Wall clock time and date at job start Tue Mar 31 2020 08:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50694 * 120.00159 * 2 1 4 4 H 1.09005 * 109.47183 * 359.97438 * 3 2 1 5 5 C 1.50701 * 109.47452 * 119.99731 * 3 2 1 6 6 O 1.21284 * 120.00150 * 120.00173 * 5 3 2 7 7 N 1.34776 * 119.99914 * 300.00259 * 5 3 2 8 8 C 1.47023 * 125.64956 * 0.02562 * 7 5 3 9 9 C 1.54320 * 107.27165 * 181.02451 * 8 7 5 10 10 C 1.55156 * 102.94303 * 22.19259 * 9 8 7 11 11 O 1.42895 * 111.00454 * 82.57502 * 10 9 8 12 12 C 1.50700 * 111.00122 * 206.38640 * 10 9 8 13 13 H 1.08004 * 120.00184 * 118.54634 * 12 10 9 14 14 C 1.37877 * 120.00147 * 298.54448 * 12 10 9 15 15 N 1.31516 * 119.99859 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00009 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47367 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47100 * 120.00157 * 16 14 12 19 19 H 1.48493 * 109.47356 * 240.00047 * 16 14 12 20 20 C 1.47427 * 125.64851 * 179.71572 * 7 5 3 21 21 C 1.50702 * 109.47454 * 239.99985 * 3 2 1 22 22 C 1.38234 * 120.00271 * 119.99386 * 21 3 2 23 23 C 1.38230 * 119.99880 * 179.97438 * 22 21 3 24 24 C 1.38235 * 120.00326 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99814 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99485 * 299.97513 * 21 3 2 27 27 H 1.08002 * 119.99721 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00399 * 0.02562 * 1 2 3 29 29 H 1.08009 * 120.00082 * 179.97438 * 2 1 3 30 30 H 1.09010 * 109.88159 * 300.44076 * 8 7 5 31 31 H 1.08998 * 109.88240 * 61.60207 * 8 7 5 32 32 H 1.09008 * 110.72106 * 140.55867 * 9 8 7 33 33 H 1.09003 * 110.71927 * 263.65024 * 9 8 7 34 34 H 0.96705 * 114.00636 * 61.45183 * 11 10 9 35 35 H 0.97007 * 119.99762 * 180.02562 * 15 14 12 36 36 H 1.08995 * 110.36503 * 274.74683 * 20 7 5 37 37 H 1.08999 * 110.36775 * 37.07315 * 20 7 5 38 38 H 1.08001 * 119.99769 * 359.97438 * 22 21 3 39 39 H 1.08000 * 120.00376 * 180.02562 * 23 22 21 40 40 H 1.08000 * 120.00616 * 179.72578 * 24 23 22 41 41 H 1.08001 * 120.00299 * 179.97438 * 25 24 23 42 42 H 1.07997 * 120.00489 * 0.02562 * 26 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9299 1.3849 1.2305 6 8 4.1325 1.4958 1.1192 7 7 2.3683 1.3332 2.4546 8 6 0.9308 1.2002 2.7329 9 6 0.7581 1.2110 4.2664 10 6 2.0495 1.9176 4.7565 11 8 1.9173 3.3383 4.6780 12 6 2.4021 1.4875 6.1571 13 1 3.3387 0.9846 6.3479 14 6 1.5291 1.7359 7.1950 15 7 0.3884 2.3478 6.9626 16 14 1.9660 1.2020 8.9310 17 1 3.2946 0.5388 8.9254 18 1 2.0110 2.3920 9.8183 19 1 0.9399 0.2514 9.4295 20 6 3.0942 1.3942 3.7362 21 6 2.9299 1.3849 -1.2304 22 6 2.7455 2.4090 -2.1404 23 6 3.5406 2.4825 -3.2688 24 6 4.5206 1.5323 -3.4869 25 6 4.7057 0.5088 -2.5764 26 6 3.9094 0.4342 -1.4488 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5401 0.9353 -0.0004 29 1 1.8500 -0.9354 0.0004 30 1 0.3889 2.0375 2.2929 31 1 0.5596 0.2602 2.3246 32 1 -0.1258 1.7821 4.5509 33 1 0.7002 0.1943 4.6551 34 1 1.2076 3.6984 5.2275 35 1 -0.2256 2.5229 7.6929 36 1 3.4431 0.4020 4.0221 37 1 3.9333 2.0863 3.6644 38 1 1.9801 3.1517 -1.9698 39 1 3.3969 3.2828 -3.9796 40 1 5.1389 1.5871 -4.3707 41 1 5.4710 -0.2339 -2.7470 42 1 4.0535 -0.3659 -0.7380 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349959936.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:55 Heat of formation + Delta-G solvation = -54.165180 kcal Electronic energy + Delta-G solvation = -24613.295101 eV Core-core repulsion = 21136.875700 eV Total energy + Delta-G solvation = -3476.419401 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.51893 -39.99789 -38.77530 -36.39008 -35.78393 -34.21916 -32.11793 -31.74596 -31.52956 -30.02860 -28.34831 -26.68827 -23.97616 -23.58168 -22.53842 -21.72992 -21.20337 -19.98117 -19.06907 -18.29911 -17.78087 -16.98368 -16.79042 -16.52953 -16.18399 -16.01152 -15.87802 -15.25972 -14.88119 -14.80170 -14.34205 -14.14079 -13.93584 -13.77497 -13.65053 -13.41410 -13.23170 -13.13891 -13.02796 -12.66107 -12.48648 -12.31518 -12.24004 -11.98087 -11.86437 -11.76565 -11.27616 -11.18522 -10.66156 -10.20384 -10.10440 -9.76099 -9.61778 -9.54695 -8.24145 -6.38800 0.41749 0.55081 1.27388 1.40409 1.45098 1.54710 1.64374 2.06671 2.40339 2.92976 3.00870 3.56593 3.74173 3.77006 3.93830 3.98933 4.06266 4.18486 4.20253 4.30108 4.36058 4.37568 4.52606 4.59682 4.66525 4.70388 4.77998 4.88794 5.01781 5.09562 5.17057 5.18615 5.28090 5.45175 5.54261 5.57335 5.63357 5.64327 5.67771 5.76706 5.77250 6.08687 6.14267 6.61162 6.65963 7.13352 7.31330 7.39876 8.81805 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.029534 B = 0.003505 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.844841 B = 7986.939833 C = 8277.557804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.164 4.164 3 C -0.024 4.024 4 H 0.117 0.883 5 C 0.525 3.475 6 O -0.584 6.584 7 N -0.605 5.605 8 C 0.106 3.894 9 C -0.126 4.126 10 C 0.235 3.765 11 O -0.593 6.593 12 C -0.562 4.562 13 H 0.052 0.948 14 C 0.039 3.961 15 N -0.904 5.904 16 Si 0.959 3.041 17 H -0.276 1.276 18 H -0.281 1.281 19 H -0.274 1.274 20 C 0.125 3.875 21 C -0.077 4.077 22 C -0.124 4.124 23 C -0.126 4.126 24 C -0.125 4.125 25 C -0.134 4.134 26 C -0.104 4.104 27 H 0.125 0.875 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.378 0.622 35 H 0.271 0.729 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.136 0.864 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.136 0.864 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.774 -3.849 -17.610 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.183 4.183 3 C -0.045 4.045 4 H 0.135 0.865 5 C 0.315 3.685 6 O -0.465 6.465 7 N -0.336 5.336 8 C -0.016 4.016 9 C -0.165 4.165 10 C 0.195 3.805 11 O -0.401 6.401 12 C -0.601 4.601 13 H 0.070 0.930 14 C -0.163 4.163 15 N -0.543 5.543 16 Si 0.784 3.216 17 H -0.200 1.200 18 H -0.206 1.206 19 H -0.199 1.199 20 C 0.002 3.998 21 C -0.078 4.078 22 C -0.142 4.142 23 C -0.144 4.144 24 C -0.142 4.142 25 C -0.151 4.151 26 C -0.122 4.122 27 H 0.143 0.857 28 H 0.130 0.870 29 H 0.128 0.872 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.227 0.773 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.154 0.846 39 H 0.166 0.834 40 H 0.165 0.835 41 H 0.154 0.846 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.789 -3.798 -18.071 18.552 hybrid contribution -0.009 -0.101 1.910 1.912 sum -1.798 -3.899 -16.161 16.722 Atomic orbital electron populations 1.24178 0.94624 1.03949 0.96174 1.22444 0.96473 0.95503 1.03847 1.19374 0.96171 0.99994 0.88984 0.86543 1.20707 0.88248 0.75632 0.83926 1.90653 1.16815 1.52325 1.86658 1.48627 1.09490 1.70613 1.04907 1.22367 0.79895 1.02031 0.97298 1.22961 1.00356 1.01042 0.92101 1.19795 0.90626 0.78712 0.91375 1.86128 1.59445 1.23558 1.70984 1.21684 1.04975 1.39862 0.93530 0.92982 1.25573 0.94389 0.93957 1.02389 1.69781 1.09472 1.41354 1.33694 0.85503 0.78263 0.78055 0.79736 1.20038 1.20640 1.19919 1.22173 0.95415 0.99423 0.82800 1.19392 0.97058 0.96491 0.94846 1.21284 1.00735 0.97445 0.94745 1.21428 0.95656 0.99715 0.97610 1.21485 0.98412 0.94452 0.99883 1.21380 0.99611 0.99731 0.94422 1.20975 0.95408 0.98701 0.97133 0.85707 0.86965 0.87154 0.91130 0.89168 0.90526 0.92011 0.77290 0.91950 0.91142 0.93878 0.84626 0.83402 0.83511 0.84618 0.87785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 12.56 67.78 0.85 -1.85 16 2 C -0.16 -3.79 6.96 25.65 0.18 -3.61 16 3 C -0.02 -0.68 2.21 -13.03 -0.03 -0.71 16 4 H 0.12 2.90 7.52 -2.38 -0.02 2.89 16 5 C 0.53 20.03 7.07 87.66 0.62 20.65 16 6 O -0.58 -26.58 15.36 -3.04 -0.05 -26.62 16 7 N -0.60 -23.84 3.32 -811.34 -2.69 -26.53 16 8 C 0.11 3.60 5.73 86.73 0.50 4.10 16 9 C -0.13 -5.26 5.37 31.78 0.17 -5.09 16 10 C 0.23 11.42 0.87 -10.07 -0.01 11.41 16 11 O -0.59 -30.48 13.17 -148.98 -1.96 -32.44 16 12 C -0.56 -29.62 8.27 25.60 0.21 -29.41 16 13 H 0.05 2.79 7.79 -2.91 -0.02 2.77 16 14 C 0.04 1.96 5.29 84.65 0.45 2.41 16 15 N -0.90 -45.58 10.76 21.45 0.23 -45.35 16 16 Si 0.96 41.01 29.54 68.60 2.03 43.04 16 17 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 19 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 20 C 0.12 5.76 6.10 86.93 0.53 6.29 16 21 C -0.08 -2.18 4.39 -19.87 -0.09 -2.27 16 22 C -0.12 -2.97 9.67 22.27 0.22 -2.76 16 23 C -0.13 -2.58 10.05 22.27 0.22 -2.36 16 24 C -0.12 -2.53 10.05 22.27 0.22 -2.31 16 25 C -0.13 -3.18 10.05 22.27 0.22 -2.96 16 26 C -0.10 -2.98 8.03 22.27 0.18 -2.80 16 27 H 0.12 1.73 8.06 -2.91 -0.02 1.70 16 28 H 0.11 1.74 7.83 -2.91 -0.02 1.72 16 29 H 0.11 2.59 8.03 -2.91 -0.02 2.57 16 30 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.09 2.55 5.74 -2.39 -0.01 2.54 16 32 H 0.08 3.33 7.54 -2.38 -0.02 3.32 16 33 H 0.06 2.62 8.04 -2.39 -0.02 2.60 16 34 H 0.38 19.25 7.57 -74.05 -0.56 18.69 16 35 H 0.27 12.97 8.31 -92.70 -0.77 12.20 16 36 H 0.07 3.20 8.04 -2.39 -0.02 3.18 16 37 H 0.04 2.17 8.03 -2.39 -0.02 2.16 16 38 H 0.14 2.68 7.95 -2.91 -0.02 2.65 16 39 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 40 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 41 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 42 H 0.10 3.15 7.96 -2.91 -0.02 3.12 16 Total: -1.00 -63.60 346.84 2.46 -61.15 By element: Atomic # 1 Polarization: 37.57 SS G_CDS: 0.45 Total: 38.03 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 4.45 Total: -11.26 kcal Atomic # 7 Polarization: -69.42 SS G_CDS: -2.46 Total: -71.88 kcal Atomic # 8 Polarization: -57.05 SS G_CDS: -2.01 Total: -59.06 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -63.60 2.46 -61.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349959936.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.980 kcal (2) G-P(sol) polarization free energy of solvation -63.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds