Wall clock time and date at job start Tue Mar 31 2020 07:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46939 * 2 1 4 4 C 1.53000 * 109.46854 * 240.00085 * 2 1 3 5 5 O 1.45193 * 109.47007 * 119.99869 * 2 1 3 6 6 C 1.34640 * 117.00060 * 60.00493 * 5 2 1 7 7 O 1.21508 * 120.00060 * 359.97438 * 6 5 2 8 8 N 1.34783 * 120.00141 * 179.97438 * 6 5 2 9 9 C 1.46919 * 120.63144 * 179.97438 * 8 6 5 10 10 C 1.53195 * 108.89273 * 233.55709 * 9 8 6 11 11 C 1.53070 * 109.29524 * 305.57804 * 10 9 8 12 12 S 1.81400 * 109.44311 * 181.23730 * 11 10 9 13 13 C 1.81402 * 102.99997 * 64.79533 * 12 11 10 14 14 C 1.50700 * 109.46897 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99908 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99878 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00018 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00058 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47237 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46856 * 120.00533 * 18 16 14 21 21 H 1.48501 * 109.47364 * 240.00621 * 18 16 14 22 22 C 1.53039 * 109.65812 * 61.15209 * 11 10 9 23 23 C 1.46928 * 120.62874 * 0.02562 * 8 6 5 24 24 H 1.09001 * 109.46902 * 299.99937 * 1 2 3 25 25 H 1.08998 * 109.47842 * 60.00145 * 1 2 3 26 26 H 1.08998 * 109.47045 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46801 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47026 * 300.00268 * 3 2 1 29 29 H 1.08996 * 109.47101 * 59.99831 * 3 2 1 30 30 H 1.08998 * 109.47007 * 299.99671 * 4 2 1 31 31 H 1.08998 * 109.47019 * 60.00091 * 4 2 1 32 32 H 1.08996 * 109.46799 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.58751 * 353.41659 * 9 8 6 34 34 H 1.08996 * 109.58750 * 113.69843 * 9 8 6 35 35 H 1.08997 * 109.50046 * 65.38734 * 10 9 8 36 36 H 1.09003 * 109.49733 * 185.48713 * 10 9 8 37 37 H 1.09007 * 109.35101 * 301.12962 * 11 10 9 38 38 H 1.08996 * 109.47120 * 300.00310 * 13 12 11 39 39 H 1.08999 * 109.46850 * 60.00224 * 13 12 11 40 40 H 0.96993 * 120.00077 * 179.97438 * 17 16 14 41 41 H 1.09002 * 109.49876 * 178.74890 * 22 11 10 42 42 H 1.09005 * 109.52615 * 58.67140 * 22 11 10 43 43 H 1.08998 * 109.58787 * 246.16207 * 23 8 6 44 44 H 1.09007 * 109.58600 * 6.44520 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9510 -2.5095 0.5040 8 7 2.0681 -2.6657 2.4167 9 6 1.6812 -4.0715 2.5975 10 6 1.0420 -4.2362 3.9799 11 6 2.0007 -3.7027 5.0473 12 16 1.2631 -3.9292 6.6890 13 6 1.1717 -5.7338 6.8499 14 6 0.5706 -6.0892 8.1853 15 1 0.2729 -5.3077 8.8686 16 6 0.3997 -7.4121 8.5342 17 7 0.7618 -8.3638 7.7018 18 14 -0.3448 -7.8528 10.1898 19 1 -0.6645 -6.6090 10.9356 20 1 -1.5882 -8.6373 9.9803 21 1 0.6259 -8.6622 10.9694 22 6 2.2622 -2.2141 4.8068 23 6 2.9159 -2.0298 3.4343 24 1 -0.3633 0.5138 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6766 -1.7489 -1.2492 31 1 1.6766 -0.2074 -2.1392 32 1 3.1299 -0.7208 -1.2495 33 1 0.9641 -4.3552 1.8272 34 1 2.5647 -4.7058 2.5255 35 1 0.1087 -3.6744 4.0185 36 1 0.8399 -5.2914 4.1639 37 1 2.9419 -4.2500 4.9934 38 1 0.5497 -6.1387 6.0516 39 1 2.1741 -6.1560 6.7791 40 1 0.6419 -9.2944 7.9474 41 1 2.9275 -1.8319 5.5810 42 1 1.3187 -1.6691 4.8362 43 1 3.9008 -2.4969 3.4332 44 1 3.0155 -0.9667 3.2146 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496881929.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:27 Heat of formation + Delta-G solvation = -100.545432 kcal Electronic energy + Delta-G solvation = -22890.710905 eV Core-core repulsion = 19547.724257 eV Total energy + Delta-G solvation = -3342.986648 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.150 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.95552 -38.61274 -36.56895 -34.33086 -33.16960 -32.63250 -31.14830 -28.51896 -27.64118 -27.57593 -25.70440 -23.61014 -22.98690 -22.10916 -20.45935 -19.26181 -18.04245 -16.79404 -16.53356 -16.26945 -15.61251 -15.30253 -14.74674 -14.66811 -14.60805 -13.98823 -13.89935 -13.67071 -13.50111 -13.11159 -12.79359 -12.57789 -12.41371 -12.32996 -12.13495 -12.10838 -11.97505 -11.73351 -11.55683 -11.45912 -11.24376 -10.94611 -10.77282 -10.66633 -10.55534 -10.52242 -10.06928 -9.85698 -9.53688 -8.90126 -8.66712 -8.62015 -6.71911 -6.20700 -4.24517 2.05529 2.57039 2.81780 3.24173 3.31579 3.37792 3.70783 3.84553 4.34744 4.49808 4.54153 4.68369 4.76130 4.84811 5.05475 5.14521 5.17008 5.22534 5.29511 5.30763 5.37887 5.45317 5.49324 5.52738 5.59105 5.64499 5.72505 5.74386 5.78393 5.90246 5.98395 6.08365 6.13638 6.20112 6.36288 6.42427 6.49029 7.08862 7.10440 7.31583 7.74357 8.00698 8.27819 8.77625 9.38690 10.90599 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.037365 B = 0.002737 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.175042 B =10225.969964 C =10460.143914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.363 6.363 6 C 0.654 3.346 7 O -0.572 6.572 8 N -0.592 5.592 9 C 0.129 3.871 10 C -0.128 4.128 11 C -0.057 4.057 12 S -0.307 6.307 13 C 0.093 3.907 14 C -0.511 4.511 15 H 0.067 0.933 16 C 0.065 3.935 17 N -0.893 5.893 18 Si 0.905 3.095 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.281 1.281 22 C -0.111 4.111 23 C 0.116 3.884 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.037 0.963 39 H 0.034 0.966 40 H 0.265 0.735 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.609 16.413 -16.048 23.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.098 3.902 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.278 6.278 6 C 0.409 3.591 7 O -0.462 6.462 8 N -0.332 5.332 9 C 0.007 3.993 10 C -0.168 4.168 11 C -0.186 4.186 12 S -0.077 6.077 13 C -0.054 4.054 14 C -0.551 4.551 15 H 0.085 0.915 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.732 3.268 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.150 4.150 23 C -0.008 4.008 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.107 0.893 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.081 16.900 -15.606 23.363 hybrid contribution 0.010 -1.362 0.024 1.363 sum 4.091 15.538 -15.582 22.382 Atomic orbital electron populations 1.22514 0.94004 1.05169 1.02383 1.22044 0.94406 0.91474 0.82236 1.21854 1.02164 0.92630 1.03082 1.22508 1.01440 1.03582 0.96449 1.86287 1.71570 1.23755 1.46210 1.17951 0.78677 0.80424 0.82090 1.90875 1.41485 1.70431 1.43367 1.47036 1.52753 1.12406 1.21005 1.21736 1.00609 0.78507 0.98490 1.22286 0.98932 1.03135 0.92410 1.22957 1.00747 0.98570 0.96325 1.86648 1.82676 1.18718 1.19672 1.21042 1.00120 0.83226 1.00988 1.20729 1.41696 0.92161 1.00480 0.91495 1.24964 0.95318 0.95860 0.97759 1.69958 1.47124 1.00080 1.35951 0.86312 0.78808 0.78605 0.83039 1.19442 1.20736 1.20740 1.21720 1.02225 0.94953 0.96098 1.21762 0.93218 0.98796 0.86999 0.92144 0.91288 0.89310 0.91533 0.90253 0.91440 0.89342 0.91282 0.92280 0.88485 0.91002 0.90533 0.89498 0.90138 0.94525 0.94778 0.92565 0.89743 0.90792 0.91077 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.83 8.37 37.16 0.31 -1.52 16 2 C 0.14 1.34 1.13 -90.62 -0.10 1.24 16 3 C -0.14 -0.99 8.85 37.16 0.33 -0.66 16 4 C -0.18 -1.74 8.37 37.16 0.31 -1.43 16 5 O -0.36 -4.41 8.52 -40.32 -0.34 -4.75 16 6 C 0.65 9.04 7.74 54.06 0.42 9.46 16 7 O -0.57 -8.92 11.29 -19.28 -0.22 -9.14 16 8 N -0.59 -7.66 2.98 -178.59 -0.53 -8.19 16 9 C 0.13 1.71 6.43 -3.71 -0.02 1.68 16 10 C -0.13 -1.94 5.29 -26.59 -0.14 -2.08 16 11 C -0.06 -0.90 2.61 -26.67 -0.07 -0.97 16 12 S -0.31 -6.46 21.07 -107.50 -2.27 -8.73 16 13 C 0.09 2.36 5.39 36.01 0.19 2.55 16 14 C -0.51 -14.31 9.13 -34.44 -0.31 -14.62 16 15 H 0.07 1.89 7.71 -52.49 -0.40 1.48 16 16 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 17 N -0.89 -25.74 13.29 55.43 0.74 -25.01 16 18 Si 0.91 21.31 29.54 -169.99 -5.02 16.29 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C -0.11 -1.43 5.37 -26.64 -0.14 -1.57 16 23 C 0.12 1.29 6.44 -3.74 -0.02 1.27 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.09 1.12 5.88 -51.93 -0.31 0.81 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 1.06 5.88 -51.93 -0.31 0.76 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 1.33 7.00 -51.93 -0.36 0.97 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.09 1.45 6.86 -51.93 -0.36 1.09 16 37 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 38 H 0.04 0.96 7.10 -51.93 -0.37 0.59 16 39 H 0.03 0.90 8.14 -51.92 -0.42 0.48 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.09 0.93 6.93 -51.92 -0.36 0.57 16 LS Contribution 358.25 15.07 5.40 5.40 Total: -1.00 -30.38 358.25 -9.11 -39.49 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -7.52 Total: -0.40 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 0.65 Total: -4.95 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.21 Total: -33.20 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.56 Total: -13.90 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -6.46 SS G_CDS: -2.27 Total: -8.73 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.38 -9.11 -39.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496881929.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.053 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds