Wall clock time and date at job start Tue Mar 31 2020 07:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34777 * 119.99858 * 2 1 4 4 O 1.21279 * 120.00166 * 180.02562 * 3 2 1 5 5 C 1.50706 * 119.99762 * 0.02562 * 3 2 1 6 6 S 1.81003 * 109.46853 * 179.97438 * 5 3 2 7 7 C 1.76196 * 99.99846 * 179.97438 * 6 5 3 8 8 H 1.07998 * 120.00030 * 359.97438 * 7 6 5 9 9 C 1.38802 * 119.99637 * 180.02562 * 7 6 5 10 10 N 1.31633 * 119.99688 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00457 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47357 * 89.99660 * 11 9 7 13 13 H 1.48495 * 109.47496 * 209.99879 * 11 9 7 14 14 H 1.48500 * 109.46916 * 330.00121 * 11 9 7 15 15 C 1.46496 * 119.99884 * 180.02562 * 2 1 3 16 16 C 1.53773 * 113.62044 * 37.49434 * 15 2 1 17 17 C 1.53780 * 87.08355 * 220.01876 * 16 15 2 18 18 O 1.42897 * 113.61170 * 139.97846 * 17 16 15 19 19 C 1.42903 * 113.99851 * 112.50538 * 18 17 16 20 20 C 1.53001 * 109.47373 * 59.99560 * 19 18 17 21 21 C 1.53002 * 109.47286 * 179.97438 * 19 18 17 22 22 C 1.53004 * 109.46908 * 299.99316 * 19 18 17 23 23 C 1.53778 * 87.07990 * 25.43274 * 17 16 15 24 24 H 1.08999 * 109.47441 * 89.99653 * 1 2 3 25 25 H 1.09005 * 109.47121 * 209.99861 * 1 2 3 26 26 H 1.08997 * 109.47160 * 329.99513 * 1 2 3 27 27 H 1.09000 * 109.47318 * 299.99141 * 5 3 2 28 28 H 1.09000 * 109.47161 * 59.99772 * 5 3 2 29 29 H 0.97002 * 120.00245 * 179.97438 * 10 9 7 30 30 H 1.09003 * 112.84932 * 168.80095 * 15 2 1 31 31 H 1.09010 * 113.61067 * 334.56814 * 16 15 2 32 32 H 1.09006 * 113.61718 * 105.46765 * 16 15 2 33 33 H 1.08993 * 113.61155 * 270.88001 * 17 16 15 34 34 H 1.09003 * 109.46701 * 59.99941 * 20 19 18 35 35 H 1.08999 * 109.47291 * 180.02562 * 20 19 18 36 36 H 1.08991 * 109.47090 * 300.00488 * 20 19 18 37 37 H 1.09005 * 109.46797 * 60.00157 * 21 19 18 38 38 H 1.08999 * 109.47238 * 179.97438 * 21 19 18 39 39 H 1.09003 * 109.47154 * 300.00283 * 21 19 18 40 40 H 1.08999 * 109.46649 * 60.00723 * 22 19 18 41 41 H 1.09009 * 109.46934 * 179.97438 * 22 19 18 42 42 H 1.08993 * 109.47504 * 299.99836 * 22 19 18 43 43 H 1.09003 * 113.61024 * 220.01738 * 23 17 16 44 44 H 1.08999 * 113.61667 * 89.11763 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3853 2.4723 0.0006 6 16 2.5615 3.8481 0.0012 7 6 1.4413 5.2082 0.0010 8 1 0.3761 5.0304 0.0002 9 6 1.9281 6.5081 0.0009 10 7 1.0913 7.5242 0.0012 11 14 3.7706 6.8156 0.0001 12 1 4.2583 6.8970 -1.4001 13 1 4.0596 8.0929 0.7000 14 1 4.4587 5.7010 0.6998 15 6 2.1975 -1.2687 -0.0006 16 6 1.5375 -2.3608 -0.8586 17 6 1.9131 -3.3526 0.2550 18 8 0.8974 -4.3206 0.5258 19 6 1.2575 -5.6565 0.1684 20 6 2.5022 -6.0765 0.9527 21 6 0.1021 -6.6026 0.5013 22 6 1.5539 -5.7208 -1.3313 23 6 1.8954 -2.1549 1.2194 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 0.7584 2.5303 -0.8892 28 1 0.7589 2.5298 0.8908 29 1 1.4314 8.4326 0.0015 30 1 3.2625 -1.1425 -0.1956 31 1 0.4624 -2.2291 -0.9817 32 1 2.0528 -2.5467 -1.8010 33 1 2.9001 -3.7972 0.1289 34 1 2.2909 -6.0306 2.0211 35 1 2.7771 -7.0953 0.6797 36 1 3.3254 -5.4025 0.7160 37 1 -0.7848 -6.3036 -0.0573 38 1 0.3766 -7.6215 0.2282 39 1 -0.1088 -6.5567 1.5698 40 1 2.3772 -5.0469 -1.5681 41 1 1.8290 -6.7397 -1.6039 42 1 0.6672 -5.4217 -1.8901 43 1 2.6999 -2.1747 1.9547 44 1 0.9184 -1.9670 1.6644 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421695634.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:30 Heat of formation + Delta-G solvation = -85.675511 kcal Electronic energy + Delta-G solvation = -22494.094307 eV Core-core repulsion = 19151.752467 eV Total energy + Delta-G solvation = -3342.341840 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.53709 -40.19523 -38.31117 -35.54744 -34.67406 -33.63765 -30.84064 -28.41823 -28.31425 -27.99025 -27.86660 -26.64080 -25.06721 -21.63974 -20.70366 -20.14448 -19.59491 -18.39518 -17.59041 -17.26659 -17.06899 -16.90095 -16.15483 -15.95398 -15.76530 -15.14258 -14.90225 -14.63376 -14.59450 -14.18119 -14.00222 -13.75445 -13.40667 -13.36415 -13.24033 -13.19457 -13.02552 -12.94977 -12.83126 -12.68383 -12.62133 -12.47731 -12.17533 -12.02172 -11.84666 -11.65848 -11.25368 -11.17421 -10.92666 -10.53446 -10.37143 -9.67234 -9.00979 -8.51827 -6.22928 0.97046 1.31046 1.45603 1.48850 1.53698 2.03466 2.24866 2.67232 2.81041 2.86236 3.43902 3.55209 3.64750 3.83347 3.88234 3.95690 4.02057 4.13317 4.14965 4.25369 4.32160 4.42580 4.62874 4.66728 4.67289 4.72072 4.74896 4.82115 4.83778 4.91149 4.95330 4.95657 5.00850 5.03923 5.14949 5.23754 5.38094 5.41035 5.56005 5.70570 6.11037 6.24022 6.42514 6.93218 7.06354 8.60505 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.045681 B = 0.002555 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.794470 B =10958.014977 C =11246.253921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.596 5.596 3 C 0.532 3.468 4 O -0.563 6.563 5 C -0.106 4.106 6 S -0.177 6.177 7 C -0.528 4.528 8 H 0.062 0.938 9 C 0.045 3.955 10 N -0.916 5.916 11 Si 0.915 3.085 12 H -0.262 1.262 13 H -0.259 1.259 14 H -0.237 1.237 15 C 0.113 3.887 16 C -0.152 4.152 17 C 0.076 3.924 18 O -0.374 6.374 19 C 0.096 3.904 20 C -0.178 4.178 21 C -0.137 4.137 22 C -0.174 4.174 23 C -0.145 4.145 24 H 0.072 0.928 25 H 0.095 0.905 26 H 0.077 0.923 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.277 0.723 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.681 -31.117 -0.297 31.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.328 5.328 3 C 0.320 3.680 4 O -0.441 6.441 5 C -0.256 4.256 6 S 0.049 5.951 7 C -0.675 4.675 8 H 0.081 0.919 9 C -0.160 4.160 10 N -0.554 5.554 11 Si 0.737 3.263 12 H -0.187 1.187 13 H -0.183 1.183 14 H -0.161 1.161 15 C 0.009 3.991 16 C -0.191 4.191 17 C 0.017 3.983 18 O -0.294 6.294 19 C 0.058 3.942 20 C -0.235 4.235 21 C -0.194 4.194 22 C -0.232 4.232 23 C -0.183 4.183 24 H 0.091 0.909 25 H 0.113 0.887 26 H 0.096 0.904 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.086 0.914 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.099 0.901 33 H 0.121 0.879 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.150 -30.896 -0.215 30.897 hybrid contribution -0.800 0.883 -0.114 1.197 sum -0.950 -30.013 -0.329 30.030 Atomic orbital electron populations 1.22060 0.77298 1.04592 1.03417 1.47721 1.08125 1.04319 1.72640 1.20068 0.87310 0.85334 0.75291 1.90660 1.15298 1.87443 1.50745 1.23293 1.01751 0.93550 1.07047 1.84701 1.13864 0.98953 1.97565 1.22438 0.94365 0.92450 1.58259 0.91928 1.25569 1.02795 0.94767 0.92909 1.70016 1.36762 0.99520 1.49118 0.85859 0.80178 0.80071 0.80217 1.18683 1.18280 1.16132 1.22370 0.97370 0.81090 0.98223 1.23924 1.02701 0.93962 0.98466 1.23266 0.92684 0.87245 0.95061 1.88009 1.40654 1.16462 1.84253 1.21737 0.95738 0.82514 0.94250 1.22463 0.97456 1.02828 1.00796 1.21779 0.96994 0.98420 1.02210 1.22451 1.02181 1.03283 0.95243 1.23676 1.03416 0.94029 0.97224 0.90924 0.88675 0.90406 0.87110 0.87008 0.91352 0.87864 0.88104 0.90114 0.87946 0.92219 0.90082 0.92230 0.92203 0.89518 0.92305 0.92388 0.90325 0.92159 0.90625 0.88650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.29 8.84 127.77 1.13 2.42 16 2 N -0.60 -15.63 3.08 -819.65 -2.53 -18.15 16 3 C 0.53 19.27 7.69 87.66 0.67 19.94 16 4 O -0.56 -24.71 15.34 -3.03 -0.05 -24.76 16 5 C -0.11 -4.11 4.71 71.24 0.34 -3.78 16 6 S -0.18 -9.12 18.55 -56.49 -1.05 -10.17 16 7 C -0.53 -30.97 10.04 67.96 0.68 -30.28 16 8 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 9 C 0.04 2.66 5.50 84.86 0.47 3.13 16 10 N -0.92 -56.03 13.97 21.65 0.30 -55.73 16 11 Si 0.91 45.36 27.74 68.60 1.90 47.27 16 12 H -0.26 -12.67 7.11 99.48 0.71 -11.97 16 13 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 14 H -0.24 -11.78 6.74 99.48 0.67 -11.11 16 15 C 0.11 2.55 4.21 45.52 0.19 2.74 16 16 C -0.15 -2.57 7.34 31.12 0.23 -2.34 16 17 C 0.08 1.21 2.82 31.12 0.09 1.30 16 18 O -0.37 -6.34 10.00 -148.98 -1.49 -7.83 16 19 C 0.10 1.20 1.11 -10.79 -0.01 1.19 16 20 C -0.18 -1.92 8.38 71.98 0.60 -1.31 16 21 C -0.14 -1.43 8.84 71.98 0.64 -0.79 16 22 C -0.17 -1.86 8.39 71.98 0.60 -1.26 16 23 C -0.14 -2.74 7.45 31.12 0.23 -2.50 16 24 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.09 1.41 6.34 -2.38 -0.02 1.39 16 26 H 0.08 1.50 6.44 -2.39 -0.02 1.48 16 27 H 0.11 3.99 8.11 -2.39 -0.02 3.97 16 28 H 0.11 4.02 7.40 -2.40 -0.02 4.00 16 29 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 30 H 0.10 2.73 7.23 -2.39 -0.02 2.72 16 31 H 0.10 1.63 6.72 -2.38 -0.02 1.62 16 32 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.10 1.43 5.55 -2.39 -0.01 1.42 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.06 0.65 6.25 -2.39 -0.01 0.64 16 37 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 38 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.06 0.64 7.02 -2.39 -0.02 0.63 16 41 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 42 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.10 1.79 6.92 -2.39 -0.02 1.78 16 Total: -1.00 -72.53 360.68 3.89 -68.64 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.93 Total: 12.29 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 5.86 Total: -11.56 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -2.22 Total: -73.88 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -1.54 Total: -32.59 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.90 Total: 47.27 kcal Atomic # 16 Polarization: -9.12 SS G_CDS: -1.05 Total: -10.17 kcal Total: -72.53 3.89 -68.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421695634.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.032 kcal (2) G-P(sol) polarization free energy of solvation -72.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds