Wall clock time and date at job start Tue Mar 31 2020 08:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46887 * 2 1 4 4 N 1.46496 * 109.47093 * 119.99637 * 2 1 3 5 5 C 1.46511 * 119.99572 * 115.50151 * 4 2 1 6 6 C 1.50697 * 109.47089 * 269.99964 * 5 4 2 7 7 H 1.08006 * 119.99859 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00140 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99830 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 119.99751 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47352 * 90.00170 * 10 8 6 12 12 H 1.48501 * 109.47109 * 209.99979 * 10 8 6 13 13 H 1.48500 * 109.47298 * 329.99616 * 10 8 6 14 14 C 1.34776 * 120.00734 * 295.49773 * 4 2 1 15 15 O 1.21717 * 120.00463 * 238.29569 * 14 4 2 16 16 C 1.46243 * 119.99491 * 58.29048 * 14 4 2 17 17 C 1.35593 * 120.14923 * 108.99239 * 16 14 4 18 18 C 1.47110 * 117.87208 * 180.67416 * 17 16 14 19 19 C 1.39434 * 121.54122 * 196.41328 * 18 17 16 20 20 C 1.37960 * 119.51148 * 180.21827 * 19 18 17 21 21 C 1.38568 * 120.34357 * 0.02562 * 20 19 18 22 22 C 1.38257 * 120.64185 * 0.02562 * 21 20 19 23 23 C 1.38340 * 119.85339 * 359.96708 * 22 21 20 24 24 O 1.35563 * 121.32012 * 180.02562 * 23 22 21 25 25 C 1.42806 * 117.29028 * 146.11148 * 24 23 22 26 26 H 1.09005 * 109.46946 * 236.76329 * 1 2 3 27 27 H 1.09003 * 109.47619 * 356.75889 * 1 2 3 28 28 H 1.09000 * 109.47193 * 116.76412 * 1 2 3 29 29 H 1.08994 * 109.47020 * 240.00041 * 2 1 3 30 30 H 1.09000 * 109.47414 * 124.13823 * 3 2 1 31 31 H 1.08998 * 109.47018 * 244.13745 * 3 2 1 32 32 H 1.09006 * 109.47401 * 4.13860 * 3 2 1 33 33 H 1.09003 * 109.47038 * 29.99875 * 5 4 2 34 34 H 1.08996 * 109.46695 * 149.99940 * 5 4 2 35 35 H 0.97005 * 119.99747 * 179.97438 * 9 8 6 36 36 H 1.07998 * 121.06118 * 0.91629 * 17 16 14 37 37 H 1.08001 * 120.24391 * 0.24641 * 19 18 17 38 38 H 1.07996 * 119.82602 * 179.97438 * 20 19 18 39 39 H 1.08005 * 119.67917 * 180.02562 * 21 20 19 40 40 H 1.08001 * 120.07232 * 180.02562 * 22 21 20 41 41 H 1.09000 * 109.30186 * 288.00841 * 25 24 23 42 42 H 1.09005 * 109.14018 * 168.52753 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.7775 -1.9366 1.0640 6 6 1.8288 -3.1073 1.0830 7 1 0.7665 -2.9399 1.1840 8 6 2.3168 -4.3920 0.9727 9 7 1.4889 -5.4137 0.9898 10 14 4.1542 -4.6815 0.8003 11 1 4.7601 -4.8327 2.1475 12 1 4.3886 -5.9171 0.0106 13 1 4.7745 -3.5249 0.1054 14 6 1.7693 -0.1796 2.4182 15 8 2.6923 0.0975 3.1617 16 6 0.3900 0.0419 2.8509 17 6 -0.1582 -0.7461 3.8086 18 6 -1.5541 -0.4888 4.1950 19 6 -2.0906 -1.0018 5.3753 20 6 -3.4066 -0.7381 5.6946 21 6 -4.1914 0.0303 4.8498 22 6 -3.6703 0.5432 3.6764 23 6 -2.3528 0.2896 3.3393 24 8 -1.8112 0.7781 2.1965 25 6 -0.4306 1.1414 2.2294 26 1 -0.3633 -0.5633 0.8596 27 1 -0.3634 1.0260 0.0581 28 1 -0.3633 -0.4628 -0.9176 29 1 1.8933 -0.5138 -0.8899 30 1 2.7048 1.5929 0.8506 31 1 2.5837 1.6357 -0.9247 32 1 1.1946 2.1268 0.0742 33 1 3.3267 -1.9293 0.1224 34 1 3.4793 -2.0241 1.8933 35 1 1.8322 -6.3175 0.9118 36 1 0.4130 -1.5348 4.2755 37 1 -1.4803 -1.6008 6.0350 38 1 -3.8274 -1.1332 6.6073 39 1 -5.2203 0.2304 5.1104 40 1 -4.2902 1.1412 3.0248 41 1 -0.3117 2.0531 2.8147 42 1 -0.0834 1.3190 1.2114 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522587918.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:07 Heat of formation + Delta-G solvation = -0.997525 kcal Electronic energy + Delta-G solvation = -25244.201664 eV Core-core repulsion = 21770.087786 eV Total energy + Delta-G solvation = -3474.113878 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.18134 -40.80449 -38.53050 -37.66762 -35.39413 -34.96253 -33.31607 -31.69482 -31.37051 -29.68001 -28.18013 -26.84455 -25.80623 -23.98765 -23.65102 -23.24278 -21.15421 -19.24786 -19.14900 -18.88764 -18.18435 -17.62028 -17.07492 -16.68099 -16.42142 -16.08652 -16.00867 -15.39093 -15.29306 -14.71796 -14.67123 -14.48250 -14.31660 -14.05826 -13.97546 -13.70934 -13.34419 -13.27011 -12.88532 -12.72312 -12.66465 -12.53119 -12.28215 -12.24505 -11.93455 -11.78781 -11.67653 -11.37607 -11.03208 -10.91988 -10.84325 -9.65844 -9.24322 -8.88014 -8.34924 -6.40777 -0.40642 0.38133 0.86558 1.20616 1.32189 1.33837 1.43599 2.24459 2.27119 2.28662 2.81518 2.98391 3.39341 3.58053 3.66510 3.80310 3.99602 4.02662 4.13259 4.18689 4.24370 4.32874 4.37959 4.42626 4.62984 4.70373 4.76184 4.77554 4.85018 4.89103 4.91406 5.00605 5.04748 5.12998 5.21164 5.35318 5.39388 5.45934 5.49543 5.52364 5.78229 5.81899 6.29535 6.30123 6.61686 6.63624 6.79971 7.24860 8.81075 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.014883 B = 0.005299 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.859018 B = 5283.001881 C = 6234.298452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.139 3.861 3 C -0.168 4.168 4 N -0.658 5.658 5 C 0.240 3.760 6 C -0.538 4.538 7 H 0.036 0.964 8 C 0.018 3.982 9 N -0.940 5.940 10 Si 0.940 3.060 11 H -0.275 1.275 12 H -0.276 1.276 13 H -0.242 1.242 14 C 0.613 3.387 15 O -0.542 6.542 16 C -0.215 4.215 17 C -0.061 4.061 18 C -0.156 4.156 19 C -0.080 4.080 20 C -0.147 4.147 21 C -0.073 4.073 22 C -0.149 4.149 23 C 0.109 3.891 24 O -0.309 6.309 25 C 0.075 3.925 26 H 0.049 0.951 27 H 0.103 0.897 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.011 0.989 35 H 0.268 0.732 36 H 0.115 0.885 37 H 0.135 0.865 38 H 0.158 0.842 39 H 0.169 0.831 40 H 0.155 0.845 41 H 0.079 0.921 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.418 15.303 2.825 18.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.037 3.963 3 C -0.226 4.226 4 N -0.395 5.395 5 C 0.118 3.882 6 C -0.577 4.577 7 H 0.054 0.946 8 C -0.181 4.181 9 N -0.579 5.579 10 Si 0.763 3.237 11 H -0.200 1.200 12 H -0.201 1.201 13 H -0.166 1.166 14 C 0.404 3.596 15 O -0.418 6.418 16 C -0.219 4.219 17 C -0.080 4.080 18 C -0.157 4.157 19 C -0.098 4.098 20 C -0.165 4.165 21 C -0.091 4.091 22 C -0.168 4.168 23 C 0.064 3.936 24 O -0.223 6.223 25 C 0.002 3.998 26 H 0.068 0.932 27 H 0.120 0.880 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.029 0.971 35 H 0.077 0.923 36 H 0.133 0.867 37 H 0.153 0.847 38 H 0.176 0.824 39 H 0.187 0.813 40 H 0.173 0.827 41 H 0.097 0.903 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -8.990 15.309 3.010 18.007 hybrid contribution 1.185 -1.342 0.208 1.802 sum -7.806 13.968 3.218 16.321 Atomic orbital electron populations 1.23267 0.95056 1.02368 1.02984 1.21227 0.94423 0.93608 0.87053 1.22623 1.02532 0.94008 1.03447 1.47378 1.61247 1.26340 1.04512 1.19294 0.90868 0.80954 0.97060 1.21647 0.94293 0.91043 1.50698 0.94564 1.25744 1.02775 0.95510 0.94027 1.70044 1.37064 0.99415 1.51409 0.85829 0.79849 0.79024 0.79004 1.20033 1.20116 1.16571 1.18023 0.87731 0.72666 0.81175 1.90690 1.48455 1.45702 1.56969 1.22833 0.96279 1.03041 0.99755 1.21996 0.94027 0.97453 0.94518 1.19226 0.93625 1.03762 0.99086 1.21359 0.96694 0.97325 0.94416 1.21454 0.92872 1.00343 1.01800 1.21579 1.01201 0.94273 0.92004 1.20906 0.92783 1.03924 0.99148 1.19515 0.94285 0.93592 0.86175 1.85919 1.25492 1.79098 1.31790 1.23029 0.77258 0.92901 1.06635 0.93182 0.87970 0.91637 0.88792 0.93672 0.89235 0.89481 0.93612 0.97085 0.92281 0.86679 0.84742 0.82436 0.81334 0.82737 0.90316 0.81124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.40 7.64 71.98 0.55 -4.85 16 2 C 0.14 4.48 3.28 44.99 0.15 4.63 16 3 C -0.17 -4.06 9.25 71.98 0.67 -3.40 16 4 N -0.66 -27.73 2.24 -807.32 -1.81 -29.54 16 5 C 0.24 11.70 4.44 85.63 0.38 12.08 16 6 C -0.54 -30.82 9.94 25.60 0.25 -30.57 16 7 H 0.04 2.33 8.06 -2.91 -0.02 2.31 16 8 C 0.02 1.05 5.47 84.66 0.46 1.51 16 9 N -0.94 -58.17 13.96 21.45 0.30 -57.87 16 10 Si 0.94 43.75 27.47 68.60 1.88 45.64 16 11 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 13 H -0.24 -10.34 6.54 99.48 0.65 -9.69 16 14 C 0.61 26.37 4.84 86.32 0.42 26.79 16 15 O -0.54 -26.08 17.69 -4.40 -0.08 -26.16 16 16 C -0.22 -8.16 4.19 -18.42 -0.08 -8.24 16 17 C -0.06 -2.36 9.80 23.99 0.24 -2.13 16 18 C -0.16 -5.16 5.80 -20.09 -0.12 -5.27 16 19 C -0.08 -2.15 9.86 22.49 0.22 -1.93 16 20 C -0.15 -2.94 10.03 22.28 0.22 -2.72 16 21 C -0.07 -1.31 10.02 22.35 0.22 -1.09 16 22 C -0.15 -3.36 10.01 22.30 0.22 -3.14 16 23 C 0.11 3.29 6.47 22.86 0.15 3.44 16 24 O -0.31 -9.40 9.71 -88.69 -0.86 -10.26 16 25 C 0.07 2.21 5.47 71.21 0.39 2.60 16 26 H 0.05 1.88 4.82 -2.38 -0.01 1.87 16 27 H 0.10 2.33 4.79 -2.39 -0.01 2.32 16 28 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.09 2.99 7.77 -2.39 -0.02 2.97 16 30 H 0.04 1.30 7.18 -2.39 -0.02 1.28 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.09 1.59 6.20 -2.38 -0.01 1.57 16 33 H 0.05 2.09 6.95 -2.39 -0.02 2.07 16 34 H 0.01 0.57 7.27 -2.39 -0.02 0.56 16 35 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 36 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 37 H 0.13 3.32 8.06 -2.91 -0.02 3.30 16 38 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 39 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 40 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 41 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.17 4.38 1.55 -3.18 0.00 4.38 16 Total: -1.00 -74.57 335.93 4.77 -69.80 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.98 Total: 20.69 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: 4.35 Total: -12.29 kcal Atomic # 7 Polarization: -85.91 SS G_CDS: -1.51 Total: -87.42 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -0.94 Total: -36.42 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.88 Total: 45.64 kcal Total: -74.57 4.77 -69.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522587918.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.807 kcal (2) G-P(sol) polarization free energy of solvation -74.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds