109.46832 * 59.99801 * 1 2 3 28 28 H 1.08992 * 109.47303 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47140 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47375 * 299.99867 * 3 2 1 31 31 H 1.09002 * 109.47497 * 60.00225 * 3 2 1 32 32 H 0.97000 * 120.00540 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47486 * 179.97438 * 12 2 1 34 34 H 1.09001 * 109.47362 * 59.99268 * 12 2 1 35 35 H 1.08996 * 110.04819 * 290.57648 * 17 16 13 36 36 H 1.08997 * 110.05345 * 52.05245 * 17 16 13 37 37 H 1.08997 * 111.15408 * 94.43759 * 18 17 16 38 38 H 1.09004 * 111.15022 * 218.61976 * 18 17 16 39 39 H 1.09000 * 110.40871 * 337.51758 * 21 19 18 40 40 H 1.09000 * 110.40698 * 99.94901 * 21 19 18 41 41 H 1.09002 * 110.15408 * 126.36242 * 22 21 19 42 42 H 1.08999 * 110.16147 * 248.13212 * 22 21 19 43 43 H 1.09001 * 110.97272 * 142.37382 * 23 22 21 44 44 H 1.09005 * 110.96672 * 266.10084 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0081 9 1 3.1474 -2.2862 -3.6038 10 1 1.1678 -1.5865 -4.8165 11 1 3.1473 -0.1856 -4.8161 12 6 2.0400 -0.7213 1.2492 13 16 1.4353 0.1338 2.7303 14 8 2.0479 1.4099 2.8544 15 8 0.0279 -0.0183 2.8543 16 7 2.0530 -0.7409 3.9935 17 6 3.3611 -0.5291 4.6812 18 6 3.3616 -1.4649 5.9322 19 6 1.8674 -1.6468 6.1530 20 1 1.4227 -0.7501 6.5847 21 6 1.2941 -2.8957 6.7842 22 6 -0.0159 -3.1716 5.9893 23 6 -0.0225 -2.1510 4.8057 24 6 1.4420 -1.8488 4.6536 25 1 1.9269 -2.7611 4.3062 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 0.7081 1.1610 -3.4844 33 1 3.1300 -0.7217 1.2490 34 1 1.6766 -1.7490 1.2492 35 1 4.1812 -0.7960 4.0146 36 1 3.4556 0.5111 4.9925 37 1 3.8453 -2.4164 5.7115 38 1 3.8298 -0.9777 6.7876 39 1 1.9877 -3.7295 6.6752 40 1 1.0704 -2.7213 7.8367 41 1 -0.0144 -4.1918 5.6055 42 1 -0.8841 -3.0112 6.6285 43 1 -0.4263 -2.6054 3.9010 44 1 -0.5785 -1.2513 5.0696 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335235560.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:35 Heat of formation + Delta-G solvation = -66.620578 kcal Electronic energy + Delta-G solvation = -24450.279801 eV Core-core repulsion = 21108.764245 eV Total energy + Delta-G solvation = -3341.515556 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.22842 -36.53202 -36.26395 -35.26225 -34.81841 -31.66125 -31.37779 -27.47878 -26.92133 -26.53491 -25.71307 -25.22694 -22.05191 -21.19874 -20.15431 -19.38634 -18.11093 -17.03313 -16.57383 -15.92867 -15.41439 -15.08193 -14.85607 -14.78175 -14.37559 -13.88570 -13.39669 -13.06815 -12.97265 -12.70346 -12.50316 -12.28762 -12.09858 -12.02336 -11.62474 -11.46891 -11.24754 -11.10703 -11.07345 -10.91361 -10.80235 -10.74851 -10.68428 -10.54908 -10.34068 -10.27049 -10.23628 -10.08263 -9.65056 -9.54493 -8.83317 -8.56013 -8.40504 -6.03429 -4.15353 0.83512 3.08468 3.24775 3.33112 3.35904 3.98118 4.33805 4.41663 4.43560 4.65476 4.76019 4.88960 5.05592 5.12981 5.21327 5.23928 5.34705 5.42668 5.53156 5.60985 5.64895 5.69555 5.74539 5.78879 5.80474 5.91102 5.99024 6.17296 6.27347 6.30960 6.39025 6.40836 6.70433 6.75798 6.80197 6.91260 7.04926 7.31765 7.50743 7.67949 7.98103 8.09868 8.33183 8.83322 9.50043 10.97942 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.025132 B = 0.004419 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.834684 B = 6334.911661 C = 6482.833652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 C -0.163 4.163 4 C -0.501 4.501 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 C -0.581 4.581 13 S 2.605 3.395 14 O -0.962 6.962 15 O -0.955 6.955 16 N -1.004 6.004 17 C 0.123 3.877 18 C -0.115 4.115 19 C -0.121 4.121 20 H 0.084 0.916 21 C -0.109 4.109 22 C -0.120 4.120 23 C -0.117 4.117 24 C 0.130 3.870 25 H 0.057 0.943 26 H 0.028 0.972 27 H 0.095 0.905 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.095 0.905 31 H 0.027 0.973 32 H 0.262 0.738 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.700 -6.973 17.064 18.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.079 3.921 3 C -0.221 4.221 4 C -0.540 4.540 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.723 3.277 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.209 1.209 12 C -0.714 4.714 13 S 2.705 3.295 14 O -0.952 6.952 15 O -0.945 6.945 16 N -0.839 5.839 17 C -0.002 4.002 18 C -0.154 4.154 19 C -0.141 4.141 20 H 0.102 0.898 21 C -0.147 4.147 22 C -0.158 4.158 23 C -0.155 4.155 24 C 0.022 3.978 25 H 0.075 0.925 26 H 0.047 0.953 27 H 0.113 0.887 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.114 0.886 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.050 -6.019 16.951 18.105 hybrid contribution 0.765 -0.998 -1.262 1.781 sum 2.815 -7.017 15.689 17.416 Atomic orbital electron populations 1.22262 0.96855 1.00603 1.02313 1.17944 0.92881 0.92199 0.89089 1.22270 0.99689 0.97829 1.02294 1.20981 1.31615 1.12036 0.89384 0.92302 1.24941 0.94899 0.94986 0.98929 1.69812 1.36366 1.22644 1.23365 0.86479 0.78649 0.79621 0.82905 1.19853 1.20930 1.20922 1.30567 1.11172 1.12801 1.16879 1.05395 0.74546 0.74620 0.74891 1.93524 1.78313 1.37718 1.85690 1.93536 1.28992 1.86418 1.85591 1.58161 1.29384 1.47514 1.48841 1.22521 0.84051 1.00267 0.93354 1.22265 0.95945 0.99988 0.97162 1.22530 0.95874 0.99182 0.96554 0.89788 1.21659 0.96993 0.96941 0.99132 1.22854 0.97543 0.99109 0.96294 1.21924 0.94450 1.00158 0.98990 1.20770 0.95803 0.89202 0.92026 0.92474 0.95344 0.88671 0.94505 0.94514 0.88630 0.95421 0.92799 0.86583 0.86541 0.91281 0.90484 0.90516 0.90379 0.91398 0.91547 0.91362 0.91296 0.90413 0.90114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 7.78 37.16 0.29 -3.77 16 2 C 0.08 2.01 0.52 -155.66 -0.08 1.92 16 3 C -0.16 -4.09 7.77 37.16 0.29 -3.81 16 4 C -0.50 -13.33 8.01 -34.44 -0.28 -13.60 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.88 -24.32 9.35 55.43 0.52 -23.80 16 8 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C -0.58 -11.77 5.12 37.16 0.19 -11.58 16 13 S 2.61 50.55 4.73 -107.50 -0.51 50.05 16 14 O -0.96 -20.94 15.32 -57.54 -0.88 -21.82 16 15 O -0.95 -20.24 13.98 -57.54 -0.80 -21.05 16 16 N -1.00 -15.19 3.52 -104.84 -0.37 -15.56 16 17 C 0.12 1.49 7.13 -0.76 -0.01 1.48 16 18 C -0.12 -1.06 6.70 -25.44 -0.17 -1.23 16 19 C -0.12 -1.26 3.19 -89.70 -0.29 -1.55 16 20 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 21 C -0.11 -0.92 6.57 -26.19 -0.17 -1.10 16 22 C -0.12 -1.11 6.93 -23.54 -0.16 -1.28 16 23 C -0.12 -1.49 5.47 -26.31 -0.14 -1.64 16 24 C 0.13 1.70 2.90 -69.01 -0.20 1.50 16 25 H 0.06 0.69 7.95 -51.93 -0.41 0.28 16 26 H 0.03 0.67 5.46 -51.93 -0.28 0.39 16 27 H 0.09 2.55 6.07 -51.93 -0.32 2.24 16 28 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.10 2.57 6.07 -51.93 -0.32 2.26 16 31 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 32 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.12 2.16 8.14 -51.92 -0.42 1.73 16 34 H 0.12 2.17 8.14 -51.92 -0.42 1.75 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.08 1.14 7.94 -51.93 -0.41 0.73 16 LS Contribution 339.99 15.07 5.12 5.12 Total: -1.00 -31.16 339.99 -10.25 -41.40 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -7.48 Total: 2.91 kcal Atomic # 6 Polarization: -32.18 SS G_CDS: -0.82 Total: -33.00 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.15 Total: -39.36 kcal Atomic # 8 Polarization: -41.18 SS G_CDS: -1.69 Total: -42.87 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 50.55 SS G_CDS: -0.51 Total: 50.05 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.16 -10.25 -41.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335235560.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.216 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds