Wall clock time and date at job start Tue Mar 31 2020 09:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17390 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42903 * 109.47082 * 192.93591 * 3 2 1 5 5 C 1.42904 * 114.00243 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47152 * 179.97438 * 5 4 3 7 7 N 1.46506 * 109.47121 * 64.99937 * 6 5 4 8 8 C 1.34769 * 119.99929 * 179.97438 * 7 6 5 9 9 O 1.21284 * 120.00091 * 0.02562 * 8 7 6 10 10 C 1.50703 * 120.00156 * 179.97438 * 8 7 6 11 11 C 1.52995 * 109.47348 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47385 * 53.81101 * 11 10 8 13 13 C 1.50707 * 109.46800 * 293.80633 * 11 10 8 14 14 H 1.07996 * 119.99939 * 324.79144 * 13 11 10 15 15 C 1.37876 * 119.99516 * 144.79724 * 13 11 10 16 16 N 1.31517 * 119.99498 * 181.40280 * 15 13 11 17 17 Si 1.86799 * 120.00347 * 1.40222 * 15 13 11 18 18 H 1.48496 * 109.47059 * 267.09616 * 17 15 13 19 19 H 1.48498 * 109.46945 * 27.10055 * 17 15 13 20 20 H 1.48502 * 109.46861 * 147.09689 * 17 15 13 21 21 C 1.50699 * 109.46966 * 173.80920 * 11 10 8 22 22 C 1.38237 * 120.00135 * 66.64777 * 21 11 10 23 23 C 1.38237 * 120.00124 * 179.80917 * 22 21 11 24 24 C 1.38241 * 119.99834 * 0.39586 * 23 22 21 25 25 C 1.38239 * 119.99727 * 359.85702 * 24 23 22 26 26 C 1.38229 * 120.00171 * 359.95425 * 25 24 23 27 27 H 4.38450 * 5.44560 * 180.02562 * 4 1 2 28 28 H 1.09005 * 109.47392 * 72.93568 * 3 2 1 29 29 H 1.09000 * 109.47227 * 312.93571 * 3 2 1 30 30 H 1.09002 * 109.46905 * 59.99495 * 5 4 3 31 31 H 1.08995 * 109.46750 * 300.00079 * 5 4 3 32 32 H 1.08999 * 109.47126 * 305.00121 * 6 5 4 33 33 H 1.08996 * 109.46862 * 184.99823 * 6 5 4 34 34 H 0.97005 * 119.99423 * 0.02562 * 7 6 5 35 35 H 1.09004 * 109.46561 * 60.00018 * 10 8 7 36 36 H 1.09003 * 109.46933 * 300.01124 * 10 8 7 37 37 H 0.96996 * 119.99967 * 179.97438 * 16 15 13 38 38 H 1.07999 * 120.00352 * 359.97438 * 22 21 11 39 39 H 1.07995 * 120.00255 * 180.23001 * 23 22 21 40 40 H 1.07995 * 119.99860 * 179.82910 * 24 23 22 41 41 H 1.08003 * 119.99758 * 179.97438 * 25 24 23 42 42 H 1.08004 * 119.99873 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1217 1.3140 0.3016 5 6 4.5462 1.4248 0.3263 6 6 4.9400 2.8658 0.6567 7 7 4.5022 3.1923 2.0161 8 6 4.7432 4.4163 2.5260 9 8 5.3221 5.2478 1.8592 10 6 4.2924 4.7524 3.9242 11 6 4.6863 6.1934 4.2546 12 1 4.3013 6.8611 3.4839 13 6 6.1883 6.3034 4.3101 14 1 6.7762 5.4814 4.6910 15 6 6.8118 7.4534 3.8746 16 7 8.1240 7.5388 3.8973 17 14 5.7929 8.8901 3.2524 18 1 5.6386 8.7863 1.7792 19 1 4.4538 8.8616 3.8937 20 1 6.4763 10.1645 3.5900 21 6 4.1046 6.5795 5.5901 22 6 4.5521 5.9624 6.7433 23 6 4.0213 6.3193 7.9688 24 6 3.0373 7.2876 8.0402 25 6 2.5862 7.9010 6.8864 26 6 3.1197 7.5468 5.6614 27 1 -1.0503 -0.0004 0.0001 28 1 3.0095 -0.3008 -0.9825 29 1 3.0096 -0.6992 0.7524 30 1 4.9487 1.1530 -0.6495 31 1 4.9496 0.7544 1.0852 32 1 4.4635 3.5440 -0.0512 33 1 6.0227 2.9713 0.5885 34 1 4.0395 2.5271 2.5495 35 1 4.7682 4.0738 4.6322 36 1 3.2096 4.6473 3.9919 37 1 8.5627 8.3477 3.5906 38 1 5.3182 5.2032 6.6872 39 1 4.3735 5.8399 8.8701 40 1 2.6207 7.5645 8.9973 41 1 1.8171 8.6572 6.9422 42 1 2.7675 8.0264 4.7600 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793812435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:17 Heat of formation + Delta-G solvation = -3.690679 kcal Electronic energy + Delta-G solvation = -23490.077108 eV Core-core repulsion = 20015.846446 eV Total energy + Delta-G solvation = -3474.230662 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.26445 -38.56048 -38.04930 -34.70934 -33.91331 -33.26093 -31.63271 -30.18994 -29.97919 -28.61730 -26.97980 -25.71055 -22.96701 -22.21093 -21.77986 -20.21301 -19.16623 -18.71113 -17.07435 -16.88349 -16.59288 -16.39345 -15.92517 -15.32849 -14.90789 -14.65065 -14.44232 -14.13125 -13.75287 -13.41381 -13.01083 -12.77143 -12.67744 -12.49823 -12.37704 -12.23065 -11.85606 -11.74560 -11.48377 -10.98170 -10.82071 -10.78003 -10.70604 -10.49232 -10.30868 -9.87799 -9.82791 -9.56862 -9.11343 -8.88740 -8.54329 -8.37475 -8.16642 -7.77595 -5.93953 -3.91112 2.13216 2.18123 2.21578 2.51185 3.47369 3.51925 3.54214 3.55255 3.60957 3.74236 4.23573 4.56089 4.62948 4.80031 4.95799 4.96444 5.08691 5.18375 5.36057 5.55012 5.59263 5.60583 5.66986 5.72520 5.75803 5.99881 6.02083 6.07892 6.15512 6.28539 6.37317 6.66398 6.73323 6.80524 6.87485 6.95213 7.07077 7.17600 7.27345 7.31015 7.62172 7.77173 7.87060 8.11212 8.57394 9.04091 9.08427 9.71345 11.19130 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.013109 B = 0.003813 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.382535 B = 7341.458540 C = 8644.616626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.193 4.193 3 C 0.171 3.829 4 O -0.378 6.378 5 C 0.051 3.949 6 C 0.125 3.875 7 N -0.744 5.744 8 C 0.514 3.486 9 O -0.504 6.504 10 C -0.116 4.116 11 C 0.056 3.944 12 H 0.050 0.950 13 C -0.487 4.487 14 H 0.070 0.930 15 C 0.086 3.914 16 N -0.901 5.901 17 Si 0.870 3.130 18 H -0.276 1.276 19 H -0.255 1.255 20 H -0.295 1.295 21 C -0.039 4.039 22 C -0.100 4.100 23 C -0.129 4.129 24 C -0.150 4.150 25 C -0.128 4.128 26 C -0.135 4.135 27 H 0.221 0.779 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.396 0.604 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.261 0.739 38 H 0.120 0.880 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.351 -14.286 -2.935 19.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.193 4.193 3 C 0.096 3.904 4 O -0.298 6.298 5 C -0.025 4.025 6 C 0.001 3.999 7 N -0.400 5.400 8 C 0.301 3.699 9 O -0.376 6.376 10 C -0.156 4.156 11 C 0.037 3.963 12 H 0.068 0.932 13 C -0.524 4.524 14 H 0.088 0.912 15 C -0.117 4.117 16 N -0.538 5.538 17 Si 0.698 3.302 18 H -0.202 1.202 19 H -0.180 1.180 20 H -0.222 1.222 21 C -0.040 4.040 22 C -0.118 4.118 23 C -0.147 4.147 24 C -0.168 4.168 25 C -0.146 4.146 26 C -0.153 4.153 27 H 0.238 0.762 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.229 0.771 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.138 0.862 39 H 0.128 0.872 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.843 -13.364 -3.453 18.188 hybrid contribution -0.537 0.331 -0.142 0.647 sum -12.381 -13.033 -3.595 18.332 Atomic orbital electron populations 1.24991 0.95935 0.97708 1.00614 1.22557 0.93958 1.02070 1.00764 1.19070 0.84769 0.85929 1.00646 1.88039 1.21570 1.28226 1.91967 1.22873 0.80681 0.97842 1.01119 1.21225 1.00102 0.93237 0.85375 1.46047 1.62621 1.15721 1.15597 1.20809 0.78824 0.80932 0.89367 1.90742 1.38568 1.47460 1.60812 1.21650 0.99852 1.01121 0.93024 1.18132 0.97547 0.91142 0.89516 0.93221 1.20597 0.87520 1.02323 1.41979 0.91157 1.24876 0.94517 0.98196 0.94066 1.69889 1.08270 1.28041 1.47645 0.86957 0.81503 0.81811 0.79947 1.20224 1.17959 1.22192 1.20770 0.91521 0.93806 0.97889 1.20981 0.98857 1.00382 0.91615 1.21055 0.97679 0.98447 0.97486 1.20859 0.99484 0.98952 0.97480 1.20961 1.00456 1.00117 0.93043 1.21155 0.97830 0.99140 0.97185 0.76188 0.90871 0.90769 0.91564 0.92179 0.91113 0.89925 0.77098 0.89831 0.91375 0.92933 0.86192 0.87219 0.87472 0.87425 0.87056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 19.25 29.55 0.57 -0.97 16 2 C -0.19 -1.96 13.73 -37.12 -0.51 -2.47 16 3 C 0.17 1.45 6.41 34.37 0.22 1.67 16 4 O -0.38 -4.21 10.25 -35.23 -0.36 -4.57 16 5 C 0.05 0.48 6.07 37.16 0.23 0.71 16 6 C 0.12 1.66 6.06 -4.04 -0.02 1.64 16 7 N -0.74 -11.28 5.50 -60.29 -0.33 -11.61 16 8 C 0.51 10.29 7.58 -10.99 -0.08 10.21 16 9 O -0.50 -12.62 15.02 5.55 0.08 -12.54 16 10 C -0.12 -2.21 4.96 -27.88 -0.14 -2.35 16 11 C 0.06 1.30 1.17 -92.92 -0.11 1.19 16 12 H 0.05 1.23 4.94 -51.93 -0.26 0.98 16 13 C -0.49 -13.48 6.88 -34.44 -0.24 -13.72 16 14 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 15 C 0.09 2.54 5.47 -17.82 -0.10 2.44 16 16 N -0.90 -28.39 13.96 55.43 0.77 -27.61 16 17 Si 0.87 22.94 27.00 -169.99 -4.59 18.35 16 18 H -0.28 -7.47 7.11 56.52 0.40 -7.07 16 19 H -0.26 -6.22 4.72 56.52 0.27 -5.95 16 20 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 21 C -0.04 -0.83 4.65 -104.62 -0.49 -1.32 16 22 C -0.10 -1.98 8.93 -39.58 -0.35 -2.33 16 23 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 24 C -0.15 -2.47 10.05 -39.58 -0.40 -2.87 16 25 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 26 C -0.13 -2.69 8.70 -39.59 -0.34 -3.03 16 27 H 0.22 1.12 7.80 -54.07 -0.42 0.70 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.40 4.92 8.47 -40.82 -0.35 4.57 16 35 H 0.08 1.48 8.05 -51.93 -0.42 1.06 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 38 H 0.12 2.35 7.87 -52.49 -0.41 1.93 16 39 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 40 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 41 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 42 H 0.11 2.18 7.12 -52.48 -0.37 1.80 16 LS Contribution 362.47 15.07 5.46 5.46 Total: -1.00 -35.89 362.47 -7.67 -43.57 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.15 Total: 5.41 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -2.56 Total: -16.46 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.44 Total: -39.22 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.28 Total: -17.11 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.59 Total: 18.35 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.89 -7.67 -43.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793812435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.876 kcal (2) G-P(sol) polarization free energy of solvation -35.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds