Wall clock time and date at job start Tue Mar 31 2020 08:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.50706 * 109.47051 * 240.00237 * 2 1 3 5 5 H 1.07999 * 119.99816 * 240.00290 * 4 2 1 6 6 C 1.37876 * 120.00344 * 60.00147 * 4 2 1 7 7 N 1.31514 * 119.99769 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00300 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46691 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46740 * 119.99592 * 8 6 4 11 11 H 1.48497 * 109.47025 * 239.99950 * 8 6 4 12 12 C 1.52999 * 109.47317 * 120.00367 * 2 1 3 13 13 S 1.81399 * 109.46810 * 299.99960 * 12 2 1 14 14 O 1.42100 * 110.54409 * 291.62399 * 13 12 2 15 15 O 1.42103 * 110.54456 * 68.37178 * 13 12 2 16 16 N 1.65601 * 104.44938 * 179.97438 * 13 12 2 17 17 C 1.49295 * 127.09972 * 90.02649 * 16 13 12 18 18 C 1.56232 * 106.50606 * 171.31787 * 17 16 13 19 19 C 1.52132 * 100.80817 * 336.54691 * 18 17 16 20 20 H 1.09001 * 111.08815 * 285.38925 * 19 18 17 21 21 C 1.51227 * 122.11943 * 151.20929 * 19 18 17 22 22 C 1.55689 * 104.60849 * 218.72941 * 21 19 18 23 23 C 1.56282 * 105.93402 * 7.25377 * 22 21 19 24 24 C 1.42702 * 127.10174 * 269.70755 * 16 13 12 25 25 H 1.09001 * 108.17225 * 103.48794 * 24 16 13 26 26 H 1.09002 * 109.47153 * 299.99992 * 1 2 3 27 27 H 1.09001 * 109.46832 * 59.99801 * 1 2 3 28 28 H 1.08992 * 109.47303 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47140 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47375 * 299.99867 * 3 2 1 31 31 H 1.09002 * 109.47497 * 60.00225 * 3 2 1 32 32 H 0.97000 * 120.00540 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47486 * 179.97438 * 12 2 1 34 34 H 1.09001 * 109.47362 * 59.99268 * 12 2 1 35 35 H 1.08996 * 110.04819 * 290.57648 * 17 16 13 36 36 H 1.08997 * 110.05345 * 52.05245 * 17 16 13 37 37 H 1.08997 * 111.15408 * 94.43759 * 18 17 16 38 38 H 1.09004 * 111.15022 * 218.61976 * 18 17 16 39 39 H 1.09000 * 110.40871 * 337.51758 * 21 19 18 40 40 H 1.09000 * 110.40698 * 99.94901 * 21 19 18 41 41 H 1.09002 * 110.15408 * 126.36242 * 22 21 19 42 42 H 1.08999 * 110.16147 * 248.13212 * 22 21 19 43 43 H 1.09001 * 110.97272 * 142.37382 * 23 22 21 44 44 H 1.09005 * 110.96672 * 266.10084 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0081 9 1 3.1474 -2.2862 -3.6038 10 1 1.1678 -1.5865 -4.8165 11 1 3.1473 -0.1856 -4.8161 12 6 2.0400 -0.7213 1.2492 13 16 1.4353 0.1338 2.7303 14 8 2.0479 1.4099 2.8544 15 8 0.0279 -0.0183 2.8543 16 7 2.0530 -0.7409 3.9935 17 6 3.3611 -0.5291 4.6812 18 6 3.3616 -1.4649 5.9322 19 6 1.8674 -1.6468 6.1530 20 1 1.4227 -0.7501 6.5847 21 6 1.2941 -2.8957 6.7842 22 6 -0.0159 -3.1716 5.9893 23 6 -0.0225 -2.1510 4.8057 24 6 1.4420 -1.8488 4.6536 25 1 1.9269 -2.7611 4.3062 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 0.7081 1.1610 -3.4844 33 1 3.1300 -0.7217 1.2490 34 1 1.6766 -1.7490 1.2492 35 1 4.1812 -0.7960 4.0146 36 1 3.4556 0.5111 4.9925 37 1 3.8453 -2.4164 5.7115 38 1 3.8298 -0.9777 6.7876 39 1 1.9877 -3.7295 6.6752 40 1 1.0704 -2.7213 7.8367 41 1 -0.0144 -4.1918 5.6055 42 1 -0.8841 -3.0112 6.6285 43 1 -0.4263 -2.6054 3.9010 44 1 -0.5785 -1.2513 5.0696 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335235560.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:34 Heat of formation + Delta-G solvation = -85.606437 kcal Electronic energy + Delta-G solvation = -24451.103090 eV Core-core repulsion = 21108.764245 eV Total energy + Delta-G solvation = -3342.338845 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.150 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.12867 -38.16969 -38.15289 -36.91240 -35.74798 -33.66283 -32.30121 -28.59540 -28.05435 -27.77169 -27.73953 -27.28307 -23.03686 -22.14689 -21.34011 -20.86994 -19.55497 -18.43395 -17.84080 -17.65412 -16.96426 -16.66880 -16.43333 -15.72322 -15.46317 -15.12497 -14.79539 -14.69902 -14.46777 -14.20385 -13.84799 -13.65655 -13.29597 -13.10740 -13.06166 -12.93239 -12.89026 -12.80081 -12.64563 -12.55888 -12.22887 -12.14921 -12.03898 -11.98945 -11.67998 -11.61591 -11.50635 -11.40004 -11.27449 -11.10526 -10.65165 -10.45081 -9.80719 -8.05716 -6.24849 -0.69221 1.41562 1.44120 1.54184 1.76171 2.42276 2.87086 3.04593 3.14078 3.18355 3.77398 3.84253 3.97118 4.04340 4.10808 4.25050 4.33474 4.47116 4.54792 4.55859 4.61338 4.64140 4.79776 4.80688 4.81959 4.85058 4.94134 5.02360 5.05969 5.08087 5.18663 5.25287 5.28494 5.33470 5.34027 5.42500 5.46638 5.58094 5.61255 5.71455 5.92467 6.07180 6.30554 6.79625 7.43599 8.94551 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.025132 B = 0.004419 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.834684 B = 6334.911661 C = 6482.833652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.069 3.931 3 C -0.158 4.158 4 C -0.518 4.518 5 H 0.062 0.938 6 C 0.018 3.982 7 N -0.908 5.908 8 Si 0.957 3.043 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.282 1.282 12 C -0.584 4.584 13 S 2.622 3.378 14 O -0.990 6.990 15 O -0.980 6.980 16 N -1.003 6.003 17 C 0.107 3.893 18 C -0.103 4.103 19 C -0.112 4.112 20 H 0.071 0.929 21 C -0.102 4.102 22 C -0.113 4.113 23 C -0.127 4.127 24 C 0.107 3.893 25 H 0.074 0.926 26 H 0.031 0.969 27 H 0.071 0.929 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.030 0.970 32 H 0.262 0.738 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.220 -9.154 18.777 21.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.066 3.934 3 C -0.216 4.216 4 C -0.557 4.557 5 H 0.080 0.920 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.782 3.218 9 H -0.190 1.190 10 H -0.208 1.208 11 H -0.208 1.208 12 C -0.716 4.716 13 S 2.722 3.278 14 O -0.981 6.981 15 O -0.970 6.970 16 N -0.841 5.841 17 C -0.017 4.017 18 C -0.141 4.141 19 C -0.133 4.133 20 H 0.089 0.911 21 C -0.140 4.140 22 C -0.151 4.151 23 C -0.166 4.166 24 C -0.001 4.001 25 H 0.092 0.908 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.574 -8.200 18.656 20.690 hybrid contribution 0.270 -0.305 -1.740 1.787 sum 3.844 -8.506 16.916 19.320 Atomic orbital electron populations 1.22180 0.97635 1.00406 1.01304 1.17941 0.92436 0.92135 0.90843 1.22192 0.99784 0.98372 1.01264 1.21299 1.31718 1.12271 0.90385 0.92024 1.25696 0.95115 0.95649 1.01722 1.69949 1.37143 1.23724 1.23878 0.85527 0.78088 0.78708 0.79440 1.18983 1.20820 1.20779 1.30499 1.12226 1.13151 1.15754 1.04520 0.73851 0.74258 0.75179 1.93478 1.78683 1.39703 1.86216 1.93498 1.30699 1.86784 1.86038 1.57783 1.30941 1.47816 1.47549 1.22904 0.82787 1.01035 0.94957 1.22294 0.95242 1.00359 0.96199 1.22563 0.96688 0.99808 0.94229 0.91096 1.21669 0.96415 0.96353 0.99577 1.22848 0.98719 0.98556 0.95023 1.22001 0.94268 1.00225 1.00066 1.21158 0.96083 0.88885 0.93958 0.90819 0.94985 0.90979 0.94218 0.94147 0.90912 0.95136 0.92849 0.84959 0.85124 0.89818 0.91179 0.88460 0.88136 0.89545 0.89918 0.90006 0.90493 0.91833 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.05 7.78 71.98 0.56 -7.49 16 2 C 0.07 3.41 0.52 -52.93 -0.03 3.39 16 3 C -0.16 -8.11 7.77 71.98 0.56 -7.55 16 4 C -0.52 -27.52 8.01 25.60 0.21 -27.31 16 5 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 6 C 0.02 0.94 5.15 84.65 0.44 1.38 16 7 N -0.91 -50.94 9.35 21.45 0.20 -50.74 16 8 Si 0.96 42.50 29.54 68.60 2.03 44.53 16 9 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 12 C -0.58 -23.38 5.12 71.98 0.37 -23.01 16 13 S 2.62 102.00 4.73 -56.49 -0.27 101.73 16 14 O -0.99 -43.53 15.32 -127.65 -1.96 -45.49 16 15 O -0.98 -42.41 13.98 -127.65 -1.78 -44.20 16 16 N -1.00 -29.22 3.52 -485.60 -1.71 -30.93 16 17 C 0.11 2.35 7.13 86.96 0.62 2.97 16 18 C -0.10 -1.50 6.70 31.43 0.21 -1.29 16 19 C -0.11 -2.02 3.19 -10.20 -0.03 -2.05 16 20 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 21 C -0.10 -1.34 6.57 30.94 0.20 -1.13 16 22 C -0.11 -1.82 6.93 32.66 0.23 -1.60 16 23 C -0.13 -3.17 5.47 30.87 0.17 -3.01 16 24 C 0.11 2.60 2.90 46.28 0.13 2.74 16 25 H 0.07 1.57 7.95 -2.39 -0.02 1.55 16 26 H 0.03 1.57 5.46 -2.39 -0.01 1.55 16 27 H 0.07 4.00 6.07 -2.39 -0.01 3.98 16 28 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.07 4.04 6.07 -2.39 -0.01 4.02 16 31 H 0.03 1.50 5.46 -2.39 -0.01 1.49 16 32 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 33 H 0.13 4.77 8.14 -2.39 -0.02 4.75 16 34 H 0.13 4.77 8.14 -2.39 -0.02 4.75 16 35 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 44 H 0.06 1.66 7.94 -2.38 -0.02 1.64 16 Total: -1.00 -67.97 339.99 1.10 -66.87 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.96 Total: 22.19 kcal Atomic # 6 Polarization: -67.59 SS G_CDS: 3.63 Total: -63.96 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -1.51 Total: -81.67 kcal Atomic # 8 Polarization: -85.95 SS G_CDS: -3.74 Total: -89.69 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: 102.00 SS G_CDS: -0.27 Total: 101.73 kcal Total: -67.97 1.10 -66.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335235560.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.740 kcal (2) G-P(sol) polarization free energy of solvation -67.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds