Wall clock time and date at job start Tue Mar 31 2020 07:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36671 * 125.57048 * 2 1 4 4 C 1.34446 * 109.62805 * 180.02562 * 3 2 1 5 5 C 1.41633 * 107.84590 * 359.97438 * 4 3 2 6 6 C 1.37897 * 125.56775 * 180.02562 * 2 1 3 7 7 C 1.38938 * 133.34827 * 359.93953 * 6 2 1 8 8 C 1.38095 * 120.26632 * 180.02562 * 7 6 2 9 9 C 1.38237 * 120.82252 * 359.97438 * 8 7 6 10 10 C 1.39340 * 120.24934 * 0.02562 * 9 8 7 11 11 C 1.47232 * 120.32246 * 180.02562 * 10 9 8 12 12 O 1.21531 * 119.99819 * 179.97438 * 11 10 9 13 13 O 1.34782 * 119.99927 * 0.02562 * 11 10 9 14 14 C 1.45210 * 117.00074 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47083 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.46874 * 299.99908 * 15 14 13 17 17 C 1.52993 * 109.47179 * 59.99910 * 15 14 13 18 18 C 1.50702 * 109.46630 * 180.02562 * 15 14 13 19 19 H 1.07998 * 120.00430 * 359.97438 * 18 15 14 20 20 C 1.37875 * 119.99747 * 180.02562 * 18 15 14 21 21 N 1.31524 * 120.00110 * 359.97438 * 20 18 15 22 22 Si 1.86795 * 120.00257 * 179.97438 * 20 18 15 23 23 H 1.48505 * 109.46984 * 59.99530 * 22 20 18 24 24 H 1.48500 * 109.47627 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47119 * 300.00180 * 22 20 18 26 26 H 1.08998 * 109.47028 * 89.97266 * 1 2 3 27 27 H 1.08998 * 109.47432 * 209.97744 * 1 2 3 28 28 H 1.09007 * 109.47364 * 329.97752 * 1 2 3 29 29 H 1.08005 * 125.19025 * 0.05759 * 3 2 1 30 30 H 1.08001 * 126.08110 * 179.97438 * 4 3 2 31 31 H 1.07988 * 119.86838 * 0.31434 * 7 6 2 32 32 H 1.08000 * 119.58580 * 180.02562 * 8 7 6 33 33 H 1.08002 * 119.87815 * 180.02562 * 9 8 7 34 34 H 1.09000 * 109.46845 * 300.00038 * 14 13 11 35 35 H 1.08997 * 109.46829 * 59.99483 * 14 13 11 36 36 H 1.08996 * 109.47368 * 60.00594 * 16 15 14 37 37 H 1.09003 * 109.46562 * 180.02562 * 16 15 14 38 38 H 1.08999 * 109.46895 * 299.99753 * 16 15 14 39 39 H 1.09005 * 109.47602 * 60.00213 * 17 15 14 40 40 H 1.09003 * 109.47103 * 179.97438 * 17 15 14 41 41 H 1.08996 * 109.47454 * 299.99645 * 17 15 14 42 42 H 0.96998 * 120.00032 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2600 1.1117 0.0000 4 6 3.5528 0.7424 -0.0006 5 6 3.5998 -0.6732 -0.0003 6 6 2.2671 -1.1217 -0.0005 7 6 2.0000 -2.4852 0.0000 8 6 3.0366 -3.3975 -0.0002 9 6 4.3526 -2.9743 -0.0014 10 6 4.6524 -1.6135 -0.0019 11 6 6.0534 -1.1610 -0.0038 12 8 6.3081 0.0274 -0.0046 13 8 7.0535 -2.0646 -0.0055 14 6 8.4100 -1.5466 -0.0078 15 6 9.4010 -2.7123 -0.0089 16 6 9.1838 -3.5675 1.2410 17 6 9.1799 -3.5685 -1.2574 18 6 10.8089 -2.1746 -0.0107 19 1 10.9797 -1.1082 -0.0114 20 6 11.8789 -3.0441 -0.0125 21 7 11.6709 -4.3428 -0.0121 22 14 13.6239 -2.3778 -0.0154 23 1 13.8386 -1.5471 1.1967 24 1 14.5859 -3.5091 -0.0163 25 1 13.8346 -1.5473 -1.2282 26 1 -0.3633 0.0005 -1.0277 27 1 -0.3634 -0.8901 0.5135 28 1 -0.3634 0.8898 0.5142 29 1 1.9041 2.1314 0.0009 30 1 4.4041 1.4070 -0.0011 31 1 0.9776 -2.8329 -0.0042 32 1 2.8164 -4.4548 -0.0003 33 1 5.1515 -3.7011 -0.0020 34 1 8.5646 -0.9369 -0.8981 35 1 8.5676 -0.9369 0.8818 36 1 8.1656 -3.9564 1.2428 37 1 9.8901 -4.3977 1.2404 38 1 9.3414 -2.9575 2.1305 39 1 9.3347 -2.9593 -2.1480 40 1 9.8863 -4.3987 -1.2584 41 1 8.1617 -3.9574 -1.2557 42 1 12.4236 -4.9545 -0.0129 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764844056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:01 Heat of formation + Delta-G solvation = -25.705235 kcal Electronic energy + Delta-G solvation = -24038.690474 eV Core-core repulsion = 20563.505189 eV Total energy + Delta-G solvation = -3475.185285 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.63341 -39.59113 -37.05436 -36.32383 -34.71578 -33.15477 -31.31370 -30.66103 -29.04454 -26.55470 -25.79153 -25.55058 -25.10979 -23.62035 -21.63706 -21.45036 -19.83685 -18.75239 -17.39526 -17.00480 -16.20232 -15.73657 -15.72164 -15.57698 -15.42146 -15.16180 -14.60889 -13.96772 -13.47471 -13.28165 -13.02965 -12.88654 -12.72930 -12.72166 -12.48169 -11.86804 -11.65048 -11.46464 -11.44796 -11.30838 -11.09785 -10.89287 -10.69355 -10.34455 -10.15098 -9.88764 -9.79474 -9.76991 -9.32390 -9.23069 -8.70291 -8.32322 -8.28136 -7.73515 -5.96992 -4.08322 0.59051 1.50794 2.58318 2.65592 2.96994 3.33069 3.33857 3.37184 3.44081 4.00438 4.42132 4.43602 4.58329 4.76029 4.80929 4.91119 5.04523 5.10319 5.28038 5.29217 5.42556 5.53285 5.76717 5.92165 6.10291 6.18974 6.20345 6.39763 6.44199 6.54414 6.62331 6.67837 6.84467 7.04778 7.05475 7.13069 7.16670 7.21206 7.24433 7.47841 7.68870 7.75094 8.11499 8.22287 8.39207 8.47153 8.91513 9.56803 11.04189 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.033941 B = 0.003082 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.763183 B = 9083.430403 C = 9711.829881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.486 5.486 3 C 0.046 3.954 4 C -0.189 4.189 5 C -0.051 4.051 6 C 0.073 3.927 7 C -0.096 4.096 8 C -0.117 4.117 9 C -0.077 4.077 10 C -0.079 4.079 11 C 0.499 3.501 12 O -0.514 6.514 13 O -0.345 6.345 14 C 0.086 3.914 15 C 0.071 3.929 16 C -0.129 4.129 17 C -0.129 4.129 18 C -0.512 4.512 19 H 0.056 0.944 20 C 0.068 3.932 21 N -0.883 5.883 22 Si 0.895 3.105 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.170 0.830 30 H 0.156 0.844 31 H 0.121 0.879 32 H 0.133 0.867 33 H 0.143 0.857 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.017 0.983 37 H 0.084 0.916 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.084 0.916 41 H 0.017 0.983 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.270 4.349 0.086 23.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.170 5.170 3 C -0.079 4.079 4 C -0.213 4.213 5 C -0.056 4.056 6 C -0.032 4.032 7 C -0.117 4.117 8 C -0.137 4.137 9 C -0.096 4.096 10 C -0.081 4.081 11 C 0.344 3.656 12 O -0.405 6.405 13 O -0.261 6.261 14 C 0.013 3.987 15 C 0.071 3.929 16 C -0.187 4.187 17 C -0.187 4.187 18 C -0.550 4.550 19 H 0.074 0.926 20 C -0.133 4.133 21 N -0.521 5.521 22 Si 0.723 3.277 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.203 1.203 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.187 0.813 30 H 0.174 0.826 31 H 0.139 0.861 32 H 0.151 0.849 33 H 0.161 0.839 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.102 0.898 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.102 0.898 41 H 0.036 0.964 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.401 4.540 0.086 23.837 hybrid contribution 0.952 0.601 -0.011 1.126 sum -22.449 5.141 0.075 23.030 Atomic orbital electron populations 1.21910 0.76988 1.04149 1.02940 1.43853 1.05717 1.04471 1.62935 1.21975 0.90214 0.91276 1.04462 1.20989 0.96376 0.93880 1.10087 1.17964 0.90863 0.93770 1.03054 1.18131 0.89611 0.88553 1.06953 1.20164 0.99603 0.89130 1.02780 1.20787 0.91708 0.99320 1.01850 1.21411 0.97292 0.94517 0.96351 1.18687 0.89152 0.93212 1.07011 1.21001 0.86598 0.84576 0.73395 1.90751 1.85437 1.18031 1.46255 1.86580 1.17463 1.39338 1.82676 1.23655 0.75347 0.99161 1.00559 1.18228 0.90912 0.90063 0.93744 1.21768 0.98574 1.01512 0.96846 1.21767 0.98573 1.01515 0.96848 1.20918 0.89514 0.92978 1.51561 0.92566 1.24851 0.98930 0.94817 0.94736 1.69825 1.30829 1.01331 1.50127 0.86609 0.84035 0.78397 0.78663 1.20268 1.21241 1.20264 0.91287 0.90153 0.89871 0.81281 0.82597 0.86142 0.84883 0.83910 0.92575 0.92577 0.96408 0.89782 0.95859 0.95862 0.89779 0.96405 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.44 11.08 59.85 0.66 1.10 16 2 N -0.49 -4.93 3.19 -121.80 -0.39 -5.31 16 3 C 0.05 0.49 11.33 -16.73 -0.19 0.30 16 4 C -0.19 -2.70 10.03 -39.63 -0.40 -3.10 16 5 C -0.05 -0.80 6.01 -106.60 -0.64 -1.44 16 6 C 0.07 0.93 6.82 -83.98 -0.57 0.35 16 7 C -0.10 -1.03 9.98 -39.37 -0.39 -1.42 16 8 C -0.12 -1.32 9.99 -39.63 -0.40 -1.72 16 9 C -0.08 -1.09 9.60 -39.17 -0.38 -1.47 16 10 C -0.08 -1.33 5.90 -104.73 -0.62 -1.95 16 11 C 0.50 9.99 7.89 34.38 0.27 10.26 16 12 O -0.51 -11.14 14.76 -19.29 -0.28 -11.42 16 13 O -0.34 -7.32 8.13 -40.72 -0.33 -7.65 16 14 C 0.09 1.98 4.27 37.16 0.16 2.14 16 15 C 0.07 1.78 0.58 -155.66 -0.09 1.69 16 16 C -0.13 -3.18 8.11 37.16 0.30 -2.88 16 17 C -0.13 -3.18 8.11 37.15 0.30 -2.88 16 18 C -0.51 -13.94 8.01 -34.44 -0.28 -14.22 16 19 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 20 C 0.07 1.85 5.15 -17.82 -0.09 1.76 16 21 N -0.88 -24.28 9.35 55.43 0.52 -23.76 16 22 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.29 8.14 -51.92 -0.42 -0.14 16 29 H 0.17 1.13 8.06 -52.48 -0.42 0.71 16 30 H 0.16 2.37 7.00 -52.49 -0.37 2.01 16 31 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.14 2.02 7.60 -52.49 -0.40 1.62 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.02 0.39 7.68 -51.93 -0.40 -0.01 16 37 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 41 H 0.02 0.39 7.68 -51.93 -0.40 -0.01 16 42 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 348.43 15.07 5.25 5.25 Total: -1.00 -31.58 348.43 -8.56 -40.14 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.96 Total: 0.12 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -2.35 Total: -13.47 kcal Atomic # 7 Polarization: -29.21 SS G_CDS: 0.13 Total: -29.08 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.62 Total: -19.07 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.58 -8.56 -40.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764844056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.435 kcal (2) G-P(sol) polarization free energy of solvation -31.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds