Wall clock time and date at job start Tue Mar 31 2020 07:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.77851 * 2 1 4 4 C 1.53224 * 109.62287 * 239.52666 * 2 1 3 5 5 C 1.52961 * 109.40225 * 185.65914 * 4 2 1 6 6 H 1.08999 * 109.41234 * 303.56296 * 5 4 2 7 7 C 1.50696 * 109.41547 * 183.70405 * 5 4 2 8 8 O 1.21291 * 119.99932 * 359.86007 * 7 5 4 9 9 N 1.34773 * 120.00450 * 179.85963 * 7 5 4 10 10 C 1.39934 * 120.00362 * 175.47191 * 9 7 5 11 11 C 1.39301 * 119.94776 * 35.65574 * 10 9 7 12 12 C 1.38486 * 120.42858 * 180.02562 * 11 10 9 13 13 C 1.37686 * 120.32265 * 359.97438 * 12 11 10 14 14 C 1.40746 * 119.88352 * 0.02562 * 13 12 11 15 15 C 1.41417 * 120.20755 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00080 * 24.59016 * 15 14 13 17 17 C 1.39932 * 119.99818 * 204.59400 * 15 14 13 18 18 N 1.30832 * 119.99705 * 15.37156 * 17 15 14 19 19 Si 1.86792 * 120.00094 * 195.37506 * 17 15 14 20 20 H 1.48506 * 109.47222 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47171 * 119.99922 * 19 17 15 22 22 H 1.48499 * 109.47437 * 239.99919 * 19 17 15 23 23 C 1.38242 * 119.94911 * 215.65364 * 10 9 7 24 24 C 1.52957 * 109.75910 * 63.63145 * 5 4 2 25 25 C 1.53232 * 109.39971 * 296.29692 * 24 5 4 26 26 C 1.51266 * 108.48804 * 54.73301 * 25 24 5 27 27 O 1.20759 * 120.85062 * 128.62869 * 26 25 24 28 28 H 1.08991 * 109.47384 * 180.47650 * 1 2 3 29 29 H 1.09005 * 109.46977 * 300.47812 * 1 2 3 30 30 H 1.09003 * 109.47002 * 60.47292 * 1 2 3 31 31 H 1.09004 * 109.48574 * 65.68042 * 4 2 1 32 32 H 1.09002 * 109.48423 * 305.63299 * 4 2 1 33 33 H 0.97003 * 119.99675 * 355.46698 * 9 7 5 34 34 H 1.07999 * 119.78239 * 0.27664 * 11 10 9 35 35 H 1.07993 * 119.83852 * 180.02562 * 12 11 10 36 36 H 1.07999 * 120.05966 * 179.97438 * 13 12 11 37 37 H 0.97005 * 119.99594 * 179.97438 * 18 17 15 38 38 H 1.08004 * 120.16236 * 359.97438 * 23 10 9 39 39 H 1.09001 * 109.48159 * 56.35101 * 24 5 4 40 40 H 1.09001 * 109.48149 * 176.38702 * 24 5 4 41 41 H 1.09004 * 109.68662 * 295.01234 * 25 24 5 42 42 H 1.09004 * 109.77790 * 174.51088 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0446 -0.7319 -1.2439 5 6 3.5676 -0.8528 -1.1687 6 1 4.0048 0.1397 -1.0597 7 6 4.0825 -1.4909 -2.4331 8 8 3.3071 -1.8188 -3.3062 9 7 5.4046 -1.6972 -2.5937 10 6 5.8748 -2.3747 -3.7243 11 6 5.2414 -2.2007 -4.9527 12 6 5.6980 -2.8666 -6.0778 13 6 6.7844 -3.7083 -5.9944 14 6 7.4345 -3.8939 -4.7599 15 6 8.5514 -4.7563 -4.6665 16 1 9.1513 -4.9596 -5.5412 17 6 8.8791 -5.3463 -3.4407 18 7 8.0081 -5.3533 -2.4645 19 14 10.5601 -6.1239 -3.1982 20 1 11.3547 -5.9842 -4.4451 21 1 11.2651 -5.4413 -2.0836 22 1 10.3974 -7.5636 -2.8731 23 6 6.9672 -3.2155 -3.6204 24 6 3.9592 -1.7154 0.0322 25 6 3.5182 -1.0196 1.3242 26 6 2.0381 -0.7226 1.2279 27 8 1.2815 -1.0539 2.1089 28 1 -0.3634 -1.0275 0.0085 29 1 -0.3633 0.5213 0.8857 30 1 -0.3633 0.5065 -0.8942 31 1 1.7681 -0.1706 -2.1365 32 1 1.6028 -1.7274 -1.2888 33 1 6.0303 -1.3761 -1.9257 34 1 4.3912 -1.5391 -5.0289 35 1 5.1999 -2.7244 -7.0255 36 1 7.1367 -4.2258 -6.8744 37 1 8.2352 -5.7626 -1.6149 38 1 7.4593 -3.3507 -2.6686 39 1 3.4711 -2.6871 -0.0436 40 1 5.0406 -1.8517 0.0446 41 1 4.0713 -0.0883 1.4468 42 1 3.7062 -1.6718 2.1771 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334737607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:37 Heat of formation + Delta-G solvation = -75.789649 kcal Electronic energy + Delta-G solvation = -24034.466827 eV Core-core repulsion = 20557.109718 eV Total energy + Delta-G solvation = -3477.357108 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.64200 -39.48155 -37.42508 -36.12696 -34.34120 -33.45623 -32.97451 -30.10103 -29.50043 -28.27892 -26.28443 -25.25959 -23.22783 -22.52118 -21.25050 -20.70685 -19.47787 -19.29041 -17.44919 -17.03401 -16.12123 -15.84961 -15.74638 -15.17374 -14.96714 -14.67955 -14.51299 -14.22688 -13.86099 -13.37414 -13.07183 -12.90962 -12.76891 -12.54232 -12.43936 -12.24815 -11.92764 -11.74251 -11.62378 -11.30219 -11.19734 -11.14897 -11.06633 -10.89554 -10.72501 -10.48143 -10.03700 -9.91575 -9.51310 -9.45955 -9.14911 -8.88133 -7.39133 -7.00218 -6.74098 -4.39821 1.76400 2.56192 2.81875 3.05261 3.10608 3.16112 3.25865 3.61644 3.83239 3.91287 4.36392 4.51144 4.61094 4.65929 4.70936 4.92149 4.98551 5.12915 5.18352 5.26496 5.40606 5.57286 5.61850 5.65949 5.72029 5.75999 5.83549 5.97801 6.05279 6.12790 6.26289 6.65284 6.67231 6.87997 7.04067 7.05629 7.24669 7.30363 7.59333 7.67422 7.92327 8.01755 8.12805 8.30296 8.54625 8.73496 8.87205 8.93859 10.17536 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.019344 B = 0.003549 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.156339 B = 7886.983989 C = 9101.491448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.141 4.141 3 H 0.105 0.895 4 C -0.089 4.089 5 C -0.111 4.111 6 H 0.101 0.899 7 C 0.511 3.489 8 O -0.523 6.523 9 N -0.662 5.662 10 C 0.140 3.860 11 C -0.226 4.226 12 C -0.089 4.089 13 C -0.227 4.227 14 C 0.118 3.882 15 C -0.462 4.462 16 H 0.078 0.922 17 C 0.075 3.925 18 N -0.799 5.799 19 Si 0.908 3.092 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.275 1.275 23 C -0.182 4.182 24 C -0.107 4.107 25 C -0.167 4.167 26 C 0.363 3.637 27 O -0.456 6.456 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.399 0.601 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.278 0.722 38 H 0.126 0.874 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.907 10.365 7.877 14.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 H 0.123 0.877 4 C -0.127 4.127 5 C -0.133 4.133 6 H 0.119 0.881 7 C 0.297 3.703 8 O -0.399 6.399 9 N -0.305 5.305 10 C 0.048 3.952 11 C -0.247 4.247 12 C -0.108 4.108 13 C -0.247 4.247 14 C 0.115 3.885 15 C -0.492 4.492 16 H 0.096 0.904 17 C -0.142 4.142 18 N -0.425 5.425 19 Si 0.732 3.268 20 H -0.184 1.184 21 H -0.198 1.198 22 H -0.201 1.201 23 C -0.203 4.203 24 C -0.145 4.145 25 C -0.205 4.205 26 C 0.239 3.761 27 O -0.329 6.329 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.234 0.766 34 H 0.124 0.876 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.143 0.857 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.119 0.881 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.927 9.851 7.989 14.451 hybrid contribution 1.189 -0.316 0.498 1.327 sum -5.738 9.536 8.487 13.996 Atomic orbital electron populations 1.21643 0.93013 1.02863 1.02118 1.21920 0.98017 1.01116 0.94929 0.87726 1.21402 0.92738 1.02044 0.96488 1.21400 0.97660 1.00759 0.93448 0.88097 1.20408 0.82425 0.79261 0.88203 1.90703 1.55932 1.50152 1.43101 1.43435 1.07027 1.56482 1.23575 1.17648 0.96970 0.95532 0.85014 1.20430 1.04467 1.08306 0.91473 1.20445 0.96595 0.97432 0.96304 1.21053 0.99730 1.05778 0.98125 1.17377 0.91124 0.89730 0.90296 1.19576 1.10294 1.23951 0.95384 0.90376 1.25886 0.98015 0.94829 0.95445 1.69829 1.33502 1.34982 1.04153 0.86272 0.82240 0.78916 0.79346 1.18449 1.19810 1.20054 1.21138 0.99662 0.98719 1.00791 1.21527 1.02796 0.99032 0.91152 1.22318 0.94904 1.03258 1.00008 1.24961 0.90896 0.74549 0.85736 1.90386 1.60156 1.42588 1.39736 0.92133 0.92097 0.91763 0.89641 0.90522 0.76635 0.87646 0.89087 0.88912 0.91124 0.85683 0.90489 0.89701 0.88122 0.88908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.58 37.16 0.32 -0.96 16 2 C -0.14 -1.27 3.01 -91.37 -0.27 -1.54 16 3 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.09 -0.96 3.83 -26.64 -0.10 -1.06 16 5 C -0.11 -1.22 2.42 -91.82 -0.22 -1.44 16 6 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 7 C 0.51 8.42 6.99 -10.99 -0.08 8.34 16 8 O -0.52 -10.75 13.41 5.55 0.07 -10.68 16 9 N -0.66 -11.59 5.16 -9.91 -0.05 -11.64 16 10 C 0.14 3.16 6.28 -83.76 -0.53 2.64 16 11 C -0.23 -5.26 8.69 -39.09 -0.34 -5.60 16 12 C -0.09 -2.06 10.02 -39.69 -0.40 -2.46 16 13 C -0.23 -5.58 9.79 -38.84 -0.38 -5.96 16 14 C 0.12 3.08 5.58 -106.84 -0.60 2.48 16 15 C -0.46 -11.98 9.06 -37.74 -0.34 -12.32 16 16 H 0.08 1.96 7.89 -52.49 -0.41 1.54 16 17 C 0.07 1.83 5.19 -17.34 -0.09 1.74 16 18 N -0.80 -19.96 10.82 55.55 0.60 -19.36 16 19 Si 0.91 18.18 29.59 -169.99 -5.03 13.15 16 20 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 21 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 22 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 23 C -0.18 -4.49 8.61 -38.69 -0.33 -4.83 16 24 C -0.11 -1.08 5.14 -26.63 -0.14 -1.22 16 25 C -0.17 -1.42 6.17 -27.49 -0.17 -1.59 16 26 C 0.36 3.82 6.58 -28.48 -0.19 3.63 16 27 O -0.46 -6.28 16.88 6.00 0.10 -6.18 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.55 8.07 -51.93 -0.42 0.13 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.95 8.00 -51.93 -0.42 0.54 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.40 5.62 8.33 -40.82 -0.34 5.28 16 34 H 0.11 2.43 6.26 -52.49 -0.33 2.10 16 35 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 36 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 37 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 38 H 0.13 3.12 6.07 -52.48 -0.32 2.80 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 0.80 7.55 -51.93 -0.39 0.41 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 344.82 15.07 5.20 5.20 Total: -1.00 -31.03 344.82 -8.95 -39.98 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -5.99 Total: 9.69 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -3.86 Total: -20.15 kcal Atomic # 7 Polarization: -31.55 SS G_CDS: 0.55 Total: -31.00 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: 0.18 Total: -16.86 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.03 -8.95 -39.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334737607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.806 kcal (2) G-P(sol) polarization free energy of solvation -31.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds