Wall clock time and date at job start Tue Mar 31 2020 07:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46825 * 2 1 4 4 C 1.53004 * 109.46976 * 174.23236 * 3 2 1 5 5 C 1.53007 * 109.47005 * 183.02418 * 4 3 2 6 6 O 1.45205 * 109.47126 * 294.22584 * 3 2 1 7 7 C 1.34865 * 116.99824 * 99.62055 * 6 3 2 8 8 O 1.21591 * 120.00063 * 2.90509 * 7 6 3 9 9 C 1.46709 * 120.00166 * 182.90175 * 7 6 3 10 10 C 1.36216 * 125.45238 * 185.28806 * 9 7 6 11 11 C 1.41658 * 107.74648 * 180.28962 * 10 9 7 12 12 C 1.40039 * 133.34213 * 179.78072 * 11 10 9 13 13 C 1.36572 * 119.83297 * 179.97438 * 12 11 10 14 14 C 1.38863 * 120.59889 * 359.97438 * 13 12 11 15 15 C 1.37835 * 120.63964 * 359.97438 * 14 13 12 16 16 C 1.39098 * 119.81778 * 0.02562 * 15 14 13 17 17 N 1.37814 * 133.15185 * 180.02562 * 16 15 14 18 18 C 1.36869 * 125.62160 * 359.97375 * 17 16 15 19 19 H 1.08005 * 119.99990 * 224.01231 * 18 17 16 20 20 C 1.39027 * 120.00077 * 44.01781 * 18 17 16 21 21 N 1.31340 * 119.99774 * 198.98885 * 20 18 17 22 22 Si 1.86798 * 120.00013 * 18.71667 * 20 18 17 23 23 H 1.48498 * 109.47001 * 265.22138 * 22 20 18 24 24 H 1.48505 * 109.46644 * 25.21649 * 22 20 18 25 25 H 1.48494 * 109.47142 * 145.21579 * 22 20 18 26 26 H 1.08997 * 109.47409 * 300.00265 * 1 2 3 27 27 H 1.09003 * 109.47299 * 60.00404 * 1 2 3 28 28 H 1.09000 * 109.47402 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47409 * 239.99735 * 2 1 3 30 30 H 1.09000 * 109.46911 * 119.99266 * 2 1 3 31 31 H 1.08997 * 109.47849 * 54.22929 * 3 2 1 32 32 H 1.08996 * 109.46734 * 303.02157 * 4 3 2 33 33 H 1.08998 * 109.47552 * 63.02267 * 4 3 2 34 34 H 1.08999 * 109.46809 * 304.49102 * 5 4 3 35 35 H 1.08995 * 109.46977 * 64.48838 * 5 4 3 36 36 H 1.09001 * 109.46454 * 184.49008 * 5 4 3 37 37 H 1.07999 * 126.12586 * 0.02562 * 10 9 7 38 38 H 1.08001 * 120.08128 * 359.96820 * 12 11 10 39 39 H 1.08002 * 119.69911 * 180.02562 * 13 12 11 40 40 H 1.07997 * 119.67907 * 180.02562 * 14 13 12 41 41 H 1.07998 * 120.09286 * 179.97438 * 15 14 13 42 42 H 0.97001 * 119.99674 * 174.70680 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5631 1.4450 0.1450 5 6 4.0658 2.8881 0.2208 6 8 1.6716 2.0861 -1.2484 7 6 0.5866 2.8869 -1.2276 8 8 -0.0031 3.0846 -0.1829 9 6 0.1180 3.5196 -2.4656 10 6 -0.8970 4.4235 -2.5557 11 6 -1.0364 4.7817 -3.9191 12 6 -1.8983 5.6490 -4.6017 13 6 -1.7883 5.7896 -5.9557 14 6 -0.8278 5.0800 -6.6644 15 6 0.0326 4.2212 -6.0147 16 6 -0.0601 4.0612 -4.6361 17 7 0.6392 3.2974 -3.7267 18 6 1.6741 2.4525 -4.0241 19 1 1.7159 1.4710 -3.5753 20 6 2.6715 2.8577 -4.9037 21 7 3.4422 1.9636 -5.4796 22 14 2.9106 4.6733 -5.2724 23 1 2.1639 5.0305 -6.5053 24 1 2.4021 5.4805 -4.1344 25 1 4.3556 4.9520 -5.4705 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.5947 1.9854 0.8337 32 1 3.8422 0.9147 1.0554 33 1 4.0109 0.9490 -0.7161 34 1 3.7185 3.4401 -0.6526 35 1 3.6814 3.3597 1.1251 36 1 5.1556 2.8924 0.2437 37 1 -1.4920 4.7967 -1.7352 38 1 -2.6482 6.2052 -4.0588 39 1 -2.4539 6.4594 -6.4800 40 1 -0.7536 5.2029 -7.7348 41 1 0.7760 3.6734 -6.5746 42 1 4.0864 2.2386 -6.1506 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762110799.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:51 Heat of formation + Delta-G solvation = -38.866691 kcal Electronic energy + Delta-G solvation = -25356.877354 eV Core-core repulsion = 21881.121345 eV Total energy + Delta-G solvation = -3475.756009 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.84647 -39.63083 -36.63810 -36.14892 -33.90216 -33.55650 -31.92456 -31.41068 -29.35404 -28.52323 -26.40575 -24.91150 -23.84498 -21.84760 -21.19304 -21.05775 -20.22693 -19.29677 -18.34443 -17.36774 -16.14910 -15.69715 -15.65445 -15.24159 -14.48428 -14.22318 -13.97439 -13.78078 -13.76629 -13.34069 -13.24853 -13.06969 -12.88955 -12.56760 -12.34734 -12.08358 -11.83506 -11.54666 -11.45143 -11.35391 -11.05302 -10.97956 -10.96244 -10.71913 -10.54540 -10.43137 -10.25196 -10.05391 -9.90880 -9.74639 -9.48827 -8.72590 -7.44401 -7.04577 -6.89066 -4.55572 1.43591 2.43338 2.66389 2.99056 3.09887 3.20336 3.27292 3.86131 3.90602 4.10331 4.55894 4.75706 4.81627 5.10135 5.23017 5.32050 5.39949 5.54398 5.61498 5.64892 5.67556 5.76657 5.86393 5.99780 6.04440 6.07262 6.11203 6.12563 6.18570 6.28594 6.30377 6.40531 6.48077 6.51238 6.57688 6.70299 6.78281 7.03026 7.16677 7.21913 7.30463 7.55579 7.56897 7.83278 8.13551 8.45517 8.68449 8.98683 10.11919 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.015055 B = 0.006420 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.409835 B = 4360.018139 C = 5369.203546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.136 4.136 3 C 0.079 3.921 4 C -0.120 4.120 5 C -0.154 4.154 6 O -0.317 6.317 7 C 0.544 3.456 8 O -0.524 6.524 9 C -0.013 4.013 10 C -0.155 4.155 11 C -0.126 4.126 12 C -0.076 4.076 13 C -0.157 4.157 14 C -0.132 4.132 15 C -0.097 4.097 16 C 0.056 3.944 17 N -0.256 5.256 18 C -0.337 4.337 19 H 0.129 0.871 20 C 0.085 3.915 21 N -0.823 5.823 22 Si 0.866 3.134 23 H -0.245 1.245 24 H -0.255 1.255 25 H -0.281 1.281 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.139 0.861 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.119 0.881 42 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.718 0.714 4.888 5.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.173 4.173 3 C 0.024 3.976 4 C -0.157 4.157 5 C -0.211 4.211 6 O -0.233 6.233 7 C 0.391 3.609 8 O -0.415 6.415 9 C -0.126 4.126 10 C -0.182 4.182 11 C -0.131 4.131 12 C -0.095 4.095 13 C -0.176 4.176 14 C -0.152 4.152 15 C -0.117 4.117 16 C -0.059 4.059 17 N 0.081 4.919 18 C -0.464 4.464 19 H 0.147 0.853 20 C -0.129 4.129 21 N -0.452 5.452 22 Si 0.690 3.310 23 H -0.170 1.170 24 H -0.178 1.178 25 H -0.207 1.207 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.157 0.843 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.137 0.863 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.291 0.395 5.106 5.281 hybrid contribution 0.371 0.672 -0.169 0.786 sum -0.920 1.067 4.937 5.134 Atomic orbital electron populations 1.21756 0.95361 1.01318 1.02423 1.21899 0.96746 0.95793 1.02875 1.22832 0.95439 0.92944 0.86395 1.21646 0.93290 0.98265 1.02547 1.21747 1.00653 0.96491 1.02228 1.86977 1.43641 1.56510 1.36155 1.19963 0.77826 0.75684 0.87421 1.90770 1.56875 1.61832 1.31980 1.19255 1.04133 1.05676 0.83495 1.20401 1.01188 1.01217 0.95426 1.17926 0.99617 1.02467 0.93097 1.20159 0.97879 0.97644 0.93813 1.20365 1.00605 1.02587 0.94072 1.20586 0.97072 0.98787 0.98769 1.20210 1.00183 1.00036 0.91261 1.18402 0.95736 1.00300 0.91424 1.40391 1.21681 1.27398 1.02432 1.19480 1.00099 0.97630 1.29233 0.85346 1.25452 0.93945 0.99358 0.94137 1.69624 1.19865 1.34910 1.20793 0.87000 0.78206 0.83858 0.81908 1.16970 1.17827 1.20671 0.92433 0.92740 0.92768 0.90669 0.90724 0.89722 0.90652 0.90453 0.91736 0.93156 0.92653 0.84325 0.87069 0.87197 0.86900 0.86293 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.12 37.16 0.34 -1.95 16 2 C -0.14 -1.96 5.64 -26.73 -0.15 -2.11 16 3 C 0.08 1.30 2.23 -26.73 -0.06 1.24 16 4 C -0.12 -1.71 5.66 -26.73 -0.15 -1.86 16 5 C -0.15 -2.25 9.85 37.16 0.37 -1.89 16 6 O -0.32 -6.58 7.01 -40.94 -0.29 -6.86 16 7 C 0.54 11.96 6.52 34.15 0.22 12.18 16 8 O -0.52 -11.44 15.46 -19.33 -0.30 -11.73 16 9 C -0.01 -0.30 6.76 -82.27 -0.56 -0.86 16 10 C -0.16 -3.39 10.55 -39.00 -0.41 -3.80 16 11 C -0.13 -2.76 6.16 -106.89 -0.66 -3.41 16 12 C -0.08 -1.41 10.06 -39.51 -0.40 -1.80 16 13 C -0.16 -2.72 9.97 -39.95 -0.40 -3.12 16 14 C -0.13 -2.45 10.02 -39.50 -0.40 -2.85 16 15 C -0.10 -2.13 6.83 -39.41 -0.27 -2.40 16 16 C 0.06 1.32 5.16 -83.83 -0.43 0.89 16 17 N -0.26 -6.34 2.39 -56.10 -0.13 -6.47 16 18 C -0.34 -8.71 8.98 -15.01 -0.13 -8.85 16 19 H 0.13 3.51 7.31 -52.48 -0.38 3.13 16 20 C 0.09 2.17 4.93 -17.47 -0.09 2.08 16 21 N -0.82 -21.25 13.95 55.50 0.77 -20.47 16 22 Si 0.87 20.12 24.38 -169.99 -4.14 15.97 16 23 H -0.25 -5.38 5.65 56.52 0.32 -5.06 16 24 H -0.25 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.97 6.84 -51.93 -0.36 0.62 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.42 6.83 -51.93 -0.35 1.06 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 1.13 7.64 -51.93 -0.40 0.73 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.14 2.69 8.06 -52.49 -0.42 2.27 16 38 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 39 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 40 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.12 2.65 5.98 -52.49 -0.31 2.34 16 42 H 0.29 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 341.79 15.07 5.15 5.15 Total: -1.00 -27.68 341.79 -8.21 -35.89 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -6.10 Total: 7.02 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -3.17 Total: -18.50 kcal Atomic # 7 Polarization: -27.58 SS G_CDS: 0.64 Total: -26.94 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.59 Total: -18.60 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.14 Total: 15.97 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.68 -8.21 -35.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762110799.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.976 kcal (2) G-P(sol) polarization free energy of solvation -27.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds