Wall clock time and date at job start Tue Mar 31 2020 07:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46741 * 2 1 4 4 C 1.47200 * 109.47531 * 240.00045 * 2 1 3 5 5 N 2.60793 * 109.47421 * 239.99819 * 2 1 3 6 6 C 1.52997 * 109.47191 * 119.99649 * 2 1 3 7 7 O 1.45203 * 109.46980 * 300.00761 * 6 2 1 8 8 C 1.34236 * 117.00110 * 180.02562 * 7 6 2 9 9 O 1.20825 * 119.99323 * 359.97438 * 8 7 6 10 10 C 1.50688 * 120.00296 * 180.02562 * 8 7 6 11 11 C 1.52999 * 109.47354 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47305 * 53.80117 * 11 10 8 13 13 C 1.50708 * 109.46885 * 293.80185 * 11 10 8 14 14 H 1.08000 * 119.99624 * 324.79477 * 13 11 10 15 15 C 1.37875 * 120.00085 * 144.79205 * 13 11 10 16 16 N 1.31509 * 120.00148 * 181.40791 * 15 13 11 17 17 Si 1.86808 * 119.99819 * 1.40439 * 15 13 11 18 18 H 1.48496 * 109.47120 * 267.09715 * 17 15 13 19 19 H 1.48495 * 109.46920 * 27.09863 * 17 15 13 20 20 H 1.48502 * 109.46719 * 147.09838 * 17 15 13 21 21 C 1.50699 * 109.47482 * 173.80503 * 11 10 8 22 22 C 1.38240 * 119.99980 * 66.64160 * 21 11 10 23 23 C 1.38238 * 119.99579 * 179.81083 * 22 21 11 24 24 C 1.38232 * 120.00406 * 0.39891 * 23 22 21 25 25 C 1.38237 * 119.99864 * 359.85742 * 24 23 22 26 26 C 1.38230 * 119.99847 * 246.91995 * 21 11 10 27 27 H 1.08999 * 109.47708 * 299.99845 * 1 2 3 28 28 H 1.09004 * 109.47302 * 60.00375 * 1 2 3 29 29 H 1.08997 * 109.46974 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46892 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47343 * 299.99537 * 3 2 1 32 32 H 1.08998 * 109.47322 * 59.99976 * 3 2 1 33 33 H 1.08993 * 109.47566 * 180.02562 * 6 2 1 34 34 H 1.09005 * 109.46821 * 59.99949 * 6 2 1 35 35 H 1.08995 * 109.47706 * 59.99179 * 10 8 7 36 36 H 1.09010 * 109.47129 * 299.99285 * 10 8 7 37 37 H 0.97000 * 120.00116 * 180.02562 * 16 15 13 38 38 H 1.08000 * 120.00143 * 0.02562 * 22 21 11 39 39 H 1.08003 * 119.99602 * 180.23841 * 23 22 21 40 40 H 1.07995 * 120.00043 * 179.83073 * 24 23 22 41 41 H 1.07998 * 120.00385 * 179.97438 * 25 24 23 42 42 H 1.07996 * 120.00708 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0208 -0.6939 -1.2019 5 7 2.3994 -1.2294 -2.1293 6 6 2.0400 -0.7212 1.2493 7 8 1.5558 -0.0367 2.4348 8 6 1.9169 -0.5463 3.6230 9 8 2.6141 -1.5320 3.6707 10 6 1.4519 0.1101 4.8971 11 6 1.9991 -0.6633 6.0985 12 1 3.0813 -0.7568 6.0082 13 6 1.3778 -2.0359 6.1375 14 1 0.3525 -2.1734 5.8275 15 6 2.1184 -3.1158 6.5690 16 7 1.5851 -4.3179 6.5769 17 14 3.8795 -2.8715 7.1423 18 1 4.8057 -3.0863 6.0017 19 1 4.0441 -1.4895 7.6602 20 1 4.1883 -3.8444 8.2208 21 6 1.6629 0.0764 7.3677 22 6 0.3456 0.1973 7.7691 23 6 0.0377 0.8725 8.9353 24 6 1.0463 1.4339 9.6959 25 6 2.3631 1.3175 9.2918 26 6 2.6714 0.6390 8.1275 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 3.1299 -0.7208 1.2495 34 1 1.6766 -1.7489 1.2493 35 1 0.3625 0.1086 4.9301 36 1 1.8150 1.1374 4.9301 37 1 2.1060 -5.0776 6.8808 38 1 -0.4426 -0.2387 7.1733 39 1 -0.9912 0.9637 9.2509 40 1 0.8054 1.9637 10.6056 41 1 3.1511 1.7564 9.8858 42 1 3.7002 0.5481 7.8119 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796829749.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:11 Heat of formation + Delta-G solvation = -64.372749 kcal Electronic energy + Delta-G solvation = -24004.980304 eV Core-core repulsion = 20528.118270 eV Total energy + Delta-G solvation = -3476.862034 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.46762 -40.02950 -39.13164 -37.39940 -35.88434 -35.49159 -33.73804 -31.55459 -30.67765 -28.56328 -28.24010 -27.40395 -24.64172 -23.62586 -23.21156 -21.92487 -20.80608 -19.02538 -18.67884 -17.93480 -17.47823 -17.35753 -16.96488 -16.35369 -15.85793 -15.54441 -15.41315 -15.24585 -14.78176 -14.59377 -14.51186 -14.11278 -13.96601 -13.86948 -13.74557 -13.62628 -13.24231 -13.11588 -12.89865 -12.80462 -12.64353 -12.52273 -12.11687 -12.09821 -11.92041 -11.86362 -11.77960 -11.52371 -11.49156 -11.22614 -10.98525 -10.62572 -9.55852 -9.27386 -8.21698 -6.20220 0.73183 0.76859 1.29572 1.35222 1.38401 1.43977 1.52656 1.60091 1.94219 2.41970 2.81760 3.11528 3.26372 3.53739 3.67299 3.91785 4.09574 4.16191 4.31210 4.36049 4.39772 4.42709 4.47775 4.53763 4.68887 4.84238 4.84739 4.89801 4.91016 4.94404 5.00759 5.05089 5.21429 5.31189 5.38136 5.40196 5.44662 5.57998 5.67853 5.82501 5.87336 6.05681 6.34977 6.35877 6.40479 6.81402 7.07319 7.45316 8.94653 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.015545 B = 0.004142 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.839675 B = 6758.379017 C = 7759.627632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.047 3.953 3 C -0.138 4.138 4 C 0.240 3.760 5 N -0.470 5.470 6 C 0.073 3.927 7 O -0.340 6.340 8 C 0.464 3.536 9 O -0.522 6.522 10 C -0.084 4.084 11 C 0.052 3.948 12 H 0.038 0.962 13 C -0.472 4.472 14 H 0.041 0.959 15 C 0.025 3.975 16 N -0.952 5.952 17 Si 0.913 3.087 18 H -0.290 1.290 19 H -0.219 1.219 20 H -0.300 1.300 21 C -0.063 4.063 22 C -0.116 4.116 23 C -0.127 4.127 24 C -0.140 4.140 25 C -0.126 4.126 26 C -0.149 4.149 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.111 0.889 36 H 0.123 0.877 37 H 0.258 0.742 38 H 0.113 0.887 39 H 0.138 0.862 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.288 18.570 -4.094 19.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.043 3.957 3 C -0.196 4.196 4 C -0.078 4.078 5 N -0.145 5.145 6 C -0.003 4.003 7 O -0.257 6.257 8 C 0.307 3.693 9 O -0.409 6.409 10 C -0.122 4.122 11 C 0.033 3.967 12 H 0.056 0.944 13 C -0.510 4.510 14 H 0.059 0.941 15 C -0.172 4.172 16 N -0.593 5.593 17 Si 0.740 3.260 18 H -0.216 1.216 19 H -0.141 1.141 20 H -0.227 1.227 21 C -0.063 4.063 22 C -0.134 4.134 23 C -0.145 4.145 24 C -0.157 4.157 25 C -0.144 4.144 26 C -0.167 4.167 27 H 0.116 0.884 28 H 0.105 0.895 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.129 0.871 36 H 0.141 0.859 37 H 0.067 0.933 38 H 0.131 0.869 39 H 0.155 0.845 40 H 0.162 0.838 41 H 0.156 0.844 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.458 17.279 -5.487 18.188 hybrid contribution 0.898 -1.323 0.358 1.639 sum -0.560 15.956 -5.129 16.769 Atomic orbital electron populations 1.21943 0.88955 1.03563 1.05440 1.18249 0.98868 0.95896 0.82666 1.21938 1.01847 0.90362 1.05481 1.29147 0.92031 0.92396 0.94199 1.81239 1.10173 1.09967 1.13167 1.22843 0.99533 0.95622 0.82252 1.86408 1.70230 1.55102 1.14002 1.24192 0.77171 0.82369 0.85563 1.90728 1.36550 1.26065 1.87579 1.21434 1.03836 1.00115 0.86802 1.18107 0.96705 0.92819 0.89077 0.94397 1.20880 0.98226 0.90765 1.41125 0.94103 1.25617 1.01218 0.94864 0.95464 1.70022 1.38821 1.00013 1.50432 0.86255 0.82003 0.80323 0.77416 1.21635 1.14125 1.22717 1.20368 0.93885 0.94337 0.97752 1.21045 0.96103 0.98671 0.97565 1.21395 1.00332 0.98057 0.94702 1.21335 0.92597 1.01173 1.00628 1.21331 0.97508 0.99345 0.96231 1.21266 0.98711 0.99829 0.96886 0.88396 0.89454 0.92525 0.91821 0.89606 0.88253 0.90926 0.92080 0.87086 0.85866 0.93349 0.86936 0.84461 0.83844 0.84361 0.86934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.29 71.98 0.60 -1.46 16 2 C 0.05 0.83 0.78 -53.99 -0.04 0.79 16 3 C -0.14 -1.74 8.29 71.98 0.60 -1.15 16 4 C 0.24 5.47 13.86 89.44 1.24 6.71 16 5 N -0.47 -13.31 18.54 20.00 0.37 -12.94 16 6 C 0.07 1.83 4.28 71.98 0.31 2.14 16 7 O -0.34 -9.12 8.88 -51.48 -0.46 -9.58 16 8 C 0.46 16.54 7.71 71.23 0.55 17.09 16 9 O -0.52 -24.11 14.77 21.97 0.32 -23.78 16 10 C -0.08 -2.75 5.08 29.84 0.15 -2.60 16 11 C 0.05 2.17 1.17 -12.28 -0.01 2.16 16 12 H 0.04 1.68 4.94 -2.39 -0.01 1.67 16 13 C -0.47 -25.13 6.88 25.60 0.18 -24.96 16 14 H 0.04 2.38 8.06 -2.91 -0.02 2.36 16 15 C 0.03 1.46 5.47 84.65 0.46 1.92 16 16 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 17 Si 0.91 45.62 27.00 68.60 1.85 47.48 16 18 H -0.29 -14.95 7.11 99.48 0.71 -14.24 16 19 H -0.22 -9.53 4.72 99.48 0.47 -9.06 16 20 H -0.30 -15.15 7.11 99.48 0.71 -14.45 16 21 C -0.06 -2.35 4.65 -19.87 -0.09 -2.44 16 22 C -0.12 -4.01 8.93 22.27 0.20 -3.81 16 23 C -0.13 -3.61 10.05 22.27 0.22 -3.39 16 24 C -0.14 -3.60 10.05 22.27 0.22 -3.38 16 25 C -0.13 -3.51 10.05 22.27 0.22 -3.29 16 26 C -0.15 -5.02 8.69 22.27 0.19 -4.83 16 27 H 0.10 1.32 7.68 -2.39 -0.02 1.30 16 28 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.10 1.11 7.68 -2.39 -0.02 1.09 16 33 H 0.07 1.86 8.13 -2.39 -0.02 1.85 16 34 H 0.06 1.76 8.13 -2.38 -0.02 1.74 16 35 H 0.11 3.35 8.05 -2.39 -0.02 3.33 16 36 H 0.12 3.05 8.14 -2.38 -0.02 3.03 16 37 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 38 H 0.11 3.99 7.87 -2.91 -0.02 3.97 16 39 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 40 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 41 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 42 H 0.11 3.70 7.12 -2.91 -0.02 3.68 16 Total: -1.00 -74.26 357.16 8.16 -66.10 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.77 Total: 13.39 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: 5.00 Total: -20.50 kcal Atomic # 7 Polarization: -73.78 SS G_CDS: 0.67 Total: -73.11 kcal Atomic # 8 Polarization: -33.23 SS G_CDS: -0.13 Total: -33.36 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.85 Total: 47.48 kcal Total: -74.26 8.16 -66.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796829749.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.727 kcal (2) G-P(sol) polarization free energy of solvation -74.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds