Wall clock time and date at job start Tue Mar 31 2020 07:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33080 * 120.00451 * 2 1 4 4 C 1.46943 * 120.00430 * 170.72923 * 3 2 1 5 5 O 1.21538 * 120.00002 * 354.07637 * 4 3 2 6 6 O 1.34800 * 120.00301 * 174.08007 * 4 3 2 7 7 C 1.50704 * 119.99785 * 180.02562 * 2 1 3 8 8 N 1.46907 * 109.46844 * 273.90812 * 7 2 1 9 9 C 1.47170 * 110.99572 * 189.01804 * 8 7 2 10 10 C 1.52896 * 108.45160 * 165.53329 * 9 8 7 11 11 C 1.50686 * 109.98997 * 50.26113 * 10 9 8 12 12 C 1.41112 * 118.49651 * 163.31790 * 11 10 9 13 13 C 1.41402 * 120.08207 * 359.44661 * 12 11 10 14 14 H 1.08001 * 119.99958 * 29.75845 * 13 12 11 15 15 C 1.39945 * 119.99940 * 209.76014 * 13 12 11 16 16 N 1.30823 * 120.00094 * 9.97526 * 15 13 12 17 17 Si 1.86802 * 119.99749 * 189.97028 * 15 13 12 18 18 H 1.48504 * 109.46749 * 60.00312 * 17 15 13 19 19 H 1.48505 * 109.46966 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47056 * 300.00321 * 17 15 13 21 21 C 1.40533 * 119.84099 * 179.44958 * 12 11 10 22 22 C 1.37640 * 119.53938 * 0.12070 * 21 12 11 23 23 C 1.38401 * 120.13829 * 0.04430 * 22 21 12 24 24 C 1.37204 * 121.80455 * 343.06079 * 11 10 9 25 25 C 1.46617 * 110.99805 * 66.04977 * 8 7 2 26 26 H 1.08997 * 109.46752 * 270.00109 * 1 2 3 27 27 H 1.09000 * 109.47013 * 29.99705 * 1 2 3 28 28 H 1.09001 * 109.47032 * 149.99636 * 1 2 3 29 29 H 1.08004 * 119.99641 * 350.73531 * 3 2 1 30 30 H 0.96707 * 117.00248 * 180.02562 * 6 4 3 31 31 H 1.09003 * 109.47024 * 153.91063 * 7 2 1 32 32 H 1.08994 * 109.47461 * 33.90724 * 7 2 1 33 33 H 1.09003 * 109.63861 * 285.21852 * 9 8 7 34 34 H 1.08995 * 109.63946 * 45.84297 * 9 8 7 35 35 H 1.09002 * 109.38461 * 290.10510 * 10 9 8 36 36 H 1.08997 * 109.30181 * 170.36644 * 10 9 8 37 37 H 0.96996 * 119.99557 * 179.97438 * 16 15 13 38 38 H 1.08001 * 120.23233 * 180.09692 * 21 12 11 39 39 H 1.07993 * 119.93164 * 180.02562 * 22 21 12 40 40 H 1.08003 * 119.53474 * 179.97438 * 23 22 21 41 41 H 1.09002 * 109.26457 * 296.20951 * 25 8 7 42 42 H 1.08997 * 109.26562 * 55.70014 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1725 1.1525 0.0000 4 6 3.6275 1.1608 0.2050 5 8 4.2082 0.1294 0.4813 6 8 4.3184 2.3122 0.0867 7 6 2.2605 -1.3052 -0.0006 8 7 2.4235 -1.7770 1.3811 9 6 3.3345 -2.9314 1.4400 10 6 3.7487 -3.1471 2.8959 11 6 2.5284 -3.1781 3.7794 12 6 2.6516 -3.7137 5.0791 13 6 3.8962 -4.2170 5.5232 14 1 4.8154 -3.8002 5.1388 15 6 3.9368 -5.2551 6.4608 16 7 2.8392 -5.8912 6.7804 17 14 5.5583 -5.7327 7.2559 18 1 6.1129 -4.5659 7.9883 19 1 5.3333 -6.8523 8.2052 20 1 6.5176 -6.1597 6.2059 21 6 1.5345 -3.7457 5.9311 22 6 0.3277 -3.2552 5.4865 23 6 0.2173 -2.7352 4.2086 24 6 1.3156 -2.6975 3.3544 25 6 1.1281 -2.1224 1.9746 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6431 2.0817 -0.1506 30 1 5.2737 2.2678 0.2302 31 1 3.2415 -1.1582 -0.4525 32 1 1.7036 -2.0460 -0.5742 33 1 2.8241 -3.8201 1.0688 34 1 4.2179 -2.7322 0.8334 35 1 4.4025 -2.3337 3.2104 36 1 4.2819 -4.0939 2.9823 37 1 2.8675 -6.6110 7.4299 38 1 1.6220 -4.1528 6.9276 39 1 -0.5348 -3.2763 6.1360 40 1 -0.7344 -2.3533 3.8697 41 1 0.5117 -1.2257 2.0395 42 1 0.6281 -2.8575 1.3440 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588948978.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:13 Heat of formation + Delta-G solvation = -48.502698 kcal Electronic energy + Delta-G solvation = -24606.043172 eV Core-core repulsion = 21129.869315 eV Total energy + Delta-G solvation = -3476.173857 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.16894 -38.90164 -37.07725 -35.80489 -34.66551 -33.54120 -31.54783 -30.17166 -28.72765 -28.24970 -26.28902 -25.05660 -23.17987 -22.58646 -21.74918 -20.41700 -18.58893 -18.35870 -18.00540 -16.92571 -16.31370 -15.74515 -15.43693 -15.10512 -14.78396 -14.33506 -14.07880 -13.84527 -13.42107 -13.39047 -13.05669 -12.90324 -12.53313 -12.35880 -12.21646 -11.80701 -11.72361 -11.55647 -11.31290 -11.23425 -11.07700 -10.98509 -10.68731 -10.64922 -10.36819 -10.02699 -9.82881 -9.49190 -9.23463 -9.11335 -9.09273 -7.85642 -7.16437 -7.09031 -6.62149 -4.29607 1.12140 2.85165 3.02475 3.04223 3.10813 3.14350 3.23013 3.26500 4.00049 4.42641 4.69953 4.75098 4.83516 5.21047 5.34370 5.38973 5.52399 5.58506 5.66182 5.71416 5.77117 5.96341 6.06520 6.09178 6.16413 6.21141 6.24381 6.43145 6.45252 6.48887 6.66562 6.80794 6.93081 7.03109 7.16575 7.28347 7.38640 7.55227 7.62513 7.75592 7.99806 8.08145 8.13732 8.16142 8.38115 8.71736 8.98312 9.05827 10.31648 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.018463 B = 0.004192 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.211659 B = 6678.071075 C = 7632.377764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.006 4.006 3 C -0.199 4.199 4 C 0.503 3.497 5 O -0.486 6.486 6 O -0.525 6.525 7 C 0.066 3.934 8 N -0.506 5.506 9 C 0.063 3.937 10 C -0.046 4.046 11 C -0.163 4.163 12 C 0.109 3.891 13 C -0.461 4.461 14 H 0.077 0.923 15 C 0.074 3.926 16 N -0.805 5.805 17 Si 0.908 3.092 18 H -0.265 1.265 19 H -0.280 1.280 20 H -0.266 1.266 21 C -0.158 4.158 22 C -0.110 4.110 23 C -0.232 4.232 24 C -0.065 4.065 25 C 0.099 3.901 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.135 0.865 30 H 0.408 0.592 31 H 0.107 0.893 32 H 0.033 0.967 33 H 0.027 0.973 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.278 0.722 38 H 0.118 0.882 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.537 9.815 -12.346 15.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.007 4.007 3 C -0.219 4.219 4 C 0.348 3.652 5 O -0.375 6.375 6 O -0.337 6.337 7 C -0.061 4.061 8 N -0.229 5.229 9 C -0.064 4.064 10 C -0.083 4.083 11 C -0.164 4.164 12 C 0.107 3.893 13 C -0.491 4.491 14 H 0.095 0.905 15 C -0.142 4.142 16 N -0.432 5.432 17 Si 0.733 3.267 18 H -0.190 1.190 19 H -0.205 1.205 20 H -0.191 1.191 21 C -0.178 4.178 22 C -0.129 4.129 23 C -0.251 4.251 24 C -0.065 4.065 25 C -0.029 4.029 26 H 0.109 0.891 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.152 0.848 30 H 0.265 0.735 31 H 0.124 0.876 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.136 0.864 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -1.665 9.709 -11.912 15.457 hybrid contribution 0.787 -0.946 0.136 1.238 sum -0.878 8.763 -11.776 14.705 Atomic orbital electron populations 1.21167 0.90558 1.03255 1.03725 1.22594 0.96034 0.94793 0.87282 1.21527 0.90092 0.99151 1.11162 1.21210 0.89208 0.80624 0.74164 1.90950 1.71181 1.32613 1.42722 1.84602 1.27023 1.37725 1.84345 1.21648 1.00777 0.92087 0.91609 1.62242 1.11161 1.34556 1.14979 1.22143 0.95412 0.90057 0.98804 1.20108 0.96326 1.00839 0.91061 1.19412 0.93295 1.08572 0.95145 1.17548 0.93434 0.89005 0.89326 1.19506 0.93593 1.15449 1.20545 0.90509 1.25857 0.97772 0.95410 0.95143 1.69793 1.28662 1.17686 1.27067 0.86380 0.82324 0.78586 0.79447 1.18987 1.20496 1.19109 1.21296 0.92662 1.03544 1.00286 1.20582 0.96956 1.00035 0.95289 1.20194 0.96574 1.12296 0.96076 1.18921 0.94029 1.00038 0.93556 1.21040 0.90101 0.97967 0.93750 0.89118 0.90912 0.90897 0.84752 0.73464 0.87552 0.94930 0.95430 0.91312 0.92224 0.91337 0.91128 0.86417 0.89567 0.89841 0.90935 0.95417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 9.10 36.01 0.33 -0.88 16 2 C -0.01 -0.07 5.12 -101.14 -0.52 -0.59 16 3 C -0.20 -2.32 9.75 -37.85 -0.37 -2.69 16 4 C 0.50 6.66 8.11 34.26 0.28 6.94 16 5 O -0.49 -7.91 13.59 -19.29 -0.26 -8.17 16 6 O -0.52 -5.52 13.44 -40.77 -0.55 -6.07 16 7 C 0.07 0.94 4.12 -4.97 -0.02 0.92 16 8 N -0.51 -9.02 4.11 -237.61 -0.98 -9.99 16 9 C 0.06 1.18 5.58 -3.73 -0.02 1.16 16 10 C -0.05 -1.01 4.95 -27.94 -0.14 -1.15 16 11 C -0.16 -4.02 5.83 -103.92 -0.61 -4.62 16 12 C 0.11 2.94 5.55 -106.74 -0.59 2.35 16 13 C -0.46 -12.30 8.04 -37.74 -0.30 -12.61 16 14 H 0.08 1.98 7.12 -52.49 -0.37 1.61 16 15 C 0.07 1.89 5.26 -17.34 -0.09 1.80 16 16 N -0.81 -21.24 10.86 55.55 0.60 -20.64 16 17 Si 0.91 19.16 29.57 -169.99 -5.03 14.13 16 18 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 19 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 C -0.16 -4.22 8.64 -38.94 -0.34 -4.55 16 22 C -0.11 -2.65 10.02 -39.74 -0.40 -3.05 16 23 C -0.23 -5.26 9.65 -39.17 -0.38 -5.64 16 24 C -0.07 -1.48 5.79 -104.66 -0.61 -2.09 16 25 C 0.10 1.82 4.67 -5.15 -0.02 1.79 16 26 H 0.09 0.91 6.55 -51.93 -0.34 0.57 16 27 H 0.07 0.51 8.05 -51.93 -0.42 0.09 16 28 H 0.07 0.62 8.07 -51.93 -0.42 0.21 16 29 H 0.13 1.23 8.04 -52.48 -0.42 0.81 16 30 H 0.41 2.67 9.11 45.56 0.42 3.08 16 31 H 0.11 1.59 5.35 -51.93 -0.28 1.32 16 32 H 0.03 0.43 8.01 -51.93 -0.42 0.02 16 33 H 0.03 0.51 8.05 -51.93 -0.42 0.09 16 34 H 0.07 1.19 7.87 -51.93 -0.41 0.78 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.07 1.52 7.41 -51.93 -0.38 1.14 16 37 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 38 H 0.12 3.24 6.26 -52.49 -0.33 2.91 16 39 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 40 H 0.08 1.66 8.06 -52.48 -0.42 1.24 16 41 H 0.07 1.22 5.33 -51.93 -0.28 0.94 16 42 H 0.03 0.49 8.08 -51.93 -0.42 0.07 16 LS Contribution 338.93 15.07 5.11 5.11 Total: -1.00 -30.80 338.93 -9.79 -40.59 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -4.89 Total: 7.94 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -3.80 Total: -22.90 kcal Atomic # 7 Polarization: -30.26 SS G_CDS: -0.37 Total: -30.63 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.81 Total: -14.24 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.80 -9.79 -40.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588948978.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.913 kcal (2) G-P(sol) polarization free energy of solvation -30.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds