Wall clock time and date at job start Tue Mar 31 2020 08:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50696 * 119.99950 * 2 1 4 4 O 1.42902 * 109.46876 * 135.00139 * 3 2 1 5 5 C 1.35714 * 116.99863 * 180.02562 * 4 3 2 6 6 C 1.38998 * 119.91303 * 0.28766 * 5 4 3 7 7 C 1.37701 * 120.08717 * 180.25873 * 6 5 4 8 8 C 1.39732 * 119.91275 * 359.45388 * 7 6 5 9 9 C 1.47602 * 120.09153 * 180.29772 * 8 7 6 10 10 O 1.21592 * 119.99385 * 330.32945 * 9 8 7 11 11 N 1.34772 * 120.00399 * 150.32517 * 9 8 7 12 12 C 1.46504 * 119.99904 * 6.20906 * 11 9 8 13 13 C 1.50697 * 109.47388 * 98.16522 * 12 11 9 14 14 C 1.30996 * 119.99891 * 125.00226 * 13 12 11 15 15 C 1.46497 * 120.00067 * 186.20509 * 11 9 8 16 16 C 1.50701 * 109.46935 * 90.00230 * 15 11 9 17 17 H 1.08002 * 120.00053 * 0.02562 * 16 15 11 18 18 C 1.37881 * 119.99900 * 179.97438 * 16 15 11 19 19 N 1.31516 * 119.99612 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00120 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47034 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47473 * 119.99788 * 20 18 16 23 23 H 1.48507 * 109.46795 * 240.00296 * 20 18 16 24 24 C 1.39734 * 119.82357 * 0.27404 * 8 7 6 25 25 C 1.37701 * 119.91083 * 0.02562 * 24 8 7 26 26 H 1.07999 * 119.99931 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.00266 * 180.02562 * 1 2 3 28 28 H 1.08005 * 119.99733 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47666 * 14.99891 * 3 2 1 30 30 H 1.09002 * 109.46826 * 254.99637 * 3 2 1 31 31 H 1.08002 * 119.95076 * 0.02562 * 6 5 4 32 32 H 1.07996 * 120.04446 * 179.72258 * 7 6 5 33 33 H 1.08999 * 109.46945 * 218.17260 * 12 11 9 34 34 H 1.09007 * 109.47059 * 338.16699 * 12 11 9 35 35 H 1.08002 * 119.99739 * 304.99850 * 13 12 11 36 36 H 1.08001 * 119.99620 * 180.02562 * 14 13 12 37 37 H 1.08002 * 120.00370 * 359.97438 * 14 13 12 38 38 H 1.09001 * 109.46921 * 210.00301 * 15 11 9 39 39 H 1.08992 * 109.47466 * 330.00281 * 15 11 9 40 40 H 0.97007 * 119.99385 * 180.02562 * 19 18 16 41 41 H 1.07994 * 120.04531 * 180.02562 * 24 8 7 42 42 H 1.08005 * 119.96044 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9080 2.3437 1.0788 6 6 3.6507 3.4680 0.3031 7 6 4.4444 4.5867 0.4244 8 6 5.5026 4.5947 1.3368 9 6 6.3518 5.7941 1.4747 10 8 6.5251 6.5291 0.5217 11 7 6.9351 6.0746 2.6568 12 6 6.8392 5.1216 3.7654 13 6 8.0971 4.2941 3.8268 14 6 8.7900 4.2370 4.9370 15 6 7.6651 7.3325 2.8333 16 6 6.7209 8.3953 3.3333 17 1 5.6812 8.1574 3.5031 18 6 7.1846 9.6711 3.5750 19 7 8.4511 9.9602 3.3697 20 14 6.0145 10.9883 4.1955 21 1 4.6541 10.4117 4.3444 22 1 6.4866 11.4901 5.5110 23 1 5.9723 12.1105 3.2237 24 6 5.7545 3.4645 2.1188 25 6 4.9600 2.3475 1.9873 26 1 -0.5400 0.9353 0.0004 27 1 -0.5401 -0.9353 0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.3856 2.1161 0.2659 30 1 2.4755 1.4867 -0.9927 31 1 2.8294 3.4628 -0.3983 32 1 4.2466 5.4583 -0.1819 33 1 6.7157 5.6652 4.7021 34 1 5.9813 4.4676 3.6091 35 1 8.4272 3.7480 2.9554 36 1 9.6917 3.6442 4.9808 37 1 8.4601 4.7833 5.8082 38 1 8.4668 7.1887 3.5576 39 1 8.0893 7.6434 1.8787 40 1 8.7774 10.8577 3.5401 41 1 6.5712 3.4669 2.8255 42 1 5.1537 1.4736 2.5916 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359391385.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:24 Heat of formation + Delta-G solvation = 27.374131 kcal Electronic energy + Delta-G solvation = -23662.854871 eV Core-core repulsion = 20189.971280 eV Total energy + Delta-G solvation = -3472.883591 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.50917 -39.29251 -37.03359 -35.92665 -34.40623 -33.22433 -32.10401 -31.11496 -30.28418 -27.44260 -26.97553 -25.68903 -23.70604 -22.58994 -21.90687 -20.31519 -20.13167 -18.89686 -18.30315 -16.91636 -16.46938 -16.42932 -16.06642 -15.71674 -15.14453 -14.63191 -14.48754 -14.34210 -13.94292 -13.70004 -13.48330 -13.17052 -13.07750 -12.74456 -12.61523 -12.17306 -11.98485 -11.67047 -11.39289 -11.27120 -11.15195 -11.02973 -10.88670 -10.63457 -10.55447 -10.18195 -9.91765 -9.64026 -9.30040 -9.02728 -8.85828 -8.43215 -8.18375 -7.67026 -6.03761 -4.08545 1.13629 1.35415 1.65158 2.40108 3.10875 3.29969 3.31815 3.37728 3.42080 3.87741 4.17107 4.42010 4.45399 4.62028 4.75309 4.86030 4.92466 5.00822 5.05764 5.22432 5.30489 5.31696 5.33828 5.39689 5.46304 5.58231 5.65862 5.99729 6.02952 6.08687 6.14915 6.17833 6.22329 6.30136 6.50543 6.64715 6.77240 6.90075 7.11593 7.26385 7.46939 7.55034 7.93101 8.23999 8.39661 8.89800 9.07238 9.56442 11.04331 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.017841 B = 0.003332 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.004398 B = 8401.053646 C = 9252.588003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.155 4.155 3 C 0.084 3.916 4 O -0.311 6.311 5 C 0.140 3.860 6 C -0.218 4.218 7 C -0.025 4.025 8 C -0.155 4.155 9 C 0.550 3.450 10 O -0.540 6.540 11 N -0.584 5.584 12 C 0.106 3.894 13 C -0.179 4.179 14 C -0.170 4.170 15 C 0.246 3.754 16 C -0.527 4.527 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.893 5.893 20 Si 0.898 3.102 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.081 4.081 25 C -0.161 4.161 26 H 0.100 0.900 27 H 0.107 0.893 28 H 0.120 0.880 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.130 0.870 32 H 0.135 0.865 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.034 0.966 39 H 0.046 0.954 40 H 0.263 0.737 41 H 0.166 0.834 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.523 -20.259 -2.323 22.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.173 4.173 3 C 0.010 3.990 4 O -0.225 6.225 5 C 0.094 3.906 6 C -0.237 4.237 7 C -0.044 4.044 8 C -0.159 4.159 9 C 0.338 3.662 10 O -0.418 6.418 11 N -0.314 5.314 12 C -0.017 4.017 13 C -0.199 4.199 14 C -0.208 4.208 15 C 0.127 3.873 16 C -0.566 4.566 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.532 5.532 20 Si 0.725 3.275 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.098 4.098 25 C -0.179 4.179 26 H 0.118 0.882 27 H 0.126 0.874 28 H 0.138 0.862 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.147 0.853 32 H 0.153 0.847 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.127 0.873 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.183 0.817 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.281 -19.854 -2.707 22.521 hybrid contribution -0.653 0.948 0.202 1.169 sum -10.933 -18.906 -2.505 21.983 Atomic orbital electron populations 1.23898 0.95442 1.02613 0.98989 1.22676 0.95656 0.97799 1.01178 1.21852 0.87981 0.96832 0.92380 1.86027 1.42059 1.35906 1.58481 1.19211 0.90907 0.85628 0.94819 1.21148 1.03979 0.94211 1.04382 1.21035 0.91638 0.97375 0.94365 1.20175 0.99560 0.95833 1.00297 1.18087 0.80217 0.84497 0.83441 1.90747 1.62137 1.50819 1.38110 1.48085 1.52667 1.20616 1.10059 1.21390 0.95969 0.91889 0.92493 1.23352 0.98453 0.99591 0.98456 1.23857 0.98634 1.00323 0.97959 1.19312 0.91471 0.78126 0.98378 1.21482 0.95940 0.94864 1.44295 0.92363 1.24936 0.95244 0.98346 0.95569 1.69953 1.13749 1.20781 1.48766 0.86448 0.81039 0.81647 0.78330 1.19781 1.20955 1.20872 1.22293 0.99580 0.91219 0.96757 1.20373 0.96402 0.99904 1.01262 0.88170 0.87449 0.86241 0.91280 0.90841 0.85258 0.84673 0.89752 0.88046 0.87279 0.88549 0.88121 0.94763 0.93620 0.92774 0.81716 0.84850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 14.31 29.01 0.42 -0.60 16 2 C -0.16 -1.12 9.89 -36.03 -0.36 -1.48 16 3 C 0.08 0.72 5.15 36.00 0.19 0.90 16 4 O -0.31 -3.56 10.11 -18.85 -0.19 -3.75 16 5 C 0.14 1.77 6.70 -39.02 -0.26 1.51 16 6 C -0.22 -2.79 9.01 -39.50 -0.36 -3.14 16 7 C -0.03 -0.39 9.59 -39.22 -0.38 -0.77 16 8 C -0.16 -2.69 5.59 -104.96 -0.59 -3.28 16 9 C 0.55 12.12 7.45 -12.44 -0.09 12.03 16 10 O -0.54 -14.08 16.25 5.28 0.09 -14.00 16 11 N -0.58 -12.76 2.45 -177.64 -0.43 -13.19 16 12 C 0.11 1.77 5.33 -5.19 -0.03 1.74 16 13 C -0.18 -2.58 8.22 -36.03 -0.30 -2.87 16 14 C -0.17 -2.19 14.32 29.02 0.42 -1.77 16 15 C 0.25 6.53 5.21 -5.19 -0.03 6.51 16 16 C -0.53 -15.06 9.39 -34.44 -0.32 -15.38 16 17 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 20 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 C -0.08 -1.14 7.47 -39.22 -0.29 -1.44 16 25 C -0.16 -2.02 9.97 -39.50 -0.39 -2.42 16 26 H 0.10 0.53 7.90 -52.49 -0.41 0.11 16 27 H 0.11 0.48 8.06 -52.48 -0.42 0.06 16 28 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 29 H 0.07 0.54 7.36 -51.93 -0.38 0.15 16 30 H 0.07 0.56 7.67 -51.93 -0.40 0.16 16 31 H 0.13 1.30 6.28 -52.49 -0.33 0.97 16 32 H 0.14 2.13 7.91 -52.49 -0.42 1.72 16 33 H 0.08 1.45 7.78 -51.93 -0.40 1.05 16 34 H 0.10 1.49 4.06 -52.00 -0.21 1.28 16 35 H 0.11 1.48 7.58 -52.49 -0.40 1.09 16 36 H 0.10 1.06 8.06 -52.49 -0.42 0.63 16 37 H 0.10 1.28 7.84 -52.49 -0.41 0.86 16 38 H 0.03 0.92 8.07 -51.93 -0.42 0.50 16 39 H 0.05 1.37 7.34 -51.93 -0.38 0.99 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.17 2.15 2.81 -52.49 -0.15 2.00 16 42 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 356.96 15.07 5.38 5.38 Total: -1.00 -33.76 356.96 -7.46 -41.22 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.55 Total: 2.17 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -2.47 Total: -8.79 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.30 Total: -39.16 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.10 Total: -17.75 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.76 -7.46 -41.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359391385.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.598 kcal (2) G-P(sol) polarization free energy of solvation -33.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds