Wall clock time and date at job start Tue Mar 31 2020 07:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34777 * 119.99858 * 2 1 4 4 O 1.21279 * 120.00166 * 180.02562 * 3 2 1 5 5 C 1.50706 * 119.99762 * 0.02562 * 3 2 1 6 6 S 1.81003 * 109.46853 * 179.97438 * 5 3 2 7 7 C 1.76196 * 99.99846 * 179.97438 * 6 5 3 8 8 H 1.07998 * 120.00030 * 359.97438 * 7 6 5 9 9 C 1.38802 * 119.99637 * 180.02562 * 7 6 5 10 10 N 1.31633 * 119.99688 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00457 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47357 * 89.99660 * 11 9 7 13 13 H 1.48495 * 109.47496 * 209.99879 * 11 9 7 14 14 H 1.48500 * 109.46916 * 330.00121 * 11 9 7 15 15 C 1.46496 * 119.99884 * 180.02562 * 2 1 3 16 16 C 1.53773 * 113.62044 * 37.49434 * 15 2 1 17 17 C 1.53780 * 87.08355 * 220.01876 * 16 15 2 18 18 O 1.42897 * 113.61170 * 139.97846 * 17 16 15 19 19 C 1.42903 * 113.99851 * 112.50538 * 18 17 16 20 20 C 1.53001 * 109.47373 * 59.99560 * 19 18 17 21 21 C 1.53002 * 109.47286 * 179.97438 * 19 18 17 22 22 C 1.53004 * 109.46908 * 299.99316 * 19 18 17 23 23 C 1.53778 * 87.07990 * 25.43274 * 17 16 15 24 24 H 1.08999 * 109.47441 * 89.99653 * 1 2 3 25 25 H 1.09005 * 109.47121 * 209.99861 * 1 2 3 26 26 H 1.08997 * 109.47160 * 329.99513 * 1 2 3 27 27 H 1.09000 * 109.47318 * 299.99141 * 5 3 2 28 28 H 1.09000 * 109.47161 * 59.99772 * 5 3 2 29 29 H 0.97002 * 120.00245 * 179.97438 * 10 9 7 30 30 H 1.09003 * 112.84932 * 168.80095 * 15 2 1 31 31 H 1.09010 * 113.61067 * 334.56814 * 16 15 2 32 32 H 1.09006 * 113.61718 * 105.46765 * 16 15 2 33 33 H 1.08993 * 113.61155 * 270.88001 * 17 16 15 34 34 H 1.09003 * 109.46701 * 59.99941 * 20 19 18 35 35 H 1.08999 * 109.47291 * 180.02562 * 20 19 18 36 36 H 1.08991 * 109.47090 * 300.00488 * 20 19 18 37 37 H 1.09005 * 109.46797 * 60.00157 * 21 19 18 38 38 H 1.08999 * 109.47238 * 179.97438 * 21 19 18 39 39 H 1.09003 * 109.47154 * 300.00283 * 21 19 18 40 40 H 1.08999 * 109.46649 * 60.00723 * 22 19 18 41 41 H 1.09009 * 109.46934 * 179.97438 * 22 19 18 42 42 H 1.08993 * 109.47504 * 299.99836 * 22 19 18 43 43 H 1.09003 * 113.61024 * 220.01738 * 23 17 16 44 44 H 1.08999 * 113.61667 * 89.11763 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3853 2.4723 0.0006 6 16 2.5615 3.8481 0.0012 7 6 1.4413 5.2082 0.0010 8 1 0.3761 5.0304 0.0002 9 6 1.9281 6.5081 0.0009 10 7 1.0913 7.5242 0.0012 11 14 3.7706 6.8156 0.0001 12 1 4.2583 6.8970 -1.4001 13 1 4.0596 8.0929 0.7000 14 1 4.4587 5.7010 0.6998 15 6 2.1975 -1.2687 -0.0006 16 6 1.5375 -2.3608 -0.8586 17 6 1.9131 -3.3526 0.2550 18 8 0.8974 -4.3206 0.5258 19 6 1.2575 -5.6565 0.1684 20 6 2.5022 -6.0765 0.9527 21 6 0.1021 -6.6026 0.5013 22 6 1.5539 -5.7208 -1.3313 23 6 1.8954 -2.1549 1.2194 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 0.7584 2.5303 -0.8892 28 1 0.7589 2.5298 0.8908 29 1 1.4314 8.4326 0.0015 30 1 3.2625 -1.1425 -0.1956 31 1 0.4624 -2.2291 -0.9817 32 1 2.0528 -2.5467 -1.8010 33 1 2.9001 -3.7972 0.1289 34 1 2.2909 -6.0306 2.0211 35 1 2.7771 -7.0953 0.6797 36 1 3.3254 -5.4025 0.7160 37 1 -0.7848 -6.3036 -0.0573 38 1 0.3766 -7.6215 0.2282 39 1 -0.1088 -6.5567 1.5698 40 1 2.3772 -5.0469 -1.5681 41 1 1.8290 -6.7397 -1.6039 42 1 0.6672 -5.4217 -1.8901 43 1 2.6999 -2.1747 1.9547 44 1 0.9184 -1.9670 1.6644 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421695634.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:31 Heat of formation + Delta-G solvation = -64.640512 kcal Electronic energy + Delta-G solvation = -22493.182161 eV Core-core repulsion = 19151.752467 eV Total energy + Delta-G solvation = -3341.429694 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.56319 -39.17036 -37.36351 -34.46038 -32.93587 -32.42694 -29.34532 -27.89144 -27.81244 -27.03136 -25.85025 -25.62010 -24.10023 -20.71929 -19.89628 -19.03467 -17.68314 -17.27746 -16.64446 -16.24166 -15.69311 -15.20816 -15.10345 -14.91513 -14.58302 -13.90713 -13.77579 -13.59976 -13.23986 -13.08187 -12.81851 -12.78591 -12.67187 -12.42885 -12.29611 -12.25906 -12.14307 -12.09899 -11.71087 -11.48702 -11.27557 -11.22357 -10.99961 -10.93261 -10.65118 -10.54588 -9.84441 -9.69667 -9.44725 -8.99309 -8.54231 -8.47469 -6.90774 -6.27896 -3.99464 2.70554 2.92436 3.14257 3.33871 3.45615 3.51589 3.64038 4.28268 4.32010 4.34273 4.47300 4.51969 4.58514 4.66409 4.69017 4.71968 5.00333 5.07059 5.11160 5.12854 5.17853 5.26003 5.32154 5.41031 5.41848 5.43872 5.45339 5.54282 5.55709 5.65810 5.69792 5.76121 5.80575 5.82741 5.86826 5.89955 6.03196 6.06324 6.61358 7.05858 7.47939 7.95190 8.42637 8.44864 9.18337 10.81307 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.045681 B = 0.002555 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.794470 B =10958.014977 C =11246.253921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.609 5.609 3 C 0.533 3.467 4 O -0.520 6.520 5 C -0.121 4.121 6 S -0.144 6.144 7 C -0.520 4.520 8 H 0.088 0.912 9 C 0.095 3.905 10 N -0.881 5.881 11 Si 0.857 3.143 12 H -0.267 1.267 13 H -0.274 1.274 14 H -0.235 1.235 15 C 0.126 3.874 16 C -0.164 4.164 17 C 0.065 3.935 18 O -0.360 6.360 19 C 0.104 3.896 20 C -0.179 4.179 21 C -0.138 4.138 22 C -0.176 4.176 23 C -0.149 4.149 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.271 0.729 30 H 0.121 0.879 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.715 -28.864 -0.081 28.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.343 5.343 3 C 0.321 3.679 4 O -0.395 6.395 5 C -0.271 4.271 6 S 0.082 5.918 7 C -0.668 4.668 8 H 0.106 0.894 9 C -0.114 4.114 10 N -0.517 5.517 11 Si 0.682 3.318 12 H -0.192 1.192 13 H -0.200 1.200 14 H -0.159 1.159 15 C 0.022 3.978 16 C -0.203 4.203 17 C 0.007 3.993 18 O -0.279 6.279 19 C 0.065 3.935 20 C -0.237 4.237 21 C -0.195 4.195 22 C -0.234 4.234 23 C -0.188 4.188 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.080 0.920 30 H 0.139 0.861 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.138 -28.603 0.000 28.603 hybrid contribution -0.646 0.353 -0.184 0.759 sum -0.784 -28.249 -0.185 28.261 Atomic orbital electron populations 1.21789 0.79525 1.03394 1.01976 1.47709 1.06758 1.05052 1.74829 1.20343 0.87931 0.84663 0.74991 1.90676 1.13753 1.86874 1.48155 1.23320 1.03048 0.95103 1.05628 1.84778 1.12047 0.97573 1.97413 1.22308 0.94872 0.90880 1.58697 0.89393 1.24719 0.98550 0.94881 0.93209 1.69941 1.34783 0.98865 1.48129 0.86727 0.85370 0.79795 0.79913 1.19231 1.19967 1.15918 1.22190 0.98064 0.81593 0.95962 1.23987 1.02647 0.95362 0.98275 1.23397 0.92172 0.87517 0.96241 1.88031 1.40344 1.15450 1.84064 1.21520 0.94986 0.83397 0.93595 1.22470 0.97946 1.01954 1.01283 1.21756 0.97462 0.97697 1.02569 1.22467 1.02507 1.02412 0.95965 1.23715 1.03461 0.93897 0.97682 0.92531 0.90940 0.90434 0.88524 0.88453 0.91958 0.86147 0.88605 0.90855 0.88987 0.91640 0.91561 0.92084 0.91809 0.91265 0.91824 0.92152 0.91743 0.91687 0.90533 0.88757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 8.84 59.85 0.53 1.34 16 2 N -0.61 -8.45 3.08 -173.00 -0.53 -8.98 16 3 C 0.53 9.82 7.69 -10.98 -0.08 9.74 16 4 O -0.52 -11.38 15.34 5.56 0.09 -11.29 16 5 C -0.12 -2.39 4.71 36.01 0.17 -2.22 16 6 S -0.14 -3.71 18.55 -107.50 -1.99 -5.70 16 7 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 8 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 9 C 0.09 2.79 5.50 -17.43 -0.10 2.70 16 10 N -0.88 -26.67 13.97 55.49 0.78 -25.90 16 11 Si 0.86 21.93 27.74 -169.99 -4.72 17.21 16 12 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 13 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 15 C 0.13 1.51 4.21 -67.12 -0.28 1.23 16 16 C -0.16 -1.56 7.34 -25.92 -0.19 -1.75 16 17 C 0.07 0.58 2.82 -25.92 -0.07 0.51 16 18 O -0.36 -3.43 10.00 -35.23 -0.35 -3.78 16 19 C 0.10 0.76 1.11 -90.62 -0.10 0.66 16 20 C -0.18 -1.15 8.38 37.16 0.31 -0.84 16 21 C -0.14 -0.86 8.84 37.16 0.33 -0.53 16 22 C -0.18 -1.15 8.39 37.16 0.31 -0.84 16 23 C -0.15 -1.53 7.45 -25.92 -0.19 -1.72 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.65 6.34 -51.93 -0.33 0.32 16 26 H 0.08 0.83 6.44 -51.93 -0.33 0.50 16 27 H 0.10 1.79 8.11 -51.92 -0.42 1.37 16 28 H 0.10 1.80 7.40 -51.92 -0.38 1.41 16 29 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.12 1.61 7.23 -51.93 -0.38 1.24 16 31 H 0.10 0.91 6.72 -51.92 -0.35 0.57 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.73 5.55 -51.93 -0.29 0.45 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.39 6.25 -51.93 -0.32 0.07 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.40 7.02 -51.93 -0.36 0.04 16 41 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.09 0.99 6.92 -51.93 -0.36 0.63 16 LS Contribution 360.68 15.07 5.44 5.44 Total: -1.00 -33.56 360.68 -7.69 -41.25 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -7.33 Total: -1.77 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 0.94 Total: -6.47 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.24 Total: -34.88 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.27 Total: -15.07 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.72 Total: 17.21 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -1.99 Total: -5.70 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.56 -7.69 -41.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421695634.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.389 kcal (2) G-P(sol) polarization free energy of solvation -33.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds