Wall clock time and date at job start Tue Mar 31 2020 09:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47015 * 2 1 4 4 O 1.42901 * 109.47208 * 119.99724 * 2 1 3 5 5 C 1.42898 * 114.00122 * 150.00283 * 4 2 1 6 6 H 1.08992 * 112.84944 * 18.80271 * 5 4 2 7 7 C 1.53787 * 113.68825 * 247.53936 * 5 4 2 8 8 C 1.53784 * 87.07812 * 270.86978 * 7 5 4 9 9 H 1.09006 * 113.68698 * 89.13182 * 8 7 5 10 10 N 1.46499 * 113.61488 * 220.01839 * 8 7 5 11 11 C 1.34784 * 119.99971 * 252.49901 * 10 8 7 12 12 O 1.21274 * 119.99897 * 359.72827 * 11 10 8 13 13 C 1.50695 * 119.99635 * 179.97438 * 11 10 8 14 14 S 1.81006 * 109.46975 * 180.02562 * 13 11 10 15 15 C 1.76200 * 100.00155 * 179.97438 * 14 13 11 16 16 H 1.08005 * 119.99670 * 0.02562 * 15 14 13 17 17 C 1.38796 * 120.00050 * 180.02562 * 15 14 13 18 18 N 1.31626 * 119.99898 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00049 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47184 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47541 * 119.99901 * 19 17 15 22 22 H 1.48497 * 109.47123 * 239.99909 * 19 17 15 23 23 C 1.53775 * 87.08300 * 334.56817 * 8 7 5 24 24 C 1.53006 * 113.61323 * 139.97923 * 23 8 7 25 25 C 1.52997 * 113.61802 * 270.88255 * 23 8 7 26 26 H 1.08999 * 109.47490 * 300.00401 * 1 2 3 27 27 H 1.09007 * 109.47021 * 59.99950 * 1 2 3 28 28 H 1.08996 * 109.47093 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47052 * 239.99808 * 2 1 3 30 30 H 1.08994 * 109.47015 * 299.99649 * 3 2 1 31 31 H 1.08998 * 109.46867 * 60.00112 * 3 2 1 32 32 H 1.08999 * 109.46951 * 179.97438 * 3 2 1 33 33 H 1.08996 * 113.61551 * 156.32779 * 7 5 4 34 34 H 1.09001 * 113.61646 * 25.41902 * 7 5 4 35 35 H 0.96999 * 119.99984 * 72.49748 * 10 8 7 36 36 H 1.09005 * 109.47403 * 300.00056 * 13 11 10 37 37 H 1.09002 * 109.47422 * 60.00295 * 13 11 10 38 38 H 0.97005 * 120.00072 * 180.02562 * 18 17 15 39 39 H 1.08994 * 109.46849 * 60.00609 * 24 23 8 40 40 H 1.09008 * 109.46720 * 179.97438 * 24 23 8 41 41 H 1.09002 * 109.47346 * 299.99852 * 24 23 8 42 42 H 1.09005 * 109.46906 * 59.99637 * 25 23 8 43 43 H 1.08991 * 109.47529 * 180.02562 * 25 23 8 44 44 H 1.09002 * 109.46621 * 300.00420 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2660 -1.3244 0.9887 6 1 3.8179 -0.9496 0.1268 7 6 3.1823 -2.8589 1.0468 8 6 3.4010 -2.7348 2.5639 9 1 2.4771 -2.6254 3.1320 10 7 4.2893 -3.7613 3.1147 11 6 3.7826 -4.7570 3.8688 12 8 2.5920 -4.8002 4.0955 13 6 4.6964 -5.8132 4.4349 14 16 3.7240 -7.0015 5.3933 15 6 5.0050 -8.0901 5.9212 16 1 6.0278 -7.9018 5.6298 17 6 4.6997 -9.1895 6.7114 18 7 3.4532 -9.4187 7.0669 19 14 6.0578 -10.3431 7.2716 20 1 7.3611 -9.8678 6.7415 21 1 6.1058 -10.3676 8.7557 22 1 5.7863 -11.7115 6.7626 23 6 4.1074 -1.4001 2.2737 24 6 3.7802 -0.3006 3.2862 25 6 5.6085 -1.5445 2.0157 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 3.9989 -3.3606 0.5277 34 1 2.2025 -3.2533 0.7776 35 1 5.2421 -3.7245 2.9367 36 1 5.2018 -6.3312 3.6198 37 1 5.4374 -5.3438 5.0819 38 1 3.2398 -10.1869 7.6195 39 1 4.0866 -0.6209 4.2819 40 1 4.3143 0.6110 3.0178 41 1 2.7073 -0.1087 3.2802 42 1 5.7683 -2.1915 1.1531 43 1 6.0395 -0.5630 1.8189 44 1 6.0872 -1.9822 2.8917 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361661588.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:33 Heat of formation + Delta-G solvation = -76.607984 kcal Electronic energy + Delta-G solvation = -22585.425713 eV Core-core repulsion = 19243.477070 eV Total energy + Delta-G solvation = -3341.948643 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.79636 -38.67746 -37.24250 -33.36987 -32.41425 -32.36779 -30.62126 -29.01618 -27.66602 -27.53651 -25.50069 -24.22109 -22.74590 -21.49620 -20.26084 -19.03251 -17.79581 -17.11442 -16.32306 -15.85042 -15.56268 -14.95262 -14.84649 -14.78702 -14.33992 -14.14467 -14.00321 -13.38671 -13.33555 -12.92834 -12.70562 -12.59472 -12.53214 -12.42247 -12.38889 -12.22046 -12.03026 -11.86813 -11.51151 -11.32748 -11.05832 -10.99775 -10.92491 -10.74252 -10.70907 -10.27164 -9.76960 -9.59746 -9.29248 -9.05672 -8.72829 -8.19695 -6.47034 -6.19691 -3.89740 3.09199 3.14172 3.22780 3.25012 3.30181 3.35893 3.79996 4.21518 4.22388 4.31800 4.61005 4.67751 4.78672 4.79605 4.89292 4.98949 5.01151 5.15445 5.19135 5.27332 5.35522 5.41910 5.42671 5.48469 5.53441 5.54731 5.64950 5.71381 5.74851 5.83509 5.86246 5.90333 5.92320 5.94107 6.09750 6.15109 6.17556 6.32167 6.75880 7.09144 7.61796 7.80378 8.37461 8.69637 9.25673 10.87796 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.034361 B = 0.002661 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.693135 B =10519.525317 C =10954.732610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.081 3.919 3 C -0.174 4.174 4 O -0.353 6.353 5 C 0.076 3.924 6 H 0.075 0.925 7 C -0.173 4.173 8 C 0.144 3.856 9 H 0.119 0.881 10 N -0.729 5.729 11 C 0.531 3.469 12 O -0.517 6.517 13 C -0.154 4.154 14 S -0.061 6.061 15 C -0.534 4.534 16 H 0.073 0.927 17 C 0.072 3.928 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.093 4.093 24 C -0.132 4.132 25 C -0.134 4.134 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.397 0.603 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.268 0.732 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.105 21.503 -16.036 26.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 C -0.232 4.232 4 O -0.272 6.272 5 C 0.017 3.983 6 H 0.093 0.907 7 C -0.212 4.212 8 C 0.038 3.962 9 H 0.136 0.864 10 N -0.383 5.383 11 C 0.318 3.682 12 O -0.391 6.391 13 C -0.304 4.304 14 S 0.166 5.834 15 C -0.682 4.682 16 H 0.091 0.909 17 C -0.137 4.137 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.094 4.094 24 C -0.189 4.189 25 C -0.191 4.191 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.232 0.768 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.121 21.300 -15.370 26.267 hybrid contribution 2.864 -0.698 -0.258 2.959 sum 2.743 20.603 -15.628 26.005 Atomic orbital electron populations 1.21867 0.93535 1.02969 1.02432 1.22148 0.95079 0.92296 0.88181 1.22319 1.01448 0.96890 1.02503 1.87938 1.35304 1.69037 1.34917 1.22982 0.85337 0.92658 0.97294 0.90660 1.23972 1.03275 0.95968 0.97991 1.22444 0.94712 0.85869 0.93183 0.86366 1.46054 1.10973 1.27219 1.54014 1.20335 0.89087 0.81595 0.77216 1.90696 1.16087 1.74615 1.57654 1.23541 1.02818 1.00159 1.03932 1.85413 1.11399 1.24564 1.62018 1.22910 0.94949 1.12767 1.37613 0.90919 1.24996 0.96273 0.97090 0.95308 1.70031 1.17382 1.28170 1.34706 0.86117 0.80957 0.79976 0.78434 1.19642 1.20575 1.20588 1.22519 0.95131 0.96169 0.95600 1.21601 1.02724 0.96696 0.97919 1.21599 0.93040 1.02348 1.02123 0.91712 0.91399 0.91786 0.92237 0.91852 0.91732 0.92551 0.89112 0.90307 0.76807 0.89332 0.89302 0.92259 0.92511 0.92934 0.91077 0.92028 0.91831 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.56 37.16 0.36 -0.76 16 2 C 0.08 0.64 3.22 -26.73 -0.09 0.56 16 3 C -0.17 -1.15 9.53 37.16 0.35 -0.80 16 4 O -0.35 -3.68 8.46 -35.23 -0.30 -3.98 16 5 C 0.08 0.72 3.61 -25.92 -0.09 0.62 16 6 H 0.08 0.58 7.72 -51.93 -0.40 0.18 16 7 C -0.17 -1.90 7.36 -25.91 -0.19 -2.09 16 8 C 0.14 1.85 3.63 -67.12 -0.24 1.61 16 9 H 0.12 1.89 7.42 -51.93 -0.39 1.51 16 10 N -0.73 -10.18 5.23 -53.02 -0.28 -10.46 16 11 C 0.53 10.23 7.85 -10.98 -0.09 10.14 16 12 O -0.52 -12.12 15.46 5.56 0.09 -12.03 16 13 C -0.15 -3.16 6.16 36.00 0.22 -2.94 16 14 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 15 C -0.53 -15.37 9.50 30.94 0.29 -15.07 16 16 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 17 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 18 N -0.87 -26.42 13.22 55.49 0.73 -25.68 16 19 Si 0.92 21.58 29.55 -169.99 -5.02 16.55 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 23 C -0.09 -0.90 1.35 -153.70 -0.21 -1.11 16 24 C -0.13 -1.32 9.04 37.16 0.34 -0.99 16 25 C -0.13 -1.02 8.06 37.16 0.30 -0.72 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.43 7.72 -51.93 -0.40 0.03 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.88 7.65 -51.93 -0.40 0.49 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.40 4.39 6.66 -40.82 -0.27 4.11 16 36 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 37 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 38 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 41 H 0.07 0.79 6.96 -51.93 -0.36 0.43 16 42 H 0.06 0.42 7.34 -51.93 -0.38 0.04 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.52 7.10 -51.93 -0.37 0.16 16 LS Contribution 370.56 15.07 5.58 5.58 Total: -1.00 -34.22 370.56 -8.13 -42.36 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -7.59 Total: 1.11 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 0.86 Total: -9.56 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.46 Total: -36.14 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.21 Total: -16.01 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.22 -8.13 -42.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361661588.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.249 kcal (2) G-P(sol) polarization free energy of solvation -34.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds