Wall clock time and date at job start Tue Mar 31 2020 08:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47231 * 71.89189 * 3 2 1 5 5 C 1.37098 * 119.99684 * 264.13846 * 4 3 2 6 6 H 1.08004 * 119.99659 * 197.43961 * 5 4 3 7 7 C 1.38945 * 120.00549 * 17.43192 * 5 4 3 8 8 N 1.31418 * 119.99716 * 21.52470 * 7 5 4 9 9 Si 1.86801 * 120.00415 * 201.52642 * 7 5 4 10 10 H 1.48500 * 109.47044 * 90.00076 * 9 7 5 11 11 H 1.48498 * 109.46810 * 210.00195 * 9 7 5 12 12 H 1.48497 * 109.46996 * 329.99997 * 9 7 5 13 13 C 1.34781 * 120.00146 * 84.13483 * 4 3 2 14 14 O 1.21290 * 120.00075 * 180.02562 * 13 4 3 15 15 C 1.50702 * 119.99709 * 0.02562 * 13 4 3 16 16 C 1.52999 * 109.46712 * 179.97438 * 15 13 4 17 17 C 1.52997 * 109.46986 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.47470 * 179.97438 * 17 16 15 19 19 H 1.09000 * 109.46677 * 305.00628 * 18 17 16 20 20 O 1.42900 * 109.46870 * 65.00123 * 18 17 16 21 21 C 1.50698 * 109.47468 * 185.00051 * 18 17 16 22 22 C 1.38233 * 120.00008 * 279.73129 * 21 18 17 23 23 C 1.38237 * 119.99678 * 179.79124 * 22 21 18 24 24 C 1.38231 * 120.00073 * 0.43552 * 23 22 21 25 25 C 1.38231 * 120.00095 * 359.81654 * 24 23 22 26 26 C 1.38236 * 119.99573 * 100.00013 * 21 18 17 27 27 H 4.40641 * 5.51388 * 180.02562 * 4 1 2 28 28 H 1.08994 * 109.47164 * 311.88627 * 3 2 1 29 29 H 1.09000 * 109.46776 * 191.88935 * 3 2 1 30 30 H 0.96996 * 120.00325 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.47275 * 59.99901 * 15 13 4 32 32 H 1.08998 * 109.47017 * 299.99510 * 15 13 4 33 33 H 1.09004 * 109.47352 * 59.99766 * 16 15 13 34 34 H 1.08999 * 109.47341 * 300.00075 * 16 15 13 35 35 H 1.09004 * 109.46957 * 59.99902 * 17 16 15 36 36 H 1.08999 * 109.47450 * 300.00386 * 17 16 15 37 37 H 0.96702 * 113.99922 * 60.00155 * 20 18 17 38 38 H 1.08004 * 120.00172 * 359.97438 * 22 21 18 39 39 H 1.08003 * 119.99619 * 180.27316 * 23 22 21 40 40 H 1.07997 * 119.99827 * 179.83933 * 24 23 22 41 41 H 1.08001 * 120.00139 * 180.02562 * 25 24 23 42 42 H 1.07998 * 120.00254 * 359.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.4284 -1.3128 5 6 3.4780 -1.7392 -1.5215 6 1 4.0907 -2.0085 -2.3691 7 6 3.0379 -2.7212 -0.6425 8 7 1.9864 -2.5019 0.1147 9 14 3.9409 -4.3530 -0.5369 10 1 5.0091 -4.2621 0.4907 11 1 2.9838 -5.4249 -0.1626 12 1 4.5475 -4.6692 -1.8549 13 6 3.2464 0.4654 -2.3154 14 8 3.6504 0.1100 -3.4024 15 6 2.8693 1.9063 -2.0857 16 6 3.0889 2.7023 -3.3738 17 6 2.7055 4.1651 -3.1409 18 6 2.9256 4.9613 -4.4287 19 1 3.9538 4.8298 -4.7659 20 8 2.0296 4.4918 -5.4380 21 6 2.6659 6.4224 -4.1666 22 6 1.3689 6.9000 -4.1401 23 6 1.1305 8.2394 -3.8954 24 6 2.1894 9.1030 -3.6861 25 6 3.4866 8.6264 -3.7177 26 6 3.7249 7.2861 -3.9582 27 1 -1.0499 0.0001 -0.0002 28 1 3.0097 -0.6853 0.7650 29 1 3.0088 1.0065 0.2117 30 1 1.6789 -3.1875 0.7281 31 1 3.4897 2.3221 -1.2919 32 1 1.8203 1.9656 -1.7959 33 1 2.4688 2.2866 -4.1680 34 1 4.1381 2.6430 -3.6633 35 1 3.3253 4.5810 -2.3465 36 1 1.6563 4.2241 -2.8516 37 1 1.0950 4.5782 -5.2053 38 1 0.5418 6.2260 -4.3077 39 1 0.1170 8.6117 -3.8703 40 1 2.0032 10.1499 -3.4975 41 1 4.3139 9.3010 -3.5538 42 1 4.7383 6.9137 -3.9827 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847174927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:44 Heat of formation + Delta-G solvation = -26.774360 kcal Electronic energy + Delta-G solvation = -23397.631831 eV Core-core repulsion = 19922.400185 eV Total energy + Delta-G solvation = -3475.231646 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.71784 -40.39278 -38.13450 -37.11152 -34.99811 -33.94242 -33.00473 -32.50472 -31.71876 -29.71858 -28.17344 -26.74772 -25.16056 -23.49472 -22.61486 -21.83379 -20.54835 -19.66606 -18.51849 -18.35895 -17.84213 -17.07349 -16.83307 -16.43007 -16.34447 -16.07875 -15.80151 -15.37792 -14.91038 -14.68241 -14.36834 -14.20673 -14.00181 -13.91794 -13.84119 -13.52742 -12.94613 -12.83964 -12.71181 -12.63600 -12.46891 -12.37155 -12.14910 -11.95888 -11.71850 -11.58633 -11.17376 -11.06861 -10.96448 -10.62408 -10.27697 -9.81573 -9.80209 -9.61911 -8.31483 -5.91667 0.42910 0.51895 1.36451 1.41900 1.52975 1.92218 2.16464 2.33974 2.39773 2.85582 3.05377 3.20419 3.58573 3.63872 3.90422 3.92905 3.98225 4.09680 4.13615 4.20375 4.30943 4.37523 4.46452 4.59114 4.63811 4.68733 4.79102 4.87910 4.92348 4.96849 5.00319 5.09870 5.17630 5.31941 5.44381 5.47891 5.48772 5.58273 5.64203 5.69918 6.08086 6.12669 6.46881 6.78989 7.15381 7.17434 7.45305 8.02916 8.67057 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.027352 B = 0.002746 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.443384 B =10195.460210 C =10631.656810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.153 4.153 3 C 0.234 3.766 4 N -0.456 5.456 5 C -0.354 4.354 6 H 0.071 0.929 7 C 0.003 3.997 8 N -0.872 5.872 9 Si 0.983 3.017 10 H -0.263 1.263 11 H -0.278 1.278 12 H -0.280 1.280 13 C 0.436 3.564 14 O -0.632 6.632 15 C -0.118 4.118 16 C -0.086 4.086 17 C -0.130 4.130 18 C 0.150 3.850 19 H 0.099 0.901 20 O -0.571 6.571 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.126 4.126 24 C -0.129 4.129 25 C -0.126 4.126 26 C -0.126 4.126 27 H 0.233 0.767 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.272 0.728 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.384 0.616 38 H 0.132 0.868 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.223 21.809 -0.094 21.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.155 4.155 3 C 0.111 3.889 4 N -0.175 5.175 5 C -0.481 4.481 6 H 0.089 0.911 7 C -0.201 4.201 8 N -0.509 5.509 9 Si 0.807 3.193 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.205 1.205 13 C 0.227 3.773 14 O -0.520 6.520 15 C -0.158 4.158 16 C -0.124 4.124 17 C -0.168 4.168 18 C 0.091 3.909 19 H 0.117 0.883 20 O -0.379 6.379 21 C -0.124 4.124 22 C -0.142 4.142 23 C -0.144 4.144 24 C -0.147 4.147 25 C -0.144 4.144 26 C -0.144 4.144 27 H 0.249 0.751 28 H 0.109 0.891 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.122 0.878 32 H 0.106 0.894 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.234 0.766 38 H 0.150 0.850 39 H 0.159 0.841 40 H 0.160 0.840 41 H 0.159 0.841 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.558 21.382 -0.755 21.452 hybrid contribution -0.371 -1.272 0.285 1.355 sum -1.929 20.110 -0.470 20.208 Atomic orbital electron populations 1.25137 0.96350 1.04700 1.00319 1.23470 0.95012 0.96907 1.00084 1.18316 0.84618 0.99628 0.86290 1.43973 1.56167 1.07891 1.09435 1.19544 1.31655 0.83572 1.13340 0.91087 1.25944 0.95458 1.02124 0.96539 1.70178 1.19803 1.36155 1.24771 0.85102 0.78334 0.77382 0.78495 1.18846 1.20295 1.20515 1.21243 0.82733 0.89753 0.83545 1.90477 1.52965 1.82128 1.26422 1.21542 1.03129 0.90441 1.00650 1.21099 1.01255 0.94324 0.95730 1.22196 1.03235 0.93472 0.97893 1.20810 0.94400 0.87821 0.87881 0.88315 1.86620 1.20700 1.86146 1.44401 1.20618 0.94622 0.96190 1.00928 1.21146 0.96263 0.96679 1.00134 1.21435 1.00328 0.93274 0.99319 1.21513 0.92706 1.00870 0.99623 1.21446 0.97958 0.95456 0.99550 1.21259 0.99101 0.93986 1.00036 0.75073 0.89099 0.88221 0.91852 0.87796 0.89375 0.93465 0.93019 0.89537 0.90349 0.76645 0.84975 0.84108 0.84007 0.84134 0.85141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.63 19.25 74.32 1.43 -8.20 16 2 C -0.15 -6.65 10.88 31.13 0.34 -6.32 16 3 C 0.23 10.20 4.91 84.58 0.42 10.62 16 4 N -0.46 -23.61 2.60 -645.41 -1.68 -25.29 16 5 C -0.35 -20.29 9.33 84.04 0.78 -19.51 16 6 H 0.07 4.43 7.39 -2.91 -0.02 4.41 16 7 C 0.00 0.14 4.87 84.92 0.41 0.56 16 8 N -0.87 -45.74 9.48 21.66 0.21 -45.53 16 9 Si 0.98 42.62 29.60 68.60 2.03 44.65 16 10 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 11 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 13 C 0.44 21.73 7.56 87.66 0.66 22.40 16 14 O -0.63 -36.99 15.63 -3.06 -0.05 -37.04 16 15 C -0.12 -4.18 4.30 29.85 0.13 -4.05 16 16 C -0.09 -2.79 4.40 30.59 0.13 -2.65 16 17 C -0.13 -2.96 4.87 30.59 0.15 -2.81 16 18 C 0.15 3.35 3.21 29.85 0.10 3.44 16 19 H 0.10 2.32 8.00 -2.39 -0.02 2.30 16 20 O -0.57 -14.21 12.72 -148.98 -1.90 -16.11 16 21 C -0.12 -2.42 4.97 -19.87 -0.10 -2.52 16 22 C -0.12 -2.15 9.32 22.27 0.21 -1.94 16 23 C -0.13 -1.89 10.05 22.27 0.22 -1.66 16 24 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 25 C -0.13 -1.93 10.05 22.27 0.22 -1.71 16 26 C -0.13 -2.27 9.67 22.27 0.22 -2.06 16 27 H 0.23 6.98 7.80 -4.42 -0.03 6.95 16 28 H 0.09 4.24 6.44 -2.39 -0.02 4.22 16 29 H 0.10 3.45 6.69 -2.39 -0.02 3.44 16 30 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 31 H 0.10 3.06 7.42 -2.39 -0.02 3.04 16 32 H 0.09 2.98 7.51 -2.39 -0.02 2.96 16 33 H 0.05 1.77 7.78 -2.38 -0.02 1.75 16 34 H 0.05 1.80 8.10 -2.39 -0.02 1.79 16 35 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.38 6.85 7.50 -74.06 -0.56 6.29 16 38 H 0.13 1.83 6.78 -2.91 -0.02 1.81 16 39 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 40 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 41 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.13 2.04 8.04 -2.91 -0.02 2.02 16 Total: -1.00 -73.58 357.23 4.63 -68.95 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 0.46 Total: 28.40 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: 5.55 Total: -18.04 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: -1.47 Total: -70.82 kcal Atomic # 8 Polarization: -51.20 SS G_CDS: -1.94 Total: -53.15 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -73.58 4.63 -68.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847174927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.180 kcal (2) G-P(sol) polarization free energy of solvation -73.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds