Wall clock time and date at job start Tue Mar 31 2020 08:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50694 * 120.00159 * 2 1 4 4 H 1.09005 * 109.47183 * 359.97438 * 3 2 1 5 5 C 1.50701 * 109.47452 * 119.99731 * 3 2 1 6 6 O 1.21284 * 120.00150 * 120.00173 * 5 3 2 7 7 N 1.34776 * 119.99914 * 300.00259 * 5 3 2 8 8 C 1.47023 * 125.64956 * 0.02562 * 7 5 3 9 9 C 1.54320 * 107.27165 * 181.02451 * 8 7 5 10 10 C 1.55156 * 102.94303 * 22.19259 * 9 8 7 11 11 O 1.42895 * 111.00454 * 82.57502 * 10 9 8 12 12 C 1.50700 * 111.00122 * 206.38640 * 10 9 8 13 13 H 1.08004 * 120.00184 * 118.54634 * 12 10 9 14 14 C 1.37877 * 120.00147 * 298.54448 * 12 10 9 15 15 N 1.31516 * 119.99859 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00009 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47367 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47100 * 120.00157 * 16 14 12 19 19 H 1.48493 * 109.47356 * 240.00047 * 16 14 12 20 20 C 1.47427 * 125.64851 * 179.71572 * 7 5 3 21 21 C 1.50702 * 109.47454 * 239.99985 * 3 2 1 22 22 C 1.38234 * 120.00271 * 119.99386 * 21 3 2 23 23 C 1.38230 * 119.99880 * 179.97438 * 22 21 3 24 24 C 1.38235 * 120.00326 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99814 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99485 * 299.97513 * 21 3 2 27 27 H 1.08002 * 119.99721 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00399 * 0.02562 * 1 2 3 29 29 H 1.08009 * 120.00082 * 179.97438 * 2 1 3 30 30 H 1.09010 * 109.88159 * 300.44076 * 8 7 5 31 31 H 1.08998 * 109.88240 * 61.60207 * 8 7 5 32 32 H 1.09008 * 110.72106 * 140.55867 * 9 8 7 33 33 H 1.09003 * 110.71927 * 263.65024 * 9 8 7 34 34 H 0.96705 * 114.00636 * 61.45183 * 11 10 9 35 35 H 0.97007 * 119.99762 * 180.02562 * 15 14 12 36 36 H 1.08995 * 110.36503 * 274.74683 * 20 7 5 37 37 H 1.08999 * 110.36775 * 37.07315 * 20 7 5 38 38 H 1.08001 * 119.99769 * 359.97438 * 22 21 3 39 39 H 1.08000 * 120.00376 * 180.02562 * 23 22 21 40 40 H 1.08000 * 120.00616 * 179.72578 * 24 23 22 41 41 H 1.08001 * 120.00299 * 179.97438 * 25 24 23 42 42 H 1.07997 * 120.00489 * 0.02562 * 26 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9299 1.3849 1.2305 6 8 4.1325 1.4958 1.1192 7 7 2.3683 1.3332 2.4546 8 6 0.9308 1.2002 2.7329 9 6 0.7581 1.2110 4.2664 10 6 2.0495 1.9176 4.7565 11 8 1.9173 3.3383 4.6780 12 6 2.4021 1.4875 6.1571 13 1 3.3387 0.9846 6.3479 14 6 1.5291 1.7359 7.1950 15 7 0.3884 2.3478 6.9626 16 14 1.9660 1.2020 8.9310 17 1 3.2946 0.5388 8.9254 18 1 2.0110 2.3920 9.8183 19 1 0.9399 0.2514 9.4295 20 6 3.0942 1.3942 3.7362 21 6 2.9299 1.3849 -1.2304 22 6 2.7455 2.4090 -2.1404 23 6 3.5406 2.4825 -3.2688 24 6 4.5206 1.5323 -3.4869 25 6 4.7057 0.5088 -2.5764 26 6 3.9094 0.4342 -1.4488 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5401 0.9353 -0.0004 29 1 1.8500 -0.9354 0.0004 30 1 0.3889 2.0375 2.2929 31 1 0.5596 0.2602 2.3246 32 1 -0.1258 1.7821 4.5509 33 1 0.7002 0.1943 4.6551 34 1 1.2076 3.6984 5.2275 35 1 -0.2256 2.5229 7.6929 36 1 3.4431 0.4020 4.0221 37 1 3.9333 2.0863 3.6644 38 1 1.9801 3.1517 -1.9698 39 1 3.3969 3.2828 -3.9796 40 1 5.1389 1.5871 -4.3707 41 1 5.4710 -0.2339 -2.7470 42 1 4.0535 -0.3659 -0.7380 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349959936.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:55 Heat of formation + Delta-G solvation = -36.917388 kcal Electronic energy + Delta-G solvation = -24612.547180 eV Core-core repulsion = 21136.875700 eV Total energy + Delta-G solvation = -3475.671481 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.18520 -38.75554 -37.16754 -35.14971 -34.17224 -32.23987 -31.18814 -30.81744 -29.85139 -28.34145 -27.08507 -24.94451 -22.68438 -22.41625 -21.47420 -20.38818 -19.64877 -18.63256 -17.22003 -16.97947 -16.65138 -15.47476 -15.26833 -14.97239 -14.95686 -14.74184 -14.34838 -13.96875 -13.61609 -13.31219 -13.23887 -12.80247 -12.69587 -12.50326 -12.14578 -11.94358 -11.73116 -11.43188 -11.37200 -11.27723 -11.05931 -10.90572 -10.83301 -10.63842 -10.46623 -10.05791 -9.86379 -9.40996 -9.03835 -8.80198 -8.70176 -8.64403 -8.22628 -7.96554 -6.30289 -4.38098 1.37209 1.49208 2.18973 3.07249 3.17452 3.26731 3.31116 3.51832 3.92208 4.25635 4.71471 4.77334 4.94943 4.95387 5.04637 5.08322 5.10816 5.16970 5.45775 5.55958 5.56696 5.67219 5.73148 5.80567 5.89818 5.99753 6.03860 6.10412 6.28927 6.43005 6.47393 6.49923 6.55619 6.58732 6.65235 6.71055 6.89276 6.96751 7.05437 7.28403 7.33305 7.71666 8.00539 8.14340 8.62361 8.66374 9.29052 9.37830 10.77085 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.029534 B = 0.003505 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.844841 B = 7986.939833 C = 8277.557804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C -0.038 4.038 4 H 0.103 0.897 5 C 0.531 3.469 6 O -0.545 6.545 7 N -0.601 5.601 8 C 0.096 3.904 9 C -0.136 4.136 10 C 0.248 3.752 11 O -0.582 6.582 12 C -0.534 4.534 13 H 0.065 0.935 14 C 0.073 3.927 15 N -0.895 5.895 16 Si 0.902 3.098 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.120 3.880 21 C -0.056 4.056 22 C -0.112 4.112 23 C -0.125 4.125 24 C -0.124 4.124 25 C -0.124 4.124 26 C -0.081 4.081 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.114 0.886 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.380 0.620 35 H 0.267 0.733 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.388 -3.656 -16.089 16.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.059 4.059 4 H 0.121 0.879 5 C 0.318 3.682 6 O -0.424 6.424 7 N -0.333 5.333 8 C -0.027 4.027 9 C -0.175 4.175 10 C 0.207 3.793 11 O -0.391 6.391 12 C -0.573 4.573 13 H 0.083 0.917 14 C -0.130 4.130 15 N -0.534 5.534 16 Si 0.730 3.270 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.002 4.002 21 C -0.056 4.056 22 C -0.130 4.130 23 C -0.143 4.143 24 C -0.142 4.142 25 C -0.142 4.142 26 C -0.099 4.099 27 H 0.122 0.878 28 H 0.118 0.882 29 H 0.132 0.868 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.230 0.770 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.377 -3.600 -16.534 16.925 hybrid contribution -0.468 -0.187 1.469 1.553 sum -0.845 -3.787 -15.065 15.556 Atomic orbital electron populations 1.23892 0.95441 1.02364 0.99602 1.22545 0.95826 0.96666 1.00820 1.19443 0.96708 0.98282 0.91452 0.87853 1.19790 0.88104 0.77142 0.83179 1.90684 1.14784 1.50826 1.86063 1.48563 1.08993 1.70283 1.05474 1.22354 0.80892 0.99799 0.99646 1.23178 1.02410 1.02148 0.89763 1.19647 0.88755 0.79262 0.91617 1.86140 1.59379 1.22470 1.71081 1.21487 1.04991 1.38891 0.91899 0.91707 1.24984 0.94438 0.94021 0.99543 1.69728 1.09288 1.41612 1.32788 0.86373 0.78658 0.78425 0.83585 1.19581 1.20783 1.20841 1.22420 0.96203 1.00308 0.81223 1.19249 0.96453 0.95583 0.94321 1.20995 0.99924 0.97616 0.94478 1.21028 0.96397 0.99166 0.97689 1.21094 0.98406 0.95288 0.99390 1.21093 0.99540 0.98780 0.94745 1.20915 0.94226 0.98454 0.96338 0.87771 0.88166 0.86825 0.92735 0.92131 0.89610 0.91429 0.77015 0.92310 0.91066 0.91203 0.86215 0.86243 0.86412 0.86262 0.86341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 12.56 29.02 0.36 -1.48 16 2 C -0.14 -1.73 6.96 -36.03 -0.25 -1.99 16 3 C -0.04 -0.55 2.21 -94.08 -0.21 -0.76 16 4 H 0.10 1.39 7.52 -51.93 -0.39 1.00 16 5 C 0.53 10.04 7.07 -10.99 -0.08 9.96 16 6 O -0.55 -12.00 15.36 5.55 0.09 -11.92 16 7 N -0.60 -11.83 3.32 -170.38 -0.57 -12.39 16 8 C 0.10 1.70 5.73 -3.07 -0.02 1.68 16 9 C -0.14 -2.87 5.37 -24.90 -0.13 -3.01 16 10 C 0.25 5.91 0.87 -89.50 -0.08 5.83 16 11 O -0.58 -14.70 13.17 -35.23 -0.46 -15.16 16 12 C -0.53 -13.80 8.27 -34.44 -0.28 -14.09 16 13 H 0.06 1.68 7.79 -52.48 -0.41 1.27 16 14 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 15 N -0.89 -22.68 10.76 55.43 0.60 -22.08 16 16 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 C 0.12 2.68 6.10 -2.41 -0.01 2.67 16 21 C -0.06 -0.80 4.39 -104.62 -0.46 -1.26 16 22 C -0.11 -1.43 9.67 -39.59 -0.38 -1.82 16 23 C -0.12 -1.43 10.05 -39.59 -0.40 -1.83 16 24 C -0.12 -1.40 10.05 -39.58 -0.40 -1.79 16 25 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16 26 C -0.08 -1.15 8.03 -39.58 -0.32 -1.47 16 27 H 0.10 0.93 8.06 -52.49 -0.42 0.50 16 28 H 0.10 0.98 7.83 -52.49 -0.41 0.57 16 29 H 0.11 1.37 8.03 -52.48 -0.42 0.95 16 30 H 0.05 0.92 8.14 -51.92 -0.42 0.49 16 31 H 0.06 0.94 5.74 -51.93 -0.30 0.64 16 32 H 0.09 1.89 7.54 -51.92 -0.39 1.50 16 33 H 0.07 1.44 8.04 -51.93 -0.42 1.03 16 34 H 0.38 9.53 7.57 45.56 0.34 9.87 16 35 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 36 H 0.07 1.55 8.04 -51.93 -0.42 1.13 16 37 H 0.07 1.68 8.03 -51.93 -0.42 1.26 16 38 H 0.12 1.31 7.95 -52.49 -0.42 0.90 16 39 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.12 1.70 7.96 -52.49 -0.42 1.28 16 LS Contribution 346.84 15.07 5.23 5.23 Total: -1.00 -29.02 346.84 -8.60 -37.62 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -5.31 Total: 13.22 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -3.15 Total: -9.51 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 0.03 Total: -34.48 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.38 Total: -27.08 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.02 -8.60 -37.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349959936.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.701 kcal (2) G-P(sol) polarization free energy of solvation -29.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds