Wall clock time and date at job start Tue Mar 31 2020 07:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 117.00091 * 2 1 4 4 O 1.20822 * 119.99980 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99627 * 179.97438 * 3 2 1 6 6 H 1.08993 * 109.74663 * 346.36791 * 5 3 2 7 7 C 1.50816 * 109.74817 * 107.05315 * 5 3 2 8 8 C 1.53862 * 111.59480 * 214.65939 * 7 5 3 9 9 C 1.54170 * 112.00860 * 319.11264 * 8 7 5 10 10 C 1.50758 * 112.60331 * 318.45720 * 9 8 7 11 11 C 1.54422 * 109.02622 * 93.01593 * 10 9 8 12 12 N 1.39779 * 111.77455 * 282.59414 * 11 10 9 13 13 C 1.46896 * 111.00319 * 189.12924 * 12 11 10 14 14 C 1.53003 * 109.47297 * 295.08715 * 13 12 11 15 15 C 1.52999 * 109.47126 * 184.02159 * 14 13 12 16 16 S 1.81001 * 109.46751 * 179.97438 * 15 14 13 17 17 C 1.76195 * 99.99814 * 180.02562 * 16 15 14 18 18 H 1.08006 * 120.00140 * 0.02562 * 17 16 15 19 19 C 1.38805 * 120.00192 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00073 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99739 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47045 * 90.00062 * 21 19 17 23 23 H 1.48497 * 109.46908 * 209.99934 * 21 19 17 24 24 H 1.48500 * 109.46877 * 329.99765 * 21 19 17 25 25 H 1.09002 * 109.47233 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47426 * 299.99923 * 1 2 3 27 27 H 1.08999 * 109.47050 * 59.99890 * 1 2 3 28 28 H 1.09001 * 109.04727 * 335.29023 * 7 5 3 29 29 H 1.08994 * 109.05248 * 94.18557 * 7 5 3 30 30 H 1.09001 * 108.98626 * 198.44042 * 8 7 5 31 31 H 1.09008 * 108.87440 * 79.70224 * 8 7 5 32 32 H 1.08998 * 108.85263 * 197.64866 * 9 8 7 33 33 H 1.08993 * 108.77157 * 79.20266 * 9 8 7 34 34 H 1.08999 * 109.54530 * 333.15071 * 10 9 8 35 35 H 1.08998 * 109.61731 * 212.92577 * 10 9 8 36 36 H 1.09000 * 109.02255 * 161.99663 * 11 10 9 37 37 H 1.09000 * 108.96028 * 43.14326 * 11 10 9 38 38 H 1.09002 * 109.47228 * 55.08403 * 13 12 11 39 39 H 1.08994 * 109.47141 * 175.08511 * 13 12 11 40 40 H 1.09003 * 109.47101 * 304.02366 * 14 13 12 41 41 H 1.09003 * 109.46951 * 64.01582 * 14 13 12 42 42 H 1.08997 * 109.47300 * 299.99675 * 15 14 13 43 43 H 1.09002 * 109.47129 * 60.00401 * 15 14 13 44 44 H 0.97001 * 119.99588 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 0.0006 6 1 3.9860 0.2984 0.2427 7 6 4.0540 1.7168 -1.3564 8 6 5.3898 1.0475 -1.7237 9 6 6.3512 0.9778 -0.5205 10 6 6.3484 2.2441 0.2976 11 6 5.3254 2.0997 1.4453 12 7 4.0132 2.2703 0.9950 13 6 3.0751 2.3457 2.1228 14 6 3.0601 1.0073 2.8641 15 6 2.0106 1.0521 3.9765 16 16 1.9924 -0.5315 4.8528 17 6 0.7326 -0.2088 6.0416 18 1 0.2378 0.7511 6.0571 19 6 0.3759 -1.1883 6.9582 20 7 -0.5656 -0.9474 7.8460 21 14 1.2322 -2.8483 6.9318 22 1 2.4238 -2.8046 7.8168 23 1 0.2961 -3.8957 7.4132 24 1 1.6572 -3.1640 5.5444 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.3061 1.4563 -2.1053 29 1 4.1886 2.7984 -1.3511 30 1 5.8635 1.6166 -2.5236 31 1 5.1916 0.0359 -2.0782 32 1 7.3617 0.7974 -0.8871 33 1 6.0546 0.1455 0.1177 34 1 6.0697 3.0865 -0.3354 35 1 7.3416 2.4134 0.7134 36 1 5.5394 2.8482 2.2082 37 1 5.4239 1.1070 1.8846 38 1 3.3899 3.1353 2.8051 39 1 2.0750 2.5655 1.7494 40 1 2.8148 0.2076 2.1651 41 1 4.0424 0.8215 3.2984 42 1 2.2559 1.8517 4.6754 43 1 1.0283 1.2378 3.5420 44 1 -0.8146 -1.6317 8.4867 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378568607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:49 Heat of formation + Delta-G solvation = -90.466324 kcal Electronic energy + Delta-G solvation = -23700.154054 eV Core-core repulsion = 20357.604469 eV Total energy + Delta-G solvation = -3342.549585 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.150 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.27773 -39.16034 -36.48030 -35.61871 -32.68441 -32.45544 -32.28206 -28.30797 -27.26233 -25.89718 -25.69855 -24.32061 -22.50856 -21.66708 -20.13409 -19.56488 -17.81778 -17.49576 -17.03488 -16.59404 -15.72428 -15.37470 -15.00340 -14.83617 -14.78770 -14.50886 -14.42621 -13.66179 -13.45393 -13.33343 -12.87466 -12.82469 -12.50048 -12.24808 -11.98421 -11.92114 -11.81988 -11.60216 -11.32498 -11.14612 -11.06294 -10.89094 -10.87930 -10.71654 -10.56184 -10.33617 -10.31141 -10.06558 -9.84978 -9.01950 -8.60635 -8.25036 -6.95987 -6.29423 -4.01811 2.07317 2.58225 2.99400 3.28290 3.43523 3.55302 3.72941 4.30155 4.48612 4.51329 4.70173 4.73133 4.77837 4.87896 4.89316 5.07404 5.09586 5.12915 5.15889 5.21225 5.25351 5.38576 5.46278 5.50421 5.53664 5.59818 5.62528 5.70901 5.79484 5.85724 5.88949 5.90394 5.99604 6.07058 6.19240 6.21016 6.35959 6.38617 6.58233 6.85107 7.21643 7.71945 7.94428 8.43675 9.16429 10.80132 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.018694 B = 0.004058 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.452567 B = 6897.480788 C = 7476.785333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.466 3.534 4 O -0.492 6.492 5 C 0.107 3.893 6 H 0.081 0.919 7 C -0.107 4.107 8 C -0.115 4.115 9 C -0.126 4.126 10 C -0.120 4.120 11 C 0.067 3.933 12 N -0.529 5.529 13 C 0.033 3.967 14 C -0.142 4.142 15 C -0.076 4.076 16 S -0.216 6.216 17 C -0.502 4.502 18 H 0.088 0.912 19 C 0.092 3.908 20 N -0.882 5.882 21 Si 0.861 3.139 22 H -0.269 1.269 23 H -0.276 1.276 24 H -0.238 1.238 25 H 0.103 0.897 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.031 0.969 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.711 3.844 -20.042 23.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.271 6.271 3 C 0.308 3.692 4 O -0.378 6.378 5 C -0.002 4.002 6 H 0.099 0.901 7 C -0.145 4.145 8 C -0.152 4.152 9 C -0.164 4.164 10 C -0.158 4.158 11 C -0.062 4.062 12 N -0.254 5.254 13 C -0.095 4.095 14 C -0.182 4.182 15 C -0.225 4.225 16 S 0.012 5.988 17 C -0.649 4.649 18 H 0.106 0.894 19 C -0.116 4.116 20 N -0.519 5.519 21 Si 0.686 3.314 22 H -0.194 1.194 23 H -0.201 1.201 24 H -0.162 1.162 25 H 0.122 0.878 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.049 0.951 38 H 0.101 0.899 39 H 0.117 0.883 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.984 3.539 -20.285 23.825 hybrid contribution -0.797 -0.416 1.008 1.351 sum 11.187 3.124 -19.277 22.506 Atomic orbital electron populations 1.23320 0.75728 1.04122 1.02607 1.86522 1.23914 1.33051 1.83587 1.23476 0.91729 0.81692 0.72318 1.90626 1.66974 1.36200 1.43994 1.20938 0.86940 0.96677 0.95603 0.90100 1.21363 0.96971 1.02892 0.93270 1.21910 0.94549 1.00808 0.97972 1.21477 0.99327 0.98453 0.97108 1.21521 0.98486 0.98537 0.97209 1.21087 0.87326 1.00732 0.97026 1.59142 1.03102 1.47947 1.15166 1.22806 0.98415 0.97222 0.91085 1.22066 0.99894 0.98273 0.97950 1.22926 1.00367 1.00452 0.98745 1.84136 1.53816 1.19101 1.41783 1.22125 1.21373 1.04653 1.16792 0.89442 1.24791 0.94240 0.98605 0.93947 1.69942 1.29084 1.34877 1.17954 0.86678 0.80030 0.83545 0.81137 1.19378 1.20083 1.16220 0.87816 0.91303 0.92089 0.91631 0.89281 0.91525 0.91919 0.91937 0.92095 0.90566 0.91237 0.90189 0.95060 0.89907 0.88332 0.91563 0.91145 0.91314 0.91678 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.49 16 2 O -0.35 -4.94 10.26 -39.26 -0.40 -5.34 16 3 C 0.47 6.56 4.31 36.00 0.16 6.72 16 4 O -0.49 -7.96 14.47 -18.75 -0.27 -8.23 16 5 C 0.11 1.26 1.51 -69.55 -0.11 1.15 16 6 H 0.08 0.95 6.46 -51.93 -0.34 0.61 16 7 C -0.11 -1.02 4.98 -27.38 -0.14 -1.16 16 8 C -0.11 -0.87 5.91 -25.67 -0.15 -1.02 16 9 C -0.13 -0.98 5.32 -27.24 -0.14 -1.13 16 10 C -0.12 -0.99 5.65 -27.11 -0.15 -1.14 16 11 C 0.07 0.70 4.49 -6.75 -0.03 0.67 16 12 N -0.53 -6.41 4.04 -233.39 -0.94 -7.36 16 13 C 0.03 0.47 4.71 -3.82 -0.02 0.45 16 14 C -0.14 -2.28 4.48 -26.73 -0.12 -2.40 16 15 C -0.08 -1.52 5.67 37.16 0.21 -1.31 16 16 S -0.22 -5.33 19.41 -107.50 -2.09 -7.41 16 17 C -0.50 -14.70 10.04 30.94 0.31 -14.39 16 18 H 0.09 2.74 8.03 -52.48 -0.42 2.32 16 19 C 0.09 2.72 5.50 -17.43 -0.10 2.62 16 20 N -0.88 -26.89 13.97 55.49 0.78 -26.11 16 21 Si 0.86 21.63 27.74 -169.99 -4.72 16.92 16 22 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 25 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.07 0.91 8.13 -51.93 -0.42 0.48 16 27 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 28 H 0.07 0.61 7.71 -51.93 -0.40 0.21 16 29 H 0.09 0.90 7.27 -51.93 -0.38 0.52 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 34 H 0.08 0.65 7.11 -51.93 -0.37 0.28 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.81 7.87 -51.93 -0.41 0.40 16 37 H 0.03 0.35 6.21 -51.93 -0.32 0.03 16 38 H 0.08 1.12 7.94 -51.93 -0.41 0.70 16 39 H 0.10 1.59 5.05 -51.93 -0.26 1.33 16 40 H 0.07 1.10 6.03 -51.93 -0.31 0.79 16 41 H 0.07 1.11 6.91 -51.93 -0.36 0.75 16 42 H 0.07 1.38 8.14 -51.92 -0.42 0.95 16 43 H 0.06 1.34 8.14 -51.91 -0.42 0.92 16 44 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 348.68 15.07 5.25 5.25 Total: -1.00 -32.21 348.68 -8.88 -41.09 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -7.28 Total: 0.64 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 0.79 Total: -9.45 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: -0.17 Total: -33.47 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.67 Total: -13.57 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.72 Total: 16.92 kcal Atomic # 16 Polarization: -5.33 SS G_CDS: -2.09 Total: -7.41 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.21 -8.88 -41.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378568607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.375 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds