Wall clock time and date at job start Tue Mar 31 2020 07:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46939 * 2 1 4 4 C 1.53000 * 109.46854 * 240.00085 * 2 1 3 5 5 O 1.45193 * 109.47007 * 119.99869 * 2 1 3 6 6 C 1.34640 * 117.00060 * 60.00493 * 5 2 1 7 7 O 1.21508 * 120.00060 * 359.97438 * 6 5 2 8 8 N 1.34783 * 120.00141 * 179.97438 * 6 5 2 9 9 C 1.46919 * 120.63144 * 179.97438 * 8 6 5 10 10 C 1.53195 * 108.89273 * 233.55709 * 9 8 6 11 11 C 1.53070 * 109.29524 * 305.57804 * 10 9 8 12 12 S 1.81400 * 109.44311 * 181.23730 * 11 10 9 13 13 C 1.81402 * 102.99997 * 64.79533 * 12 11 10 14 14 C 1.50700 * 109.46897 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99908 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99878 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00018 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00058 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47237 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46856 * 120.00533 * 18 16 14 21 21 H 1.48501 * 109.47364 * 240.00621 * 18 16 14 22 22 C 1.53039 * 109.65812 * 61.15209 * 11 10 9 23 23 C 1.46928 * 120.62874 * 0.02562 * 8 6 5 24 24 H 1.09001 * 109.46902 * 299.99937 * 1 2 3 25 25 H 1.08998 * 109.47842 * 60.00145 * 1 2 3 26 26 H 1.08998 * 109.47045 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46801 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47026 * 300.00268 * 3 2 1 29 29 H 1.08996 * 109.47101 * 59.99831 * 3 2 1 30 30 H 1.08998 * 109.47007 * 299.99671 * 4 2 1 31 31 H 1.08998 * 109.47019 * 60.00091 * 4 2 1 32 32 H 1.08996 * 109.46799 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.58751 * 353.41659 * 9 8 6 34 34 H 1.08996 * 109.58750 * 113.69843 * 9 8 6 35 35 H 1.08997 * 109.50046 * 65.38734 * 10 9 8 36 36 H 1.09003 * 109.49733 * 185.48713 * 10 9 8 37 37 H 1.09007 * 109.35101 * 301.12962 * 11 10 9 38 38 H 1.08996 * 109.47120 * 300.00310 * 13 12 11 39 39 H 1.08999 * 109.46850 * 60.00224 * 13 12 11 40 40 H 0.96993 * 120.00077 * 179.97438 * 17 16 14 41 41 H 1.09002 * 109.49876 * 178.74890 * 22 11 10 42 42 H 1.09005 * 109.52615 * 58.67140 * 22 11 10 43 43 H 1.08998 * 109.58787 * 246.16207 * 23 8 6 44 44 H 1.09007 * 109.58600 * 6.44520 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9510 -2.5095 0.5040 8 7 2.0681 -2.6657 2.4167 9 6 1.6812 -4.0715 2.5975 10 6 1.0420 -4.2362 3.9799 11 6 2.0007 -3.7027 5.0473 12 16 1.2631 -3.9292 6.6890 13 6 1.1717 -5.7338 6.8499 14 6 0.5706 -6.0892 8.1853 15 1 0.2729 -5.3077 8.8686 16 6 0.3997 -7.4121 8.5342 17 7 0.7618 -8.3638 7.7018 18 14 -0.3448 -7.8528 10.1898 19 1 -0.6645 -6.6090 10.9356 20 1 -1.5882 -8.6373 9.9803 21 1 0.6259 -8.6622 10.9694 22 6 2.2622 -2.2141 4.8068 23 6 2.9159 -2.0298 3.4343 24 1 -0.3633 0.5138 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6766 -1.7489 -1.2492 31 1 1.6766 -0.2074 -2.1392 32 1 3.1299 -0.7208 -1.2495 33 1 0.9641 -4.3552 1.8272 34 1 2.5647 -4.7058 2.5255 35 1 0.1087 -3.6744 4.0185 36 1 0.8399 -5.2914 4.1639 37 1 2.9419 -4.2500 4.9934 38 1 0.5497 -6.1387 6.0516 39 1 2.1741 -6.1560 6.7791 40 1 0.6419 -9.2944 7.9474 41 1 2.9275 -1.8319 5.5810 42 1 1.3187 -1.6691 4.8362 43 1 3.9008 -2.4969 3.4332 44 1 3.0155 -0.9667 3.2146 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496881929.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:26 Heat of formation + Delta-G solvation = -116.757830 kcal Electronic energy + Delta-G solvation = -22891.413928 eV Core-core repulsion = 19547.724257 eV Total energy + Delta-G solvation = -3343.689671 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.94267 -39.63207 -37.60968 -35.30807 -35.20842 -33.73231 -32.26257 -30.61477 -28.33603 -28.25775 -26.84502 -25.27035 -24.44568 -23.19265 -21.51456 -20.24593 -19.12201 -18.58268 -17.70632 -17.27050 -17.23692 -16.54594 -16.28380 -15.61402 -15.53408 -15.24888 -14.99642 -14.95219 -14.61766 -14.42184 -14.29342 -14.16667 -13.55433 -13.31782 -13.21519 -13.07381 -12.86788 -12.83289 -12.78094 -12.54238 -12.45257 -12.36907 -12.23464 -12.01817 -11.86586 -11.72509 -11.38779 -11.36393 -11.02357 -10.75223 -10.61148 -9.80219 -8.47067 -8.33664 -6.46208 1.00590 1.10461 1.38842 1.39654 1.53949 1.74663 2.03982 2.36224 2.80258 3.00966 3.61974 3.65356 3.78774 3.83211 3.96314 3.98327 4.03312 4.23243 4.33353 4.47792 4.56387 4.61617 4.64347 4.68617 4.71075 4.74748 4.79663 4.86326 4.91431 4.93842 4.96282 4.97939 5.06249 5.15072 5.20551 5.31241 5.34371 5.42703 5.49569 5.57161 5.90231 6.29114 6.61314 7.21733 7.25170 8.78276 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.037365 B = 0.002737 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.175042 B =10225.969964 C =10460.143914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.123 3.877 3 C -0.134 4.134 4 C -0.178 4.178 5 O -0.363 6.363 6 C 0.650 3.350 7 O -0.594 6.594 8 N -0.594 5.594 9 C 0.139 3.861 10 C -0.120 4.120 11 C -0.044 4.044 12 S -0.320 6.320 13 C 0.098 3.902 14 C -0.536 4.536 15 H 0.059 0.941 16 C 0.015 3.985 17 N -0.924 5.924 18 Si 0.974 3.026 19 H -0.266 1.266 20 H -0.273 1.273 21 H -0.272 1.272 22 C -0.102 4.102 23 C 0.123 3.877 24 H 0.058 0.942 25 H 0.091 0.909 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.101 0.899 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.017 0.983 39 H 0.013 0.987 40 H 0.270 0.730 41 H 0.098 0.902 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.439 18.274 -16.463 25.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.087 3.913 3 C -0.191 4.191 4 C -0.235 4.235 5 O -0.278 6.278 6 C 0.406 3.594 7 O -0.486 6.486 8 N -0.335 5.335 9 C 0.016 3.984 10 C -0.160 4.160 11 C -0.173 4.173 12 S -0.090 6.090 13 C -0.049 4.049 14 C -0.575 4.575 15 H 0.078 0.922 16 C -0.186 4.186 17 N -0.563 5.563 18 Si 0.797 3.203 19 H -0.190 1.190 20 H -0.199 1.199 21 H -0.197 1.197 22 C -0.142 4.142 23 C -0.001 4.001 24 H 0.078 0.922 25 H 0.110 0.890 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.120 0.880 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.035 0.965 39 H 0.031 0.969 40 H 0.079 0.921 41 H 0.117 0.883 42 H 0.084 0.916 43 H 0.110 0.890 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.920 18.781 -16.017 25.169 hybrid contribution -0.240 -1.863 0.043 1.879 sum 4.679 16.918 -15.973 23.733 Atomic orbital electron populations 1.22477 0.94361 1.03472 1.03469 1.22428 0.94358 0.92871 0.81610 1.21875 1.02546 0.90425 1.04279 1.22458 1.01691 1.02094 0.97302 1.86295 1.71472 1.22679 1.47338 1.18093 0.78378 0.80952 0.81992 1.90876 1.42395 1.71050 1.44245 1.47103 1.52839 1.12179 1.21330 1.21580 1.00999 0.79377 0.96491 1.22143 0.98584 1.01581 0.93718 1.23111 1.00405 1.01118 0.92656 1.86460 1.83640 1.14580 1.24297 1.20690 0.98123 0.86619 0.99515 1.21041 1.42372 0.92562 1.01477 0.92240 1.25883 0.95453 0.95687 1.01579 1.70055 1.47819 1.00571 1.37846 0.85261 0.78222 0.78412 0.78357 1.19035 1.19884 1.19715 1.21694 1.02443 0.92103 0.97936 1.21865 0.93319 1.00027 0.84875 0.92250 0.89028 0.92294 0.90930 0.88009 0.91303 0.92195 0.89116 0.91768 0.89163 0.89317 0.91718 0.91536 0.89431 0.96509 0.96884 0.92113 0.88331 0.91626 0.89002 0.87133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.40 8.37 71.98 0.60 -2.79 16 2 C 0.12 2.21 1.13 -10.79 -0.01 2.20 16 3 C -0.13 -1.49 8.85 71.98 0.64 -0.85 16 4 C -0.18 -3.10 8.37 71.98 0.60 -2.50 16 5 O -0.36 -8.19 8.52 -55.49 -0.47 -8.66 16 6 C 0.65 17.40 7.74 129.79 1.00 18.40 16 7 O -0.59 -18.63 11.29 19.81 0.22 -18.40 16 8 N -0.59 -14.55 2.98 -949.34 -2.82 -17.38 16 9 C 0.14 3.59 6.43 86.36 0.56 4.15 16 10 C -0.12 -3.71 5.29 30.68 0.16 -3.55 16 11 C -0.04 -1.38 2.61 30.63 0.08 -1.30 16 12 S -0.32 -13.64 21.07 -56.49 -1.19 -14.83 16 13 C 0.10 5.16 5.39 71.24 0.38 5.54 16 14 C -0.54 -30.71 9.13 25.60 0.23 -30.48 16 15 H 0.06 3.42 7.71 -2.91 -0.02 3.40 16 16 C 0.01 0.83 5.46 84.65 0.46 1.29 16 17 N -0.92 -54.23 13.29 21.45 0.28 -53.94 16 18 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 22 C -0.10 -2.45 5.37 30.65 0.16 -2.29 16 23 C 0.12 2.39 6.44 86.34 0.56 2.95 16 24 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.06 1.49 5.88 -2.39 -0.01 1.47 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 1.42 5.88 -2.39 -0.01 1.40 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.09 2.50 7.00 -2.39 -0.02 2.48 16 34 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.07 2.33 6.86 -2.39 -0.02 2.31 16 37 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.02 0.93 7.10 -2.39 -0.02 0.91 16 39 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 41 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.11 1.86 6.93 -2.38 -0.02 1.84 16 Total: -1.00 -67.13 358.25 4.44 -62.69 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.96 Total: 13.86 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 5.43 Total: -9.22 kcal Atomic # 7 Polarization: -68.78 SS G_CDS: -2.54 Total: -71.32 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.25 Total: -27.07 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -13.64 SS G_CDS: -1.19 Total: -14.83 kcal Total: -67.13 4.44 -62.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496881929.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.066 kcal (2) G-P(sol) polarization free energy of solvation -67.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds