Wall clock time and date at job start Tue Mar 31 2020 09:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17390 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42903 * 109.47082 * 192.93591 * 3 2 1 5 5 C 1.42904 * 114.00243 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47152 * 179.97438 * 5 4 3 7 7 N 1.46506 * 109.47121 * 64.99937 * 6 5 4 8 8 C 1.34769 * 119.99929 * 179.97438 * 7 6 5 9 9 O 1.21284 * 120.00091 * 0.02562 * 8 7 6 10 10 C 1.50703 * 120.00156 * 179.97438 * 8 7 6 11 11 C 1.52995 * 109.47348 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47385 * 53.81101 * 11 10 8 13 13 C 1.50707 * 109.46800 * 293.80633 * 11 10 8 14 14 H 1.07996 * 119.99939 * 324.79144 * 13 11 10 15 15 C 1.37876 * 119.99516 * 144.79724 * 13 11 10 16 16 N 1.31517 * 119.99498 * 181.40280 * 15 13 11 17 17 Si 1.86799 * 120.00347 * 1.40222 * 15 13 11 18 18 H 1.48496 * 109.47059 * 267.09616 * 17 15 13 19 19 H 1.48498 * 109.46945 * 27.10055 * 17 15 13 20 20 H 1.48502 * 109.46861 * 147.09689 * 17 15 13 21 21 C 1.50699 * 109.46966 * 173.80920 * 11 10 8 22 22 C 1.38237 * 120.00135 * 66.64777 * 21 11 10 23 23 C 1.38237 * 120.00124 * 179.80917 * 22 21 11 24 24 C 1.38241 * 119.99834 * 0.39586 * 23 22 21 25 25 C 1.38239 * 119.99727 * 359.85702 * 24 23 22 26 26 C 1.38229 * 120.00171 * 359.95425 * 25 24 23 27 27 H 4.38450 * 5.44560 * 180.02562 * 4 1 2 28 28 H 1.09005 * 109.47392 * 72.93568 * 3 2 1 29 29 H 1.09000 * 109.47227 * 312.93571 * 3 2 1 30 30 H 1.09002 * 109.46905 * 59.99495 * 5 4 3 31 31 H 1.08995 * 109.46750 * 300.00079 * 5 4 3 32 32 H 1.08999 * 109.47126 * 305.00121 * 6 5 4 33 33 H 1.08996 * 109.46862 * 184.99823 * 6 5 4 34 34 H 0.97005 * 119.99423 * 0.02562 * 7 6 5 35 35 H 1.09004 * 109.46561 * 60.00018 * 10 8 7 36 36 H 1.09003 * 109.46933 * 300.01124 * 10 8 7 37 37 H 0.96996 * 119.99967 * 179.97438 * 16 15 13 38 38 H 1.07999 * 120.00352 * 359.97438 * 22 21 11 39 39 H 1.07995 * 120.00255 * 180.23001 * 23 22 21 40 40 H 1.07995 * 119.99860 * 179.82910 * 24 23 22 41 41 H 1.08003 * 119.99758 * 179.97438 * 25 24 23 42 42 H 1.08004 * 119.99873 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1217 1.3140 0.3016 5 6 4.5462 1.4248 0.3263 6 6 4.9400 2.8658 0.6567 7 7 4.5022 3.1923 2.0161 8 6 4.7432 4.4163 2.5260 9 8 5.3221 5.2478 1.8592 10 6 4.2924 4.7524 3.9242 11 6 4.6863 6.1934 4.2546 12 1 4.3013 6.8611 3.4839 13 6 6.1883 6.3034 4.3101 14 1 6.7762 5.4814 4.6910 15 6 6.8118 7.4534 3.8746 16 7 8.1240 7.5388 3.8973 17 14 5.7929 8.8901 3.2524 18 1 5.6386 8.7863 1.7792 19 1 4.4538 8.8616 3.8937 20 1 6.4763 10.1645 3.5900 21 6 4.1046 6.5795 5.5901 22 6 4.5521 5.9624 6.7433 23 6 4.0213 6.3193 7.9688 24 6 3.0373 7.2876 8.0402 25 6 2.5862 7.9010 6.8864 26 6 3.1197 7.5468 5.6614 27 1 -1.0503 -0.0004 0.0001 28 1 3.0095 -0.3008 -0.9825 29 1 3.0096 -0.6992 0.7524 30 1 4.9487 1.1530 -0.6495 31 1 4.9496 0.7544 1.0852 32 1 4.4635 3.5440 -0.0512 33 1 6.0227 2.9713 0.5885 34 1 4.0395 2.5271 2.5495 35 1 4.7682 4.0738 4.6322 36 1 3.2096 4.6473 3.9919 37 1 8.5627 8.3477 3.5906 38 1 5.3182 5.2032 6.6872 39 1 4.3735 5.8399 8.8701 40 1 2.6207 7.5645 8.9973 41 1 1.8171 8.6572 6.9422 42 1 2.7675 8.0264 4.7600 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793812435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:16 Heat of formation + Delta-G solvation = -28.307900 kcal Electronic energy + Delta-G solvation = -23491.144591 eV Core-core repulsion = 20015.846446 eV Total energy + Delta-G solvation = -3475.298145 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.76858 -39.85208 -39.07977 -36.11965 -35.51724 -34.07604 -33.69897 -31.59909 -31.21242 -29.93745 -27.96250 -27.31702 -24.49664 -23.44645 -23.16231 -21.70653 -20.78758 -19.38042 -18.99537 -18.06352 -17.83521 -17.33975 -17.23660 -16.52054 -16.37026 -16.08585 -15.70114 -15.59562 -15.33680 -14.84703 -14.46080 -14.31597 -14.10114 -13.94097 -13.62502 -13.39362 -13.28256 -13.25819 -12.86454 -12.64268 -12.46744 -12.04071 -11.88450 -11.77286 -11.52131 -11.49052 -11.47183 -11.03525 -10.72017 -10.56991 -10.44537 -9.92807 -9.59961 -9.28451 -8.20844 -6.17350 0.69821 0.74746 1.32584 1.37915 1.43167 1.52407 1.84320 1.95887 2.41332 2.43122 2.93654 3.10181 3.25660 3.59600 3.99476 4.13490 4.16473 4.21869 4.32244 4.33562 4.34939 4.45911 4.47955 4.51013 4.54264 4.64941 4.72273 4.85814 4.87822 4.91528 5.04883 5.12586 5.21784 5.39720 5.42621 5.62481 5.70878 5.78307 5.84485 6.04848 6.14465 6.34960 6.38289 6.62090 6.77305 6.81880 7.47029 7.57184 8.96187 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.013109 B = 0.003813 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.382535 B = 7341.458540 C = 8644.616626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.236 4.236 3 C 0.167 3.833 4 O -0.406 6.406 5 C 0.062 3.938 6 C 0.119 3.881 7 N -0.724 5.724 8 C 0.509 3.491 9 O -0.565 6.565 10 C -0.112 4.112 11 C 0.057 3.943 12 H 0.031 0.969 13 C -0.464 4.464 14 H 0.036 0.964 15 C 0.024 3.976 16 N -0.954 5.954 17 Si 0.918 3.082 18 H -0.292 1.292 19 H -0.225 1.225 20 H -0.296 1.296 21 C -0.063 4.063 22 C -0.118 4.118 23 C -0.126 4.126 24 C -0.140 4.140 25 C -0.125 4.125 26 C -0.152 4.152 27 H 0.249 0.751 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.412 0.588 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.258 0.742 38 H 0.110 0.890 39 H 0.139 0.861 40 H 0.147 0.853 41 H 0.140 0.860 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.364 -15.405 -1.313 21.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.236 4.236 3 C 0.092 3.908 4 O -0.326 6.326 5 C -0.014 4.014 6 C -0.005 4.005 7 N -0.379 5.379 8 C 0.296 3.704 9 O -0.442 6.442 10 C -0.152 4.152 11 C 0.038 3.962 12 H 0.049 0.951 13 C -0.502 4.502 14 H 0.054 0.946 15 C -0.172 4.172 16 N -0.596 5.596 17 Si 0.744 3.256 18 H -0.219 1.219 19 H -0.148 1.148 20 H -0.223 1.223 21 C -0.064 4.064 22 C -0.136 4.136 23 C -0.144 4.144 24 C -0.158 4.158 25 C -0.143 4.143 26 C -0.171 4.171 27 H 0.266 0.734 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.248 0.752 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.066 0.934 38 H 0.128 0.872 39 H 0.157 0.843 40 H 0.164 0.836 41 H 0.157 0.843 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.919 -14.552 -1.810 20.919 hybrid contribution 0.276 0.522 -0.575 0.825 sum -14.643 -14.030 -2.385 20.419 Atomic orbital electron populations 1.25853 0.96968 0.96432 0.99627 1.23252 0.95187 1.03284 1.01851 1.19314 0.84162 0.84995 1.02351 1.87975 1.22174 1.30114 1.92368 1.22795 0.80421 0.94953 1.03213 1.21352 0.99548 0.95870 0.83719 1.45858 1.61144 1.14428 1.16424 1.21053 0.78124 0.81711 0.89509 1.90721 1.41626 1.49574 1.62305 1.21582 1.01942 0.98893 0.92789 1.18007 0.94326 0.93302 0.90602 0.95122 1.20818 0.90093 1.00263 1.38977 0.94551 1.25590 0.95250 1.01014 0.95357 1.70024 1.09934 1.28767 1.50842 0.86190 0.81768 0.79058 0.78537 1.21863 1.14755 1.22300 1.20495 0.93513 0.95589 0.96808 1.21020 0.99290 1.00803 0.92498 1.21402 0.97236 0.98344 0.97387 1.21338 0.98178 0.97365 0.98893 1.21332 1.00508 1.00300 0.92155 1.21259 0.98223 0.99046 0.98527 0.73447 0.89024 0.88781 0.88984 0.89983 0.92942 0.90745 0.75158 0.88528 0.88112 0.93364 0.87220 0.84293 0.83571 0.84252 0.87320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 19.25 74.32 1.43 -1.30 16 2 C -0.24 -4.44 13.73 31.13 0.43 -4.01 16 3 C 0.17 2.50 6.41 70.18 0.45 2.95 16 4 O -0.41 -8.36 10.25 -148.98 -1.53 -9.89 16 5 C 0.06 1.05 6.07 71.98 0.44 1.49 16 6 C 0.12 3.17 6.06 86.38 0.52 3.69 16 7 N -0.72 -21.66 5.50 -463.06 -2.55 -24.21 16 8 C 0.51 20.71 7.58 87.66 0.66 21.38 16 9 O -0.57 -29.56 15.02 -3.04 -0.05 -29.60 16 10 C -0.11 -4.25 4.96 29.85 0.15 -4.10 16 11 C 0.06 2.67 1.17 -12.29 -0.01 2.66 16 12 H 0.03 1.54 4.94 -2.39 -0.01 1.53 16 13 C -0.46 -26.66 6.88 25.60 0.18 -26.49 16 14 H 0.04 2.28 8.06 -2.91 -0.02 2.25 16 15 C 0.02 1.48 5.47 84.65 0.46 1.94 16 16 N -0.95 -63.17 13.96 21.45 0.30 -62.87 16 17 Si 0.92 48.86 27.00 68.60 1.85 50.72 16 18 H -0.29 -16.11 7.11 99.48 0.71 -15.41 16 19 H -0.22 -10.70 4.72 99.48 0.47 -10.23 16 20 H -0.30 -15.60 7.11 99.48 0.71 -14.89 16 21 C -0.06 -2.64 4.65 -19.87 -0.09 -2.73 16 22 C -0.12 -4.51 8.93 22.27 0.20 -4.31 16 23 C -0.13 -3.92 10.05 22.27 0.22 -3.69 16 24 C -0.14 -3.95 10.05 22.27 0.22 -3.73 16 25 C -0.13 -3.85 10.05 22.27 0.22 -3.62 16 26 C -0.15 -5.74 8.70 22.27 0.19 -5.55 16 27 H 0.25 1.94 7.80 -4.40 -0.03 1.90 16 28 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.41 9.61 8.47 -92.70 -0.79 8.82 16 35 H 0.10 3.38 8.05 -2.38 -0.02 3.36 16 36 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 37 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 38 H 0.11 4.30 7.87 -2.91 -0.02 4.28 16 39 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 40 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 41 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 42 H 0.11 4.06 7.12 -2.91 -0.02 4.04 16 Total: -1.00 -83.12 362.47 3.70 -79.42 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -0.01 Total: 21.86 kcal Atomic # 6 Polarization: -31.11 SS G_CDS: 5.68 Total: -25.43 kcal Atomic # 7 Polarization: -84.83 SS G_CDS: -2.25 Total: -87.08 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -1.57 Total: -39.49 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 1.85 Total: 50.72 kcal Total: -83.12 3.70 -79.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793812435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.115 kcal (2) G-P(sol) polarization free energy of solvation -83.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds