Wall clock time and date at job start Tue Mar 31 2020 09:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47015 * 2 1 4 4 O 1.42901 * 109.47208 * 119.99724 * 2 1 3 5 5 C 1.42898 * 114.00122 * 150.00283 * 4 2 1 6 6 H 1.08992 * 112.84944 * 18.80271 * 5 4 2 7 7 C 1.53787 * 113.68825 * 247.53936 * 5 4 2 8 8 C 1.53784 * 87.07812 * 270.86978 * 7 5 4 9 9 H 1.09006 * 113.68698 * 89.13182 * 8 7 5 10 10 N 1.46499 * 113.61488 * 220.01839 * 8 7 5 11 11 C 1.34784 * 119.99971 * 252.49901 * 10 8 7 12 12 O 1.21274 * 119.99897 * 359.72827 * 11 10 8 13 13 C 1.50695 * 119.99635 * 179.97438 * 11 10 8 14 14 S 1.81006 * 109.46975 * 180.02562 * 13 11 10 15 15 C 1.76200 * 100.00155 * 179.97438 * 14 13 11 16 16 H 1.08005 * 119.99670 * 0.02562 * 15 14 13 17 17 C 1.38796 * 120.00050 * 180.02562 * 15 14 13 18 18 N 1.31626 * 119.99898 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00049 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47184 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47541 * 119.99901 * 19 17 15 22 22 H 1.48497 * 109.47123 * 239.99909 * 19 17 15 23 23 C 1.53775 * 87.08300 * 334.56817 * 8 7 5 24 24 C 1.53006 * 113.61323 * 139.97923 * 23 8 7 25 25 C 1.52997 * 113.61802 * 270.88255 * 23 8 7 26 26 H 1.08999 * 109.47490 * 300.00401 * 1 2 3 27 27 H 1.09007 * 109.47021 * 59.99950 * 1 2 3 28 28 H 1.08996 * 109.47093 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47052 * 239.99808 * 2 1 3 30 30 H 1.08994 * 109.47015 * 299.99649 * 3 2 1 31 31 H 1.08998 * 109.46867 * 60.00112 * 3 2 1 32 32 H 1.08999 * 109.46951 * 179.97438 * 3 2 1 33 33 H 1.08996 * 113.61551 * 156.32779 * 7 5 4 34 34 H 1.09001 * 113.61646 * 25.41902 * 7 5 4 35 35 H 0.96999 * 119.99984 * 72.49748 * 10 8 7 36 36 H 1.09005 * 109.47403 * 300.00056 * 13 11 10 37 37 H 1.09002 * 109.47422 * 60.00295 * 13 11 10 38 38 H 0.97005 * 120.00072 * 180.02562 * 18 17 15 39 39 H 1.08994 * 109.46849 * 60.00609 * 24 23 8 40 40 H 1.09008 * 109.46720 * 179.97438 * 24 23 8 41 41 H 1.09002 * 109.47346 * 299.99852 * 24 23 8 42 42 H 1.09005 * 109.46906 * 59.99637 * 25 23 8 43 43 H 1.08991 * 109.47529 * 180.02562 * 25 23 8 44 44 H 1.09002 * 109.46621 * 300.00420 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2660 -1.3244 0.9887 6 1 3.8179 -0.9496 0.1268 7 6 3.1823 -2.8589 1.0468 8 6 3.4010 -2.7348 2.5639 9 1 2.4771 -2.6254 3.1320 10 7 4.2893 -3.7613 3.1147 11 6 3.7826 -4.7570 3.8688 12 8 2.5920 -4.8002 4.0955 13 6 4.6964 -5.8132 4.4349 14 16 3.7240 -7.0015 5.3933 15 6 5.0050 -8.0901 5.9212 16 1 6.0278 -7.9018 5.6298 17 6 4.6997 -9.1895 6.7114 18 7 3.4532 -9.4187 7.0669 19 14 6.0578 -10.3431 7.2716 20 1 7.3611 -9.8678 6.7415 21 1 6.1058 -10.3676 8.7557 22 1 5.7863 -11.7115 6.7626 23 6 4.1074 -1.4001 2.2737 24 6 3.7802 -0.3006 3.2862 25 6 5.6085 -1.5445 2.0157 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 3.9989 -3.3606 0.5277 34 1 2.2025 -3.2533 0.7776 35 1 5.2421 -3.7245 2.9367 36 1 5.2018 -6.3312 3.6198 37 1 5.4374 -5.3438 5.0819 38 1 3.2398 -10.1869 7.6195 39 1 4.0866 -0.6209 4.2819 40 1 4.3143 0.6110 3.0178 41 1 2.7073 -0.1087 3.2802 42 1 5.7683 -2.1915 1.1531 43 1 6.0395 -0.5630 1.8189 44 1 6.0872 -1.9822 2.8917 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361661588.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:32 Heat of formation + Delta-G solvation = -99.254764 kcal Electronic energy + Delta-G solvation = -22586.407751 eV Core-core repulsion = 19243.477070 eV Total energy + Delta-G solvation = -3342.930681 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.75723 -40.02169 -38.10078 -34.65185 -34.56318 -33.10828 -31.57011 -30.50433 -28.35174 -28.09256 -27.68849 -25.26708 -23.58405 -22.11985 -21.71293 -20.16034 -19.54701 -18.05192 -17.86341 -16.88821 -16.79166 -16.54681 -16.19174 -15.91251 -15.71276 -15.07068 -15.01777 -14.70504 -14.49452 -14.25293 -13.75809 -13.62909 -13.29560 -13.20615 -13.16723 -13.05993 -12.99587 -12.93760 -12.91334 -12.70069 -12.59456 -12.33342 -12.06200 -11.74693 -11.61234 -11.51515 -11.16030 -11.14203 -10.85210 -10.33265 -10.26882 -9.96369 -8.67317 -8.34793 -6.13123 1.27189 1.41582 1.47442 1.58574 1.60557 2.26423 2.32399 2.58613 2.99346 3.32215 3.37526 3.51776 3.81728 3.95632 3.98323 4.05080 4.16344 4.25261 4.30186 4.32006 4.33910 4.49495 4.55233 4.69964 4.77151 4.77471 4.84263 4.91795 4.94299 4.96720 5.00437 5.03466 5.11481 5.15699 5.30088 5.36185 5.39517 5.41910 5.46190 5.59542 6.20041 6.42260 6.53522 7.06379 7.26991 8.74805 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.034361 B = 0.002661 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.693135 B =10519.525317 C =10954.732610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.073 3.927 3 C -0.169 4.169 4 O -0.378 6.378 5 C 0.085 3.915 6 H 0.105 0.895 7 C -0.169 4.169 8 C 0.125 3.875 9 H 0.078 0.922 10 N -0.700 5.700 11 C 0.532 3.468 12 O -0.569 6.569 13 C -0.128 4.128 14 S -0.155 6.155 15 C -0.544 4.544 16 H 0.084 0.916 17 C 0.011 3.989 18 N -0.912 5.912 19 Si 1.001 2.999 20 H -0.256 1.256 21 H -0.274 1.274 22 H -0.274 1.274 23 C -0.079 4.079 24 C -0.131 4.131 25 C -0.134 4.134 26 H 0.054 0.946 27 H 0.089 0.911 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.111 0.889 34 H 0.058 0.942 35 H 0.415 0.585 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.271 0.729 39 H 0.045 0.955 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.252 22.708 -17.864 29.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.016 3.984 3 C -0.226 4.226 4 O -0.297 6.297 5 C 0.026 3.974 6 H 0.123 0.877 7 C -0.208 4.208 8 C 0.020 3.980 9 H 0.097 0.903 10 N -0.354 5.354 11 C 0.318 3.682 12 O -0.447 6.447 13 C -0.280 4.280 14 S 0.072 5.928 15 C -0.691 4.691 16 H 0.102 0.898 17 C -0.194 4.194 18 N -0.549 5.549 19 Si 0.823 3.177 20 H -0.179 1.179 21 H -0.200 1.200 22 H -0.199 1.199 23 C -0.081 4.081 24 C -0.188 4.188 25 C -0.191 4.191 26 H 0.073 0.927 27 H 0.108 0.892 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.130 0.870 34 H 0.077 0.923 35 H 0.254 0.746 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.065 22.552 -17.237 28.550 hybrid contribution 1.830 -0.948 0.242 2.075 sum 4.895 21.605 -16.995 27.921 Atomic orbital electron populations 1.21894 0.93666 1.02244 1.03037 1.22356 0.95139 0.93133 0.87766 1.22272 1.01723 0.95779 1.02846 1.87938 1.35962 1.69345 1.36448 1.22972 0.85237 0.91247 0.97945 0.87723 1.23995 1.02970 0.97821 0.96050 1.22595 0.93870 0.87575 0.93936 0.90333 1.45797 1.12112 1.25603 1.51903 1.20174 0.88100 0.82292 0.77652 1.90686 1.18109 1.75976 1.59929 1.23376 1.02016 0.98794 1.03769 1.85637 1.15200 1.27700 1.64251 1.23231 0.95100 1.13016 1.37800 0.89826 1.26164 0.99057 0.98978 0.95158 1.70199 1.20019 1.29069 1.35610 0.84875 0.77725 0.77190 0.77956 1.17913 1.19951 1.19926 1.22515 0.96705 0.93356 0.95485 1.21574 1.01869 0.97772 0.97573 1.21659 0.90695 1.03978 1.02772 0.92657 0.89246 0.93170 0.91067 0.90203 0.92705 0.92004 0.87033 0.92319 0.74580 0.87085 0.87195 0.92012 0.93612 0.90826 0.92857 0.90530 0.89884 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.56 71.98 0.69 -1.48 16 2 C 0.07 1.06 3.22 30.60 0.10 1.16 16 3 C -0.17 -1.87 9.53 71.98 0.69 -1.18 16 4 O -0.38 -7.64 8.46 -148.98 -1.26 -8.90 16 5 C 0.08 1.42 3.61 31.12 0.11 1.53 16 6 H 0.11 1.19 7.72 -2.39 -0.02 1.18 16 7 C -0.17 -3.53 7.36 31.12 0.23 -3.30 16 8 C 0.13 3.21 3.63 45.52 0.17 3.38 16 9 H 0.08 2.69 7.42 -2.38 -0.02 2.67 16 10 N -0.70 -18.84 5.23 -440.04 -2.30 -21.14 16 11 C 0.53 20.63 7.85 87.65 0.69 21.32 16 12 O -0.57 -27.98 15.46 -3.01 -0.05 -28.03 16 13 C -0.13 -5.21 6.16 71.23 0.44 -4.77 16 14 S -0.16 -8.81 20.57 -56.49 -1.16 -9.97 16 15 C -0.54 -31.38 9.50 67.95 0.65 -30.74 16 16 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 17 C 0.01 0.63 5.49 84.86 0.47 1.09 16 18 N -0.91 -56.81 13.22 21.65 0.29 -56.52 16 19 Si 1.00 43.95 29.55 68.60 2.03 45.98 16 20 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 23 C -0.08 -1.39 1.35 -51.66 -0.07 -1.46 16 24 C -0.13 -2.48 9.04 71.98 0.65 -1.83 16 25 C -0.13 -1.52 8.06 71.98 0.58 -0.94 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 0.86 7.72 -2.39 -0.02 0.84 16 30 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.11 1.85 7.65 -2.39 -0.02 1.83 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.42 8.06 6.66 -92.71 -0.62 7.44 16 36 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 37 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 38 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 39 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.05 1.20 6.96 -2.39 -0.02 1.18 16 42 H 0.08 0.68 7.34 -2.38 -0.02 0.66 16 43 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.07 0.80 7.10 -2.39 -0.02 0.78 16 Total: -1.00 -78.38 370.56 3.28 -75.10 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.35 Total: 20.71 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 5.38 Total: -17.23 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -2.01 Total: -77.67 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -1.31 Total: -36.93 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -1.16 Total: -9.97 kcal Total: -78.38 3.28 -75.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361661588.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.155 kcal (2) G-P(sol) polarization free energy of solvation -78.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds