Wall clock time and date at job start Tue Mar 31 2020 08:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47231 * 71.89189 * 3 2 1 5 5 C 1.37098 * 119.99684 * 264.13846 * 4 3 2 6 6 H 1.08004 * 119.99659 * 197.43961 * 5 4 3 7 7 C 1.38945 * 120.00549 * 17.43192 * 5 4 3 8 8 N 1.31418 * 119.99716 * 21.52470 * 7 5 4 9 9 Si 1.86801 * 120.00415 * 201.52642 * 7 5 4 10 10 H 1.48500 * 109.47044 * 90.00076 * 9 7 5 11 11 H 1.48498 * 109.46810 * 210.00195 * 9 7 5 12 12 H 1.48497 * 109.46996 * 329.99997 * 9 7 5 13 13 C 1.34781 * 120.00146 * 84.13483 * 4 3 2 14 14 O 1.21290 * 120.00075 * 180.02562 * 13 4 3 15 15 C 1.50702 * 119.99709 * 0.02562 * 13 4 3 16 16 C 1.52999 * 109.46712 * 179.97438 * 15 13 4 17 17 C 1.52997 * 109.46986 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.47470 * 179.97438 * 17 16 15 19 19 H 1.09000 * 109.46677 * 305.00628 * 18 17 16 20 20 O 1.42900 * 109.46870 * 65.00123 * 18 17 16 21 21 C 1.50698 * 109.47468 * 185.00051 * 18 17 16 22 22 C 1.38233 * 120.00008 * 279.73129 * 21 18 17 23 23 C 1.38237 * 119.99678 * 179.79124 * 22 21 18 24 24 C 1.38231 * 120.00073 * 0.43552 * 23 22 21 25 25 C 1.38231 * 120.00095 * 359.81654 * 24 23 22 26 26 C 1.38236 * 119.99573 * 100.00013 * 21 18 17 27 27 H 4.40641 * 5.51388 * 180.02562 * 4 1 2 28 28 H 1.08994 * 109.47164 * 311.88627 * 3 2 1 29 29 H 1.09000 * 109.46776 * 191.88935 * 3 2 1 30 30 H 0.96996 * 120.00325 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.47275 * 59.99901 * 15 13 4 32 32 H 1.08998 * 109.47017 * 299.99510 * 15 13 4 33 33 H 1.09004 * 109.47352 * 59.99766 * 16 15 13 34 34 H 1.08999 * 109.47341 * 300.00075 * 16 15 13 35 35 H 1.09004 * 109.46957 * 59.99902 * 17 16 15 36 36 H 1.08999 * 109.47450 * 300.00386 * 17 16 15 37 37 H 0.96702 * 113.99922 * 60.00155 * 20 18 17 38 38 H 1.08004 * 120.00172 * 359.97438 * 22 21 18 39 39 H 1.08003 * 119.99619 * 180.27316 * 23 22 21 40 40 H 1.07997 * 119.99827 * 179.83933 * 24 23 22 41 41 H 1.08001 * 120.00139 * 180.02562 * 25 24 23 42 42 H 1.07998 * 120.00254 * 359.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.4284 -1.3128 5 6 3.4780 -1.7392 -1.5215 6 1 4.0907 -2.0085 -2.3691 7 6 3.0379 -2.7212 -0.6425 8 7 1.9864 -2.5019 0.1147 9 14 3.9409 -4.3530 -0.5369 10 1 5.0091 -4.2621 0.4907 11 1 2.9838 -5.4249 -0.1626 12 1 4.5475 -4.6692 -1.8549 13 6 3.2464 0.4654 -2.3154 14 8 3.6504 0.1100 -3.4024 15 6 2.8693 1.9063 -2.0857 16 6 3.0889 2.7023 -3.3738 17 6 2.7055 4.1651 -3.1409 18 6 2.9256 4.9613 -4.4287 19 1 3.9538 4.8298 -4.7659 20 8 2.0296 4.4918 -5.4380 21 6 2.6659 6.4224 -4.1666 22 6 1.3689 6.9000 -4.1401 23 6 1.1305 8.2394 -3.8954 24 6 2.1894 9.1030 -3.6861 25 6 3.4866 8.6264 -3.7177 26 6 3.7249 7.2861 -3.9582 27 1 -1.0499 0.0001 -0.0002 28 1 3.0097 -0.6853 0.7650 29 1 3.0088 1.0065 0.2117 30 1 1.6789 -3.1875 0.7281 31 1 3.4897 2.3221 -1.2919 32 1 1.8203 1.9656 -1.7959 33 1 2.4688 2.2866 -4.1680 34 1 4.1381 2.6430 -3.6633 35 1 3.3253 4.5810 -2.3465 36 1 1.6563 4.2241 -2.8516 37 1 1.0950 4.5782 -5.2053 38 1 0.5418 6.2260 -4.3077 39 1 0.1170 8.6117 -3.8703 40 1 2.0032 10.1499 -3.4975 41 1 4.3139 9.3010 -3.5538 42 1 4.7383 6.9137 -3.9827 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847174927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:45 Heat of formation + Delta-G solvation = -6.963865 kcal Electronic energy + Delta-G solvation = -23396.772784 eV Core-core repulsion = 19922.400185 eV Total energy + Delta-G solvation = -3474.372598 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.86105 -38.67126 -37.23775 -35.23351 -33.66429 -32.12480 -31.63142 -31.17376 -31.07559 -28.49054 -26.41711 -25.17699 -23.81351 -22.82327 -21.49170 -20.94624 -18.80009 -17.84249 -17.69238 -16.60355 -16.23378 -16.10852 -15.75064 -15.30165 -15.00368 -14.53057 -14.25876 -14.16551 -13.88607 -13.61206 -13.35367 -13.14367 -12.60331 -12.36975 -12.22023 -11.98644 -11.81014 -11.50253 -11.43621 -11.31762 -11.20013 -10.98049 -10.70161 -10.47166 -10.35327 -10.23064 -10.02929 -9.34666 -9.24881 -9.15145 -8.93215 -8.87294 -8.34295 -7.83090 -6.30443 -3.82506 1.10625 1.16951 3.16924 3.27049 3.31916 3.53148 3.70704 3.95514 4.06612 4.20250 4.38303 4.43372 4.62536 4.74661 4.86186 4.94106 5.06005 5.08650 5.11692 5.26643 5.31556 5.47274 5.56426 5.62998 5.72228 5.75005 5.80795 5.93337 6.03184 6.08604 6.16249 6.23046 6.27456 6.39442 6.41742 6.62197 6.75700 6.77069 6.80875 7.03762 7.55803 7.59447 8.09661 8.46585 8.81416 9.17940 9.40290 9.96561 10.70719 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.027352 B = 0.002746 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.443384 B =10195.460210 C =10631.656810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.111 4.111 3 C 0.232 3.768 4 N -0.445 5.445 5 C -0.314 4.314 6 H 0.104 0.896 7 C 0.030 3.970 8 N -0.864 5.864 9 Si 0.920 3.080 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.451 3.549 14 O -0.583 6.583 15 C -0.132 4.132 16 C -0.094 4.094 17 C -0.145 4.145 18 C 0.146 3.854 19 H 0.108 0.892 20 O -0.551 6.551 21 C -0.109 4.109 22 C -0.113 4.113 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.119 4.119 26 C -0.111 4.111 27 H 0.199 0.801 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.267 0.733 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.371 0.629 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.234 20.124 -1.519 20.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.113 4.113 3 C 0.109 3.891 4 N -0.163 5.163 5 C -0.442 4.442 6 H 0.121 0.879 7 C -0.174 4.174 8 N -0.503 5.503 9 Si 0.747 3.253 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.194 1.194 13 C 0.240 3.760 14 O -0.467 6.467 15 C -0.172 4.172 16 C -0.132 4.132 17 C -0.183 4.183 18 C 0.087 3.913 19 H 0.125 0.875 20 O -0.356 6.356 21 C -0.110 4.110 22 C -0.131 4.131 23 C -0.136 4.136 24 C -0.143 4.143 25 C -0.137 4.137 26 C -0.130 4.130 27 H 0.216 0.784 28 H 0.127 0.873 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.219 0.781 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.545 19.676 -2.222 19.808 hybrid contribution -0.612 -0.759 0.738 1.223 sum -1.157 18.917 -1.484 19.010 Atomic orbital electron populations 1.24261 0.95370 1.06411 1.02220 1.23219 0.94389 0.95287 0.98373 1.18247 0.84225 0.98163 0.88489 1.43742 1.56243 1.08428 1.07926 1.19674 1.30087 0.81514 1.12894 0.87879 1.25276 0.95204 0.99447 0.97473 1.70090 1.19781 1.35243 1.25146 0.86016 0.79162 0.81237 0.78863 1.20389 1.21171 1.19439 1.20149 0.83955 0.87468 0.84421 1.90519 1.50953 1.80780 1.24470 1.21577 1.02246 0.94580 0.98824 1.21203 1.02659 0.91848 0.97493 1.22327 1.02315 0.96609 0.97001 1.20915 0.94906 0.86901 0.88602 0.87456 1.86657 1.19507 1.85844 1.43600 1.20714 0.93809 0.97007 0.99449 1.20909 0.96243 0.95828 1.00130 1.21124 0.99100 0.93547 0.99822 1.21155 0.92905 0.99683 1.00589 1.21154 0.96960 0.95576 1.00008 1.21044 0.98797 0.93354 0.99760 0.78435 0.87340 0.92057 0.92229 0.90793 0.90405 0.90786 0.91526 0.91029 0.91590 0.78097 0.86164 0.86057 0.86208 0.86040 0.85811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.45 19.25 29.55 0.57 -4.88 16 2 C -0.11 -2.48 10.88 -37.12 -0.40 -2.89 16 3 C 0.23 5.12 4.91 -6.83 -0.03 5.09 16 4 N -0.44 -11.28 2.60 -117.93 -0.31 -11.59 16 5 C -0.31 -8.73 9.33 -14.93 -0.14 -8.87 16 6 H 0.10 3.03 7.39 -52.48 -0.39 2.64 16 7 C 0.03 0.78 4.87 -17.47 -0.08 0.70 16 8 N -0.86 -22.83 9.48 55.50 0.53 -22.30 16 9 Si 0.92 20.65 29.60 -169.99 -5.03 15.61 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 13 C 0.45 10.97 7.56 -10.98 -0.08 10.88 16 14 O -0.58 -16.25 15.63 5.55 0.09 -16.17 16 15 C -0.13 -2.39 4.30 -27.88 -0.12 -2.51 16 16 C -0.09 -1.52 4.40 -26.73 -0.12 -1.64 16 17 C -0.14 -1.74 4.87 -26.73 -0.13 -1.87 16 18 C 0.15 1.67 3.21 -27.88 -0.09 1.58 16 19 H 0.11 1.24 8.00 -51.93 -0.42 0.83 16 20 O -0.55 -6.88 12.72 -35.23 -0.45 -7.33 16 21 C -0.11 -1.14 4.97 -104.63 -0.52 -1.66 16 22 C -0.11 -1.08 9.32 -39.58 -0.37 -1.44 16 23 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 24 C -0.13 -1.05 10.05 -39.59 -0.40 -1.45 16 25 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 26 C -0.11 -1.08 9.67 -39.58 -0.38 -1.46 16 27 H 0.20 3.32 7.80 -54.10 -0.42 2.90 16 28 H 0.11 2.53 6.44 -51.93 -0.33 2.19 16 29 H 0.06 1.12 6.69 -51.93 -0.35 0.77 16 30 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.07 1.17 7.42 -51.93 -0.39 0.79 16 32 H 0.08 1.38 7.51 -51.93 -0.39 0.99 16 33 H 0.07 1.35 7.78 -51.93 -0.40 0.94 16 34 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.37 3.41 7.50 45.56 0.34 3.76 16 38 H 0.12 0.94 6.78 -52.48 -0.36 0.58 16 39 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 40 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 42 H 0.12 1.02 8.04 -52.49 -0.42 0.60 16 LS Contribution 357.23 15.07 5.38 5.38 Total: -1.00 -33.07 357.23 -8.08 -41.15 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -5.19 Total: 8.52 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -3.10 Total: -13.27 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: 0.22 Total: -33.90 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.36 Total: -23.50 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.61 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.07 -8.08 -41.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847174927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.187 kcal (2) G-P(sol) polarization free energy of solvation -33.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds