Wall clock time and date at job start Tue Mar 31 2020 07:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46741 * 2 1 4 4 C 1.47200 * 109.47531 * 240.00045 * 2 1 3 5 5 N 2.60793 * 109.47421 * 239.99819 * 2 1 3 6 6 C 1.52997 * 109.47191 * 119.99649 * 2 1 3 7 7 O 1.45203 * 109.46980 * 300.00761 * 6 2 1 8 8 C 1.34236 * 117.00110 * 180.02562 * 7 6 2 9 9 O 1.20825 * 119.99323 * 359.97438 * 8 7 6 10 10 C 1.50688 * 120.00296 * 180.02562 * 8 7 6 11 11 C 1.52999 * 109.47354 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47305 * 53.80117 * 11 10 8 13 13 C 1.50708 * 109.46885 * 293.80185 * 11 10 8 14 14 H 1.08000 * 119.99624 * 324.79477 * 13 11 10 15 15 C 1.37875 * 120.00085 * 144.79205 * 13 11 10 16 16 N 1.31509 * 120.00148 * 181.40791 * 15 13 11 17 17 Si 1.86808 * 119.99819 * 1.40439 * 15 13 11 18 18 H 1.48496 * 109.47120 * 267.09715 * 17 15 13 19 19 H 1.48495 * 109.46920 * 27.09863 * 17 15 13 20 20 H 1.48502 * 109.46719 * 147.09838 * 17 15 13 21 21 C 1.50699 * 109.47482 * 173.80503 * 11 10 8 22 22 C 1.38240 * 119.99980 * 66.64160 * 21 11 10 23 23 C 1.38238 * 119.99579 * 179.81083 * 22 21 11 24 24 C 1.38232 * 120.00406 * 0.39891 * 23 22 21 25 25 C 1.38237 * 119.99864 * 359.85742 * 24 23 22 26 26 C 1.38230 * 119.99847 * 246.91995 * 21 11 10 27 27 H 1.08999 * 109.47708 * 299.99845 * 1 2 3 28 28 H 1.09004 * 109.47302 * 60.00375 * 1 2 3 29 29 H 1.08997 * 109.46974 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46892 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47343 * 299.99537 * 3 2 1 32 32 H 1.08998 * 109.47322 * 59.99976 * 3 2 1 33 33 H 1.08993 * 109.47566 * 180.02562 * 6 2 1 34 34 H 1.09005 * 109.46821 * 59.99949 * 6 2 1 35 35 H 1.08995 * 109.47706 * 59.99179 * 10 8 7 36 36 H 1.09010 * 109.47129 * 299.99285 * 10 8 7 37 37 H 0.97000 * 120.00116 * 180.02562 * 16 15 13 38 38 H 1.08000 * 120.00143 * 0.02562 * 22 21 11 39 39 H 1.08003 * 119.99602 * 180.23841 * 23 22 21 40 40 H 1.07995 * 120.00043 * 179.83073 * 24 23 22 41 41 H 1.07998 * 120.00385 * 179.97438 * 25 24 23 42 42 H 1.07996 * 120.00708 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0208 -0.6939 -1.2019 5 7 2.3994 -1.2294 -2.1293 6 6 2.0400 -0.7212 1.2493 7 8 1.5558 -0.0367 2.4348 8 6 1.9169 -0.5463 3.6230 9 8 2.6141 -1.5320 3.6707 10 6 1.4519 0.1101 4.8971 11 6 1.9991 -0.6633 6.0985 12 1 3.0813 -0.7568 6.0082 13 6 1.3778 -2.0359 6.1375 14 1 0.3525 -2.1734 5.8275 15 6 2.1184 -3.1158 6.5690 16 7 1.5851 -4.3179 6.5769 17 14 3.8795 -2.8715 7.1423 18 1 4.8057 -3.0863 6.0017 19 1 4.0441 -1.4895 7.6602 20 1 4.1883 -3.8444 8.2208 21 6 1.6629 0.0764 7.3677 22 6 0.3456 0.1973 7.7691 23 6 0.0377 0.8725 8.9353 24 6 1.0463 1.4339 9.6959 25 6 2.3631 1.3175 9.2918 26 6 2.6714 0.6390 8.1275 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 3.1299 -0.7208 1.2495 34 1 1.6766 -1.7489 1.2493 35 1 0.3625 0.1086 4.9301 36 1 1.8150 1.1374 4.9301 37 1 2.1060 -5.0776 6.8808 38 1 -0.4426 -0.2387 7.1733 39 1 -0.9912 0.9637 9.2509 40 1 0.8054 1.9637 10.6056 41 1 3.1511 1.7564 9.8858 42 1 3.7002 0.5481 7.8119 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796829749.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:12 Heat of formation + Delta-G solvation = -47.069330 kcal Electronic energy + Delta-G solvation = -24004.229971 eV Core-core repulsion = 20528.118270 eV Total energy + Delta-G solvation = -3476.111702 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.10682 -38.71706 -38.04780 -36.11565 -34.53728 -34.17521 -31.77862 -30.26050 -29.34320 -27.59407 -27.25265 -25.90985 -23.20539 -22.45775 -21.90858 -20.61126 -19.28735 -17.46131 -17.08737 -16.77223 -16.17693 -16.04476 -15.78075 -14.74680 -14.62017 -14.29976 -14.15135 -13.89882 -13.70257 -13.33976 -13.02959 -12.83537 -12.75955 -12.52017 -12.41319 -12.31617 -12.17960 -11.94444 -11.87138 -11.71767 -11.32593 -11.17219 -11.03690 -10.82817 -10.59599 -10.45162 -10.28138 -10.01455 -9.72353 -9.64569 -9.19596 -8.53566 -8.25014 -7.89322 -6.07134 -4.06737 2.04461 2.07815 2.36925 2.55589 2.97410 3.07525 3.36873 3.41264 3.44122 3.79461 4.44551 4.46452 4.51385 4.52179 4.68325 5.22655 5.33597 5.38312 5.43914 5.47134 5.47668 5.51250 5.60438 5.63367 5.63794 5.71563 5.83602 5.88001 5.95030 6.01517 6.02327 6.19033 6.24943 6.44241 6.61674 6.74438 6.89595 6.94271 7.09865 7.21112 7.31252 7.47945 7.64158 7.74448 8.41627 8.49824 8.91084 9.56668 11.05353 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.015545 B = 0.004142 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.839675 B = 6758.379017 C = 7759.627632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.037 3.963 3 C -0.140 4.140 4 C 0.219 3.781 5 N -0.427 5.427 6 C 0.078 3.922 7 O -0.363 6.363 8 C 0.460 3.540 9 O -0.469 6.469 10 C -0.087 4.087 11 C 0.052 3.948 12 H 0.051 0.949 13 C -0.498 4.498 14 H 0.074 0.926 15 C 0.087 3.913 16 N -0.895 5.895 17 Si 0.867 3.133 18 H -0.276 1.276 19 H -0.254 1.254 20 H -0.293 1.293 21 C -0.041 4.041 22 C -0.099 4.099 23 C -0.128 4.128 24 C -0.147 4.147 25 C -0.128 4.128 26 C -0.134 4.134 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.263 0.737 38 H 0.122 0.878 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.028 14.646 -5.222 15.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.033 3.967 3 C -0.198 4.198 4 C -0.100 4.100 5 N -0.101 5.101 6 C 0.002 3.998 7 O -0.282 6.282 8 C 0.301 3.699 9 O -0.352 6.352 10 C -0.125 4.125 11 C 0.033 3.967 12 H 0.070 0.930 13 C -0.535 4.535 14 H 0.092 0.908 15 C -0.116 4.116 16 N -0.532 5.532 17 Si 0.695 3.305 18 H -0.202 1.202 19 H -0.178 1.178 20 H -0.219 1.219 21 C -0.042 4.042 22 C -0.117 4.117 23 C -0.146 4.146 24 C -0.165 4.165 25 C -0.146 4.146 26 C -0.152 4.152 27 H 0.108 0.892 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.140 0.860 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.184 13.285 -6.606 14.884 hybrid contribution 0.930 -0.233 0.725 1.202 sum -0.254 13.052 -5.881 14.318 Atomic orbital electron populations 1.21886 0.90391 1.03650 1.03945 1.18176 0.97909 0.95258 0.85343 1.21882 1.01772 0.92159 1.03978 1.28826 0.93265 0.93449 0.94441 1.81217 1.08676 1.08661 1.11575 1.22699 0.99468 0.95936 0.81673 1.86438 1.71095 1.56001 1.14622 1.23935 0.78395 0.83321 0.84287 1.90731 1.33974 1.23718 1.86733 1.21473 1.03158 0.98859 0.89020 1.18209 0.97861 0.94578 0.86043 0.93050 1.20626 0.99966 0.88383 1.44531 0.90829 1.24891 0.97696 0.94896 0.94082 1.69874 1.37360 0.99093 1.46876 0.86995 0.86167 0.78837 0.78508 1.20202 1.17798 1.21946 1.20630 0.92765 0.92384 0.98407 1.20994 0.96781 0.97640 0.96274 1.21067 0.98482 0.99263 0.95773 1.20883 0.93231 1.02412 0.99990 1.20970 0.96107 1.00422 0.97063 1.21143 0.99046 0.98986 0.95990 0.89162 0.91664 0.91569 0.91781 0.91623 0.89225 0.90706 0.90303 0.88416 0.89959 0.92713 0.86037 0.87104 0.87392 0.87350 0.87005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.29 37.16 0.31 -0.86 16 2 C 0.04 0.35 0.78 -157.30 -0.12 0.23 16 3 C -0.14 -1.07 8.29 37.16 0.31 -0.76 16 4 C 0.22 2.57 13.86 -20.76 -0.29 2.28 16 5 N -0.43 -6.06 18.54 42.15 0.78 -5.28 16 6 C 0.08 0.99 4.28 37.16 0.16 1.15 16 7 O -0.36 -5.08 8.88 -39.28 -0.35 -5.43 16 8 C 0.46 8.27 7.71 36.00 0.28 8.55 16 9 O -0.47 -10.54 14.77 -18.75 -0.28 -10.82 16 10 C -0.09 -1.48 5.08 -27.89 -0.14 -1.62 16 11 C 0.05 1.10 1.17 -92.92 -0.11 1.00 16 12 H 0.05 1.15 4.94 -51.93 -0.26 0.90 16 13 C -0.50 -12.89 6.88 -34.44 -0.24 -13.12 16 14 H 0.07 2.05 8.06 -52.49 -0.42 1.63 16 15 C 0.09 2.46 5.47 -17.82 -0.10 2.36 16 16 N -0.90 -27.05 13.96 55.43 0.77 -26.27 16 17 Si 0.87 21.62 27.00 -169.99 -4.59 17.03 16 18 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.25 -5.77 4.72 56.52 0.27 -5.51 16 20 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 21 C -0.04 -0.81 4.65 -104.62 -0.49 -1.29 16 22 C -0.10 -1.80 8.93 -39.58 -0.35 -2.15 16 23 C -0.13 -2.04 10.05 -39.58 -0.40 -2.44 16 24 C -0.15 -2.25 10.05 -39.58 -0.40 -2.65 16 25 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16 26 C -0.13 -2.44 8.69 -39.58 -0.34 -2.79 16 27 H 0.09 0.72 7.68 -51.93 -0.40 0.32 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.65 7.68 -51.93 -0.40 0.25 16 33 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 34 H 0.08 1.09 8.13 -51.93 -0.42 0.67 16 35 H 0.10 1.54 8.05 -51.93 -0.42 1.12 16 36 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16 37 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.12 2.18 7.87 -52.49 -0.41 1.77 16 39 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 40 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.11 1.99 7.12 -52.49 -0.37 1.62 16 LS Contribution 357.16 15.07 5.38 5.38 Total: -1.00 -32.28 357.16 -6.78 -39.06 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.18 Total: 0.90 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -2.32 Total: -14.57 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 1.55 Total: -31.55 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.63 Total: -16.24 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.59 Total: 17.03 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.28 -6.78 -39.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796829749.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.012 kcal (2) G-P(sol) polarization free energy of solvation -32.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds