Wall clock time and date at job start Tue Mar 31 2020 08:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46781 * 2 1 4 4 C 1.46508 * 119.99872 * 90.00180 * 3 2 1 5 5 C 1.50701 * 109.47047 * 89.99776 * 4 3 2 6 6 H 1.08003 * 119.99779 * 0.02562 * 5 4 3 7 7 C 1.37868 * 119.99859 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00268 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00177 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47065 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47614 * 119.99737 * 9 7 5 12 12 H 1.48502 * 109.47317 * 239.99857 * 9 7 5 13 13 C 1.34769 * 120.00128 * 270.00021 * 3 2 1 14 14 O 1.21543 * 120.00512 * 180.02562 * 13 3 2 15 15 C 1.47608 * 120.00192 * 0.02562 * 13 3 2 16 16 C 1.34380 * 120.00353 * 186.82295 * 15 13 3 17 17 C 1.47480 * 120.00068 * 20.91332 * 16 15 13 18 18 O 1.21554 * 119.99962 * 23.36304 * 17 16 15 19 19 C 1.47725 * 120.00314 * 203.36192 * 17 16 15 20 20 C 1.39742 * 120.15294 * 359.72930 * 19 17 16 21 21 C 1.37899 * 119.83315 * 179.74550 * 20 19 17 22 22 C 1.38414 * 120.16229 * 0.55210 * 21 20 19 23 23 C 1.50694 * 119.84119 * 179.72378 * 22 21 20 24 24 C 1.38407 * 120.31523 * 359.69689 * 22 21 20 25 25 C 1.37905 * 120.16143 * 0.02562 * 24 22 21 26 26 H 1.09000 * 109.47018 * 299.99661 * 1 2 3 27 27 H 1.08995 * 109.47362 * 60.00253 * 1 2 3 28 28 H 1.09002 * 109.46532 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47018 * 240.00339 * 2 1 3 30 30 H 1.08995 * 109.47362 * 119.99747 * 2 1 3 31 31 H 1.08997 * 109.46799 * 209.99774 * 4 3 2 32 32 H 1.09006 * 109.46777 * 329.99954 * 4 3 2 33 33 H 0.96998 * 120.00144 * 180.02562 * 8 7 5 34 34 H 1.08001 * 119.99710 * 6.82241 * 15 13 3 35 35 H 1.08001 * 119.99673 * 200.92282 * 16 15 13 36 36 H 1.07997 * 120.07898 * 359.97438 * 20 19 17 37 37 H 1.08007 * 119.91792 * 180.24559 * 21 20 19 38 38 H 1.09002 * 109.47143 * 269.97490 * 23 22 21 39 39 H 1.08998 * 109.47316 * 29.97110 * 23 22 21 40 40 H 1.08995 * 109.47484 * 149.97629 * 23 22 21 41 41 H 1.08000 * 119.91821 * 180.02562 * 24 22 21 42 42 H 1.07995 * 120.07921 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2688 5 6 3.6857 1.8351 1.7038 6 1 4.3428 1.2310 1.0957 7 6 4.1490 2.3897 2.8780 8 7 3.3490 3.1257 3.6182 9 14 5.9134 2.0968 3.4169 10 1 6.6011 1.2416 2.4163 11 1 6.6203 3.3982 3.5258 12 1 5.9214 1.4172 4.7372 13 6 2.2429 2.0166 -1.1671 14 8 2.6484 3.1624 -1.1672 15 6 1.9964 1.3211 -2.4455 16 6 2.3482 1.9017 -3.6052 17 6 3.3629 2.9719 -3.6159 18 8 4.1730 3.0505 -2.7132 19 6 3.3947 3.9485 -4.7239 20 6 2.4685 3.8579 -5.7663 21 6 2.5008 4.7762 -6.7945 22 6 3.4548 5.7790 -6.8016 23 6 3.4875 6.7749 -7.9321 24 6 4.3786 5.8717 -5.7751 25 6 4.3547 4.9638 -4.7373 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.0954 3.1411 1.1384 32 1 1.5816 1.6877 2.0285 33 1 3.6751 3.5162 4.4440 34 1 1.5332 0.3454 -2.4488 35 1 1.8879 1.5846 -4.5293 36 1 1.7268 3.0728 -5.7647 37 1 1.7831 4.7098 -7.5989 38 1 4.1356 6.4028 -8.7255 39 1 2.4794 6.9150 -8.3222 40 1 3.8711 7.7273 -7.5663 41 1 5.1199 6.6570 -5.7869 42 1 5.0763 5.0372 -3.9373 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900326310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:51 Heat of formation + Delta-G solvation = -19.162370 kcal Electronic energy + Delta-G solvation = -23721.580565 eV Core-core repulsion = 20246.679000 eV Total energy + Delta-G solvation = -3474.901565 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.04474 -39.04906 -37.85822 -35.19577 -33.23624 -32.87177 -32.34782 -31.01919 -30.05103 -28.04207 -27.15492 -24.60879 -22.99930 -22.82644 -22.68173 -21.24990 -19.70294 -17.88775 -17.38407 -16.40388 -16.18633 -15.75402 -15.30404 -15.02211 -14.52210 -14.31666 -14.23053 -13.95303 -13.78240 -13.63630 -13.44316 -13.26484 -12.87200 -12.73597 -12.42420 -12.19088 -11.99473 -11.85772 -11.69337 -11.62196 -11.15516 -11.06522 -10.83760 -10.70816 -10.48819 -10.06102 -9.62906 -9.54692 -9.32459 -9.06134 -8.75742 -8.63113 -8.36835 -7.57466 -5.97529 -4.01112 0.57093 1.26522 1.32525 3.01132 3.35106 3.42717 3.48135 3.82829 3.96989 4.08598 4.20349 4.52041 4.64147 4.67006 4.86112 4.98483 5.04766 5.22435 5.31265 5.32673 5.35742 5.37530 5.46144 5.53334 5.59170 5.64451 5.75374 5.86781 5.92049 6.02387 6.09396 6.18606 6.25548 6.26996 6.41765 6.50479 6.52090 6.84164 7.12987 7.50623 7.61239 7.97120 8.00301 8.30969 8.46899 8.98561 9.17304 9.63590 11.10688 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.016086 B = 0.003648 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.266011 B = 7673.901375 C = 8942.582336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.590 5.590 4 C 0.247 3.753 5 C -0.520 4.520 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.897 5.897 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.521 3.479 14 O -0.514 6.514 15 C -0.117 4.117 16 C -0.171 4.171 17 C 0.404 3.596 18 O -0.389 6.389 19 C -0.150 4.150 20 C -0.076 4.076 21 C -0.136 4.136 22 C -0.068 4.068 23 C -0.117 4.117 24 C -0.133 4.133 25 C -0.060 4.060 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.043 0.957 32 H 0.032 0.968 33 H 0.262 0.738 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.126 0.874 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.186 -1.547 -21.984 22.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.020 4.020 3 N -0.322 5.322 4 C 0.128 3.872 5 C -0.559 4.559 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.536 5.536 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.211 1.211 13 C 0.307 3.693 14 O -0.390 6.390 15 C -0.139 4.139 16 C -0.191 4.191 17 C 0.278 3.722 18 O -0.261 6.261 19 C -0.151 4.151 20 C -0.094 4.094 21 C -0.154 4.154 22 C -0.068 4.068 23 C -0.173 4.173 24 C -0.151 4.151 25 C -0.078 4.078 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.156 0.844 35 H 0.160 0.840 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.144 0.856 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.525 -0.776 -21.271 21.761 hybrid contribution 0.728 -0.287 0.353 0.859 sum -3.796 -1.063 -20.918 21.286 Atomic orbital electron populations 1.22248 0.96755 1.01394 1.02427 1.21453 0.93472 0.84347 1.02683 1.48194 1.63290 1.13031 1.07733 1.19272 0.96316 0.93633 0.77953 1.21477 0.96850 1.31613 1.05948 0.92376 1.24923 0.97818 0.94982 0.96442 1.69945 1.35576 1.33739 1.14381 0.86444 0.84783 0.78069 0.78152 1.19768 1.20900 1.21050 1.18493 0.79662 0.87121 0.84005 1.90812 1.43535 1.17856 1.86827 1.23924 0.98097 0.98194 0.93672 1.23686 0.98095 0.98600 0.98756 1.20547 0.84708 0.82940 0.83987 1.90759 1.35552 1.67658 1.32092 1.20632 0.98419 0.98824 0.97241 1.21389 0.96991 0.98269 0.92790 1.20965 0.99494 0.95668 0.99224 1.20142 0.94824 0.95964 0.95909 1.20840 1.02694 0.97557 0.96247 1.21029 0.99642 0.99975 0.94415 1.21447 0.96627 0.92330 0.97369 0.91989 0.93026 0.92157 0.91754 0.89819 0.93910 0.95022 0.92878 0.84411 0.84028 0.85244 0.85709 0.90976 0.91397 0.91361 0.85633 0.84747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.10 1.71 5.80 -4.04 -0.02 1.69 16 3 N -0.59 -13.03 2.46 -176.26 -0.43 -13.46 16 4 C 0.25 6.71 5.16 -5.19 -0.03 6.68 16 5 C -0.52 -15.41 9.39 -34.44 -0.32 -15.74 16 6 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 9 Si 0.90 22.84 29.54 -169.99 -5.02 17.82 16 10 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 13 C 0.52 11.52 7.14 -12.44 -0.09 11.43 16 14 O -0.51 -13.74 12.60 -19.57 -0.25 -13.99 16 15 C -0.12 -1.85 9.10 -37.12 -0.34 -2.19 16 16 C -0.17 -2.42 9.28 -37.18 -0.34 -2.76 16 17 C 0.40 7.11 6.09 -31.94 -0.19 6.91 16 18 O -0.39 -8.86 13.61 -19.58 -0.27 -9.13 16 19 C -0.15 -2.20 5.88 -104.90 -0.62 -2.82 16 20 C -0.08 -0.85 9.45 -39.14 -0.37 -1.22 16 21 C -0.14 -1.33 9.68 -39.64 -0.38 -1.71 16 22 C -0.07 -0.68 5.89 -104.50 -0.62 -1.30 16 23 C -0.12 -0.80 10.00 36.00 0.36 -0.44 16 24 C -0.13 -1.53 9.68 -39.64 -0.38 -1.91 16 25 C -0.06 -0.86 9.60 -39.14 -0.38 -1.23 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.87 6.19 -51.93 -0.32 0.55 16 30 H 0.08 1.42 8.07 -51.93 -0.42 1.01 16 31 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 32 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 34 H 0.14 1.60 6.37 -52.49 -0.33 1.26 16 35 H 0.14 1.28 6.77 -52.49 -0.36 0.92 16 36 H 0.13 1.09 6.43 -52.49 -0.34 0.75 16 37 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 40 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 41 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 42 H 0.13 2.07 7.65 -52.49 -0.40 1.67 16 LS Contribution 358.59 15.07 5.40 5.40 Total: -1.00 -37.43 358.59 -9.16 -46.60 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -5.90 Total: -1.67 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -3.44 Total: -4.82 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.30 Total: -40.22 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.51 Total: -23.12 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -37.43 -9.16 -46.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900326310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.434 kcal (2) G-P(sol) polarization free energy of solvation -37.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds