Wall clock time and date at job start Tue Mar 31 2020 07:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46825 * 2 1 4 4 C 1.53004 * 109.46976 * 174.23236 * 3 2 1 5 5 C 1.53007 * 109.47005 * 183.02418 * 4 3 2 6 6 O 1.45205 * 109.47126 * 294.22584 * 3 2 1 7 7 C 1.34865 * 116.99824 * 99.62055 * 6 3 2 8 8 O 1.21591 * 120.00063 * 2.90509 * 7 6 3 9 9 C 1.46709 * 120.00166 * 182.90175 * 7 6 3 10 10 C 1.36216 * 125.45238 * 185.28806 * 9 7 6 11 11 C 1.41658 * 107.74648 * 180.28962 * 10 9 7 12 12 C 1.40039 * 133.34213 * 179.78072 * 11 10 9 13 13 C 1.36572 * 119.83297 * 179.97438 * 12 11 10 14 14 C 1.38863 * 120.59889 * 359.97438 * 13 12 11 15 15 C 1.37835 * 120.63964 * 359.97438 * 14 13 12 16 16 C 1.39098 * 119.81778 * 0.02562 * 15 14 13 17 17 N 1.37814 * 133.15185 * 180.02562 * 16 15 14 18 18 C 1.36869 * 125.62160 * 359.97375 * 17 16 15 19 19 H 1.08005 * 119.99990 * 224.01231 * 18 17 16 20 20 C 1.39027 * 120.00077 * 44.01781 * 18 17 16 21 21 N 1.31340 * 119.99774 * 198.98885 * 20 18 17 22 22 Si 1.86798 * 120.00013 * 18.71667 * 20 18 17 23 23 H 1.48498 * 109.47001 * 265.22138 * 22 20 18 24 24 H 1.48505 * 109.46644 * 25.21649 * 22 20 18 25 25 H 1.48494 * 109.47142 * 145.21579 * 22 20 18 26 26 H 1.08997 * 109.47409 * 300.00265 * 1 2 3 27 27 H 1.09003 * 109.47299 * 60.00404 * 1 2 3 28 28 H 1.09000 * 109.47402 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47409 * 239.99735 * 2 1 3 30 30 H 1.09000 * 109.46911 * 119.99266 * 2 1 3 31 31 H 1.08997 * 109.47849 * 54.22929 * 3 2 1 32 32 H 1.08996 * 109.46734 * 303.02157 * 4 3 2 33 33 H 1.08998 * 109.47552 * 63.02267 * 4 3 2 34 34 H 1.08999 * 109.46809 * 304.49102 * 5 4 3 35 35 H 1.08995 * 109.46977 * 64.48838 * 5 4 3 36 36 H 1.09001 * 109.46454 * 184.49008 * 5 4 3 37 37 H 1.07999 * 126.12586 * 0.02562 * 10 9 7 38 38 H 1.08001 * 120.08128 * 359.96820 * 12 11 10 39 39 H 1.08002 * 119.69911 * 180.02562 * 13 12 11 40 40 H 1.07997 * 119.67907 * 180.02562 * 14 13 12 41 41 H 1.07998 * 120.09286 * 179.97438 * 15 14 13 42 42 H 0.97001 * 119.99674 * 174.70680 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5631 1.4450 0.1450 5 6 4.0658 2.8881 0.2208 6 8 1.6716 2.0861 -1.2484 7 6 0.5866 2.8869 -1.2276 8 8 -0.0031 3.0846 -0.1829 9 6 0.1180 3.5196 -2.4656 10 6 -0.8970 4.4235 -2.5557 11 6 -1.0364 4.7817 -3.9191 12 6 -1.8983 5.6490 -4.6017 13 6 -1.7883 5.7896 -5.9557 14 6 -0.8278 5.0800 -6.6644 15 6 0.0326 4.2212 -6.0147 16 6 -0.0601 4.0612 -4.6361 17 7 0.6392 3.2974 -3.7267 18 6 1.6741 2.4525 -4.0241 19 1 1.7159 1.4710 -3.5753 20 6 2.6715 2.8577 -4.9037 21 7 3.4422 1.9636 -5.4796 22 14 2.9106 4.6733 -5.2724 23 1 2.1639 5.0305 -6.5053 24 1 2.4021 5.4805 -4.1344 25 1 4.3556 4.9520 -5.4705 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.5947 1.9854 0.8337 32 1 3.8422 0.9147 1.0554 33 1 4.0109 0.9490 -0.7161 34 1 3.7185 3.4401 -0.6526 35 1 3.6814 3.3597 1.1251 36 1 5.1556 2.8924 0.2437 37 1 -1.4920 4.7967 -1.7352 38 1 -2.6482 6.2052 -4.0588 39 1 -2.4539 6.4594 -6.4800 40 1 -0.7536 5.2029 -7.7348 41 1 0.7760 3.6734 -6.5746 42 1 4.0864 2.2386 -6.1506 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762110799.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:50 Heat of formation + Delta-G solvation = -51.677313 kcal Electronic energy + Delta-G solvation = -25357.432864 eV Core-core repulsion = 21881.121345 eV Total energy + Delta-G solvation = -3476.311519 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.52907 -41.22014 -38.15294 -37.74946 -35.44023 -35.25805 -33.15723 -33.11697 -30.95110 -30.15785 -27.71352 -26.74239 -25.41494 -23.04382 -22.83119 -22.56294 -21.64147 -21.00565 -20.11541 -18.99370 -17.81884 -17.34544 -17.25178 -16.74869 -16.24303 -15.74617 -15.42005 -15.26704 -15.03934 -14.96426 -14.83303 -14.70586 -14.41813 -14.05280 -13.76974 -13.69942 -13.26698 -13.14390 -12.93651 -12.74849 -12.60070 -12.51073 -12.32193 -12.27813 -12.01301 -11.91234 -11.79077 -11.58373 -11.53680 -11.31020 -11.12530 -10.45520 -9.10239 -8.82527 -8.68422 -6.49811 -0.19974 0.85632 1.00808 1.14979 1.22694 1.31216 1.75842 1.99682 2.15419 2.39174 2.74356 3.11831 3.58351 3.81718 3.86922 3.98975 4.00745 4.22752 4.27350 4.33702 4.37940 4.42186 4.46609 4.54572 4.62805 4.75104 4.81163 4.82418 4.90665 4.92831 4.98466 5.07278 5.07876 5.10416 5.21932 5.24081 5.28969 5.39334 5.51714 5.66869 5.77095 5.82113 5.93658 6.09048 6.38026 6.70635 6.89523 7.16797 8.26570 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.015055 B = 0.006420 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.409835 B = 4360.018139 C = 5369.203546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C 0.068 3.932 4 C -0.115 4.115 5 C -0.153 4.153 6 O -0.335 6.335 7 C 0.544 3.456 8 O -0.530 6.530 9 C -0.042 4.042 10 C -0.146 4.146 11 C -0.146 4.146 12 C -0.071 4.071 13 C -0.150 4.150 14 C -0.107 4.107 15 C -0.141 4.141 16 C 0.040 3.960 17 N -0.283 5.283 18 C -0.348 4.348 19 H 0.096 0.904 20 C 0.060 3.940 21 N -0.860 5.860 22 Si 0.911 3.089 23 H -0.222 1.222 24 H -0.283 1.283 25 H -0.274 1.274 26 H 0.059 0.941 27 H 0.016 0.984 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.117 0.883 33 H 0.063 0.937 34 H 0.024 0.976 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.161 0.839 38 H 0.149 0.851 39 H 0.159 0.841 40 H 0.149 0.851 41 H 0.104 0.896 42 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.248 2.431 4.856 6.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.168 4.168 3 C 0.014 3.986 4 C -0.153 4.153 5 C -0.210 4.210 6 O -0.251 6.251 7 C 0.391 3.609 8 O -0.422 6.422 9 C -0.153 4.153 10 C -0.174 4.174 11 C -0.150 4.150 12 C -0.089 4.089 13 C -0.168 4.168 14 C -0.127 4.127 15 C -0.161 4.161 16 C -0.074 4.074 17 N 0.052 4.948 18 C -0.475 4.475 19 H 0.113 0.887 20 C -0.151 4.151 21 N -0.491 5.491 22 Si 0.734 3.266 23 H -0.145 1.145 24 H -0.208 1.208 25 H -0.200 1.200 26 H 0.078 0.922 27 H 0.035 0.965 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.133 0.867 31 H 0.101 0.899 32 H 0.135 0.865 33 H 0.081 0.919 34 H 0.043 0.957 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.179 0.821 38 H 0.167 0.833 39 H 0.177 0.823 40 H 0.166 0.834 41 H 0.123 0.877 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.815 2.099 5.059 6.159 hybrid contribution 0.617 0.226 -0.117 0.668 sum -2.198 2.324 4.943 5.888 Atomic orbital electron populations 1.21730 0.95980 1.02223 1.00591 1.21930 0.96160 0.94586 1.04162 1.23271 0.97051 0.93725 0.84594 1.21706 0.91412 0.98269 1.03874 1.21739 1.01941 0.96433 1.00903 1.86967 1.43024 1.56354 1.38709 1.19889 0.78100 0.75770 0.87102 1.90729 1.57197 1.62322 1.31923 1.19756 1.04736 1.06809 0.84032 1.20782 1.00161 1.00001 0.96414 1.18363 1.00294 1.03390 0.92961 1.20652 0.97324 0.96273 0.94686 1.20919 1.00158 1.02044 0.93692 1.21149 0.95004 0.95958 1.00629 1.20343 1.02367 1.02654 0.90738 1.18935 0.96110 0.99912 0.92401 1.40370 1.22446 1.28854 1.03123 1.19099 1.01401 0.97040 1.29960 0.88667 1.25831 0.93513 1.01659 0.94086 1.69656 1.21194 1.36017 1.22267 0.86373 0.78347 0.80423 0.81467 1.14522 1.20816 1.19983 0.92211 0.96482 0.90492 0.91873 0.86714 0.89873 0.86499 0.91869 0.95712 0.91903 0.90695 0.82122 0.83337 0.82323 0.83364 0.87749 0.89657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.52 9.12 71.98 0.66 -3.87 16 2 C -0.13 -3.75 5.64 30.59 0.17 -3.58 16 3 C 0.07 2.28 2.23 30.60 0.07 2.34 16 4 C -0.12 -3.25 5.66 30.60 0.17 -3.08 16 5 C -0.15 -4.52 9.85 71.98 0.71 -3.81 16 6 O -0.33 -14.80 7.01 -57.78 -0.41 -15.21 16 7 C 0.54 25.13 6.52 70.03 0.46 25.59 16 8 O -0.53 -23.78 15.46 19.54 0.30 -23.48 16 9 C -0.04 -2.04 6.76 39.87 0.27 -1.77 16 10 C -0.15 -6.37 10.55 22.64 0.24 -6.13 16 11 C -0.15 -6.17 6.16 -21.34 -0.13 -6.30 16 12 C -0.07 -2.33 10.06 22.32 0.22 -2.10 16 13 C -0.15 -4.37 9.97 22.03 0.22 -4.15 16 14 C -0.11 -3.59 10.02 22.32 0.22 -3.37 16 15 C -0.14 -6.06 6.83 22.38 0.15 -5.91 16 16 C 0.04 1.91 5.16 39.07 0.20 2.11 16 17 N -0.28 -14.69 2.39 -331.40 -0.79 -15.48 16 18 C -0.35 -19.27 8.98 84.10 0.76 -18.51 16 19 H 0.10 5.73 7.31 -2.91 -0.02 5.71 16 20 C 0.06 3.20 4.93 84.96 0.42 3.62 16 21 N -0.86 -46.74 13.95 21.67 0.30 -46.44 16 22 Si 0.91 42.82 24.38 68.60 1.67 44.49 16 23 H -0.22 -9.47 5.65 99.48 0.56 -8.91 16 24 H -0.28 -14.45 7.11 99.48 0.71 -13.75 16 25 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 26 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.02 0.62 6.84 -2.39 -0.02 0.60 16 28 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.08 2.80 6.83 -2.39 -0.02 2.78 16 32 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.02 0.90 7.64 -2.39 -0.02 0.88 16 35 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.16 6.07 8.06 -2.91 -0.02 6.05 16 38 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 39 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 40 H 0.15 3.88 8.06 -2.91 -0.02 3.85 16 41 H 0.10 4.72 5.98 -2.91 -0.02 4.70 16 42 H 0.29 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -65.08 341.79 6.76 -58.32 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 0.87 Total: 26.70 kcal Atomic # 6 Polarization: -33.72 SS G_CDS: 4.81 Total: -28.91 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: -0.49 Total: -61.91 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -0.10 Total: -38.68 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.67 Total: 44.49 kcal Total: -65.08 6.76 -58.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762110799.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.644 kcal (2) G-P(sol) polarization free energy of solvation -65.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds