Wall clock time and date at job start Tue Mar 31 2020 07:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33080 * 120.00451 * 2 1 4 4 C 1.46943 * 120.00430 * 170.72923 * 3 2 1 5 5 O 1.21538 * 120.00002 * 354.07637 * 4 3 2 6 6 O 1.34800 * 120.00301 * 174.08007 * 4 3 2 7 7 C 1.50704 * 119.99785 * 180.02562 * 2 1 3 8 8 N 1.46907 * 109.46844 * 273.90812 * 7 2 1 9 9 C 1.47170 * 110.99572 * 189.01804 * 8 7 2 10 10 C 1.52896 * 108.45160 * 165.53329 * 9 8 7 11 11 C 1.50686 * 109.98997 * 50.26113 * 10 9 8 12 12 C 1.41112 * 118.49651 * 163.31790 * 11 10 9 13 13 C 1.41402 * 120.08207 * 359.44661 * 12 11 10 14 14 H 1.08001 * 119.99958 * 29.75845 * 13 12 11 15 15 C 1.39945 * 119.99940 * 209.76014 * 13 12 11 16 16 N 1.30823 * 120.00094 * 9.97526 * 15 13 12 17 17 Si 1.86802 * 119.99749 * 189.97028 * 15 13 12 18 18 H 1.48504 * 109.46749 * 60.00312 * 17 15 13 19 19 H 1.48505 * 109.46966 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47056 * 300.00321 * 17 15 13 21 21 C 1.40533 * 119.84099 * 179.44958 * 12 11 10 22 22 C 1.37640 * 119.53938 * 0.12070 * 21 12 11 23 23 C 1.38401 * 120.13829 * 0.04430 * 22 21 12 24 24 C 1.37204 * 121.80455 * 343.06079 * 11 10 9 25 25 C 1.46617 * 110.99805 * 66.04977 * 8 7 2 26 26 H 1.08997 * 109.46752 * 270.00109 * 1 2 3 27 27 H 1.09000 * 109.47013 * 29.99705 * 1 2 3 28 28 H 1.09001 * 109.47032 * 149.99636 * 1 2 3 29 29 H 1.08004 * 119.99641 * 350.73531 * 3 2 1 30 30 H 0.96707 * 117.00248 * 180.02562 * 6 4 3 31 31 H 1.09003 * 109.47024 * 153.91063 * 7 2 1 32 32 H 1.08994 * 109.47461 * 33.90724 * 7 2 1 33 33 H 1.09003 * 109.63861 * 285.21852 * 9 8 7 34 34 H 1.08995 * 109.63946 * 45.84297 * 9 8 7 35 35 H 1.09002 * 109.38461 * 290.10510 * 10 9 8 36 36 H 1.08997 * 109.30181 * 170.36644 * 10 9 8 37 37 H 0.96996 * 119.99557 * 179.97438 * 16 15 13 38 38 H 1.08001 * 120.23233 * 180.09692 * 21 12 11 39 39 H 1.07993 * 119.93164 * 180.02562 * 22 21 12 40 40 H 1.08003 * 119.53474 * 179.97438 * 23 22 21 41 41 H 1.09002 * 109.26457 * 296.20951 * 25 8 7 42 42 H 1.08997 * 109.26562 * 55.70014 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1725 1.1525 0.0000 4 6 3.6275 1.1608 0.2050 5 8 4.2082 0.1294 0.4813 6 8 4.3184 2.3122 0.0867 7 6 2.2605 -1.3052 -0.0006 8 7 2.4235 -1.7770 1.3811 9 6 3.3345 -2.9314 1.4400 10 6 3.7487 -3.1471 2.8959 11 6 2.5284 -3.1781 3.7794 12 6 2.6516 -3.7137 5.0791 13 6 3.8962 -4.2170 5.5232 14 1 4.8154 -3.8002 5.1388 15 6 3.9368 -5.2551 6.4608 16 7 2.8392 -5.8912 6.7804 17 14 5.5583 -5.7327 7.2559 18 1 6.1129 -4.5659 7.9883 19 1 5.3333 -6.8523 8.2052 20 1 6.5176 -6.1597 6.2059 21 6 1.5345 -3.7457 5.9311 22 6 0.3277 -3.2552 5.4865 23 6 0.2173 -2.7352 4.2086 24 6 1.3156 -2.6975 3.3544 25 6 1.1281 -2.1224 1.9746 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6431 2.0817 -0.1506 30 1 5.2737 2.2678 0.2302 31 1 3.2415 -1.1582 -0.4525 32 1 1.7036 -2.0460 -0.5742 33 1 2.8241 -3.8201 1.0688 34 1 4.2179 -2.7322 0.8334 35 1 4.4025 -2.3337 3.2104 36 1 4.2819 -4.0939 2.9823 37 1 2.8675 -6.6110 7.4299 38 1 1.6220 -4.1528 6.9276 39 1 -0.5348 -3.2763 6.1360 40 1 -0.7344 -2.3533 3.8697 41 1 0.5117 -1.2257 2.0395 42 1 0.6281 -2.8575 1.3440 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588948978.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:13 Heat of formation + Delta-G solvation = -67.031902 kcal Electronic energy + Delta-G solvation = -24606.846659 eV Core-core repulsion = 21129.869315 eV Total energy + Delta-G solvation = -3476.977344 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.21444 -40.44930 -38.45703 -36.92290 -35.85378 -35.37604 -33.22338 -31.84816 -30.30831 -29.21937 -27.61930 -26.98258 -24.65460 -23.80242 -23.15612 -22.28540 -20.09965 -19.51176 -18.95502 -18.80457 -17.40462 -17.27482 -16.67267 -16.58044 -16.25897 -15.90648 -15.48392 -15.06095 -14.99933 -14.67550 -14.34660 -14.16942 -13.99485 -13.68110 -13.41183 -13.32665 -13.02951 -12.94450 -12.91510 -12.70608 -12.58860 -12.43474 -12.27265 -12.16294 -12.01686 -11.81440 -11.18589 -11.03278 -10.97699 -10.84876 -10.19176 -9.28756 -9.08483 -8.90008 -8.53536 -6.31043 0.19407 1.01416 1.12416 1.36507 1.47589 1.52437 2.08776 2.22070 2.40140 2.78673 3.15286 3.70767 3.75599 3.97792 4.05907 4.23379 4.36335 4.47066 4.52245 4.53993 4.59052 4.60735 4.66399 4.72754 4.75313 4.81046 4.91776 5.05222 5.14188 5.15425 5.21329 5.27848 5.34192 5.38321 5.55381 5.62574 5.80789 5.81682 6.02365 6.12748 6.21977 6.22688 6.27703 6.51660 6.76414 7.01330 7.11042 7.19488 8.41873 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.018463 B = 0.004192 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.211659 B = 6678.071075 C = 7632.377764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.012 4.012 3 C -0.200 4.200 4 C 0.499 3.501 5 O -0.526 6.526 6 O -0.519 6.519 7 C 0.066 3.934 8 N -0.519 5.519 9 C 0.073 3.927 10 C -0.039 4.039 11 C -0.183 4.183 12 C 0.075 3.925 13 C -0.492 4.492 14 H 0.071 0.929 15 C 0.033 3.967 16 N -0.837 5.837 17 Si 0.978 3.022 18 H -0.263 1.263 19 H -0.268 1.268 20 H -0.261 1.261 21 C -0.189 4.189 22 C -0.117 4.117 23 C -0.228 4.228 24 C -0.072 4.072 25 C 0.105 3.895 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.163 0.837 30 H 0.423 0.577 31 H 0.098 0.902 32 H 0.047 0.953 33 H 0.029 0.971 34 H 0.079 0.921 35 H 0.044 0.956 36 H 0.054 0.946 37 H 0.283 0.717 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.120 0.880 41 H 0.097 0.903 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.644 11.251 -14.052 18.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.013 4.013 3 C -0.220 4.220 4 C 0.345 3.655 5 O -0.417 6.417 6 O -0.333 6.333 7 C -0.060 4.060 8 N -0.242 5.242 9 C -0.054 4.054 10 C -0.077 4.077 11 C -0.185 4.185 12 C 0.073 3.927 13 C -0.523 4.523 14 H 0.089 0.911 15 C -0.180 4.180 16 N -0.465 5.465 17 Si 0.799 3.201 18 H -0.187 1.187 19 H -0.193 1.193 20 H -0.185 1.185 21 C -0.208 4.208 22 C -0.135 4.135 23 C -0.247 4.247 24 C -0.073 4.073 25 C -0.022 4.022 26 H 0.105 0.895 27 H 0.118 0.882 28 H 0.099 0.901 29 H 0.181 0.819 30 H 0.284 0.716 31 H 0.115 0.885 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.115 0.885 39 H 0.127 0.873 40 H 0.138 0.862 41 H 0.114 0.886 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.776 11.178 -13.638 17.851 hybrid contribution 1.086 -1.277 0.591 1.778 sum -1.690 9.901 -13.047 16.465 Atomic orbital electron populations 1.21206 0.88237 1.05112 1.03862 1.22725 0.97499 0.93531 0.87547 1.21839 0.89266 1.00360 1.10505 1.21649 0.90090 0.80486 0.73237 1.90943 1.72093 1.33977 1.44682 1.84569 1.28483 1.36508 1.83709 1.21655 1.01208 0.93703 0.89464 1.62161 1.10685 1.33771 1.17632 1.21970 0.96341 0.90835 0.96295 1.19998 0.95119 0.99472 0.93086 1.19809 0.95178 1.08600 0.94875 1.17951 0.93914 0.90123 0.90684 1.19691 0.93542 1.16741 1.22298 0.91063 1.26673 1.01379 0.94849 0.95114 1.69870 1.30686 1.18233 1.27690 0.85315 0.77770 0.78429 0.78540 1.18736 1.19273 1.18521 1.21260 0.94114 1.05643 0.99824 1.20885 0.96703 0.99411 0.96523 1.20632 0.98081 1.10757 0.95240 1.19482 0.93159 0.98760 0.95866 1.21032 0.90845 0.99055 0.91257 0.89512 0.88248 0.90056 0.81903 0.71618 0.88453 0.93459 0.95302 0.90232 0.93729 0.92767 0.90608 0.88470 0.87341 0.86177 0.88553 0.93990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 9.10 71.24 0.65 -1.17 16 2 C -0.01 -0.24 5.12 -17.60 -0.09 -0.33 16 3 C -0.20 -4.04 9.75 23.40 0.23 -3.81 16 4 C 0.50 12.35 8.11 70.10 0.57 12.92 16 5 O -0.53 -16.73 13.59 19.71 0.27 -16.46 16 6 O -0.52 -9.91 13.44 -57.12 -0.77 -10.67 16 7 C 0.07 1.74 4.12 85.56 0.35 2.09 16 8 N -0.52 -17.65 4.11 -905.68 -3.72 -21.38 16 9 C 0.07 2.72 5.58 86.22 0.48 3.20 16 10 C -0.04 -1.78 4.95 29.81 0.15 -1.63 16 11 C -0.18 -9.25 5.83 -19.41 -0.11 -9.36 16 12 C 0.08 4.24 5.55 -21.24 -0.12 4.12 16 13 C -0.49 -27.62 8.04 23.46 0.19 -27.43 16 14 H 0.07 3.90 7.12 -2.91 -0.02 3.88 16 15 C 0.03 1.72 5.26 85.26 0.45 2.17 16 16 N -0.84 -45.85 10.86 21.83 0.24 -45.62 16 17 Si 0.98 40.34 29.57 68.60 2.03 42.37 16 18 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 19 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 20 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 21 C -0.19 -10.43 8.64 22.69 0.20 -10.24 16 22 C -0.12 -5.62 10.02 22.17 0.22 -5.40 16 23 C -0.23 -9.95 9.65 22.54 0.22 -9.73 16 24 C -0.07 -3.22 5.79 -19.89 -0.12 -3.34 16 25 C 0.11 3.60 4.67 85.60 0.40 4.00 16 26 H 0.09 1.35 6.55 -2.39 -0.02 1.33 16 27 H 0.10 0.90 8.05 -2.39 -0.02 0.88 16 28 H 0.08 1.03 8.07 -2.39 -0.02 1.01 16 29 H 0.16 2.30 8.04 -2.91 -0.02 2.27 16 30 H 0.42 4.90 9.11 -74.05 -0.67 4.22 16 31 H 0.10 2.78 5.35 -2.39 -0.01 2.77 16 32 H 0.05 1.11 8.01 -2.39 -0.02 1.09 16 33 H 0.03 1.05 8.05 -2.39 -0.02 1.03 16 34 H 0.08 2.74 7.87 -2.39 -0.02 2.73 16 35 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.05 2.54 7.41 -2.39 -0.02 2.52 16 37 H 0.28 14.17 8.30 -92.71 -0.77 13.40 16 38 H 0.10 5.65 6.26 -2.91 -0.02 5.63 16 39 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 40 H 0.12 4.33 8.06 -2.91 -0.02 4.30 16 41 H 0.10 2.86 5.33 -2.39 -0.01 2.85 16 42 H 0.04 1.35 8.08 -2.39 -0.02 1.33 16 Total: -1.00 -69.29 338.93 2.08 -67.21 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: 0.37 Total: 28.49 kcal Atomic # 6 Polarization: -47.61 SS G_CDS: 3.66 Total: -43.95 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: -3.49 Total: -66.99 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.50 Total: -27.13 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -69.29 2.08 -67.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588948978.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.182 kcal (2) G-P(sol) polarization free energy of solvation -69.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds