Wall clock time and date at job start Tue Mar 31 2020 08:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00027 * 2 1 4 4 H 1.48494 * 109.47268 * 269.99904 * 3 2 1 5 5 H 1.48503 * 109.46977 * 30.00222 * 3 2 1 6 6 H 1.48502 * 109.46973 * 150.00063 * 3 2 1 7 7 C 1.37883 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99782 * 186.11633 * 7 2 1 9 9 C 1.50695 * 120.00017 * 6.11954 * 7 2 1 10 10 H 1.09000 * 109.47206 * 25.85099 * 9 7 2 11 11 C 1.53004 * 109.47034 * 145.84894 * 9 7 2 12 12 C 1.50698 * 109.47237 * 295.00170 * 11 9 7 13 13 O 1.21284 * 119.99976 * 359.97438 * 12 11 9 14 14 N 1.34771 * 119.99868 * 180.02562 * 12 11 9 15 15 C 1.46502 * 120.00127 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.47217 * 180.02562 * 15 14 12 17 17 C 1.54964 * 110.92564 * 71.54363 * 16 15 14 18 18 C 1.54263 * 104.16161 * 156.29664 * 17 16 15 19 19 C 1.53877 * 106.63740 * 336.43941 * 18 17 16 20 20 C 1.54261 * 106.60113 * 359.97438 * 19 18 17 21 21 C 1.50700 * 109.46933 * 265.84772 * 9 7 2 22 22 C 1.38235 * 120.00267 * 303.46166 * 21 9 7 23 23 C 1.38236 * 120.00149 * 179.81416 * 22 21 9 24 24 C 1.38228 * 119.99977 * 0.39012 * 23 22 21 25 25 C 1.38243 * 120.00150 * 359.86321 * 24 23 22 26 26 C 1.38230 * 119.99559 * 359.94995 * 25 24 23 27 27 H 0.97000 * 119.99786 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46960 * 174.99404 * 11 9 7 29 29 H 1.09010 * 109.46903 * 55.00131 * 11 9 7 30 30 H 0.96998 * 120.00196 * 359.97438 * 14 12 11 31 31 H 1.08999 * 109.46881 * 59.99602 * 15 14 12 32 32 H 1.09002 * 109.46809 * 300.00420 * 15 14 12 33 33 H 1.08998 * 110.67212 * 308.23307 * 16 15 14 34 34 H 1.08991 * 110.47736 * 37.63743 * 17 16 15 35 35 H 1.08999 * 110.52355 * 274.97539 * 17 16 15 36 36 H 1.08995 * 110.02942 * 217.13641 * 18 17 16 37 37 H 1.08994 * 110.03318 * 95.74845 * 18 17 16 38 38 H 1.09008 * 110.02725 * 119.26102 * 19 18 17 39 39 H 1.08999 * 110.03383 * 240.63916 * 19 18 17 40 40 H 1.09009 * 110.48945 * 142.28644 * 20 19 18 41 41 H 1.08998 * 110.48538 * 264.79484 * 20 19 18 42 42 H 1.08008 * 119.99712 * 359.97438 * 22 21 9 43 43 H 1.07996 * 120.00144 * 180.23061 * 23 22 21 44 44 H 1.07995 * 120.00481 * 179.83915 * 24 23 22 45 45 H 1.08001 * 120.00091 * 179.97438 * 25 24 23 46 46 H 1.08008 * 119.99967 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0799 -1.1968 0.1002 9 6 1.2575 -2.4955 -0.1380 10 1 0.3201 -2.3219 -0.6665 11 6 2.1103 -3.4917 -0.9262 12 6 2.2985 -2.9882 -2.3341 13 8 1.7993 -1.9364 -2.6737 14 7 3.0207 -3.7073 -3.2159 15 6 3.2033 -3.2182 -4.5847 16 6 4.0551 -4.2150 -5.3732 17 6 3.2559 -5.5074 -5.6767 18 6 3.9531 -6.0994 -6.9189 19 6 4.6628 -4.9306 -7.6247 20 6 4.3718 -3.6681 -6.7874 21 6 0.9664 -3.0557 1.2304 22 6 2.0018 -3.2905 2.1157 23 6 1.7345 -3.8008 3.3723 24 6 0.4326 -4.0839 3.7407 25 6 -0.6024 -3.8541 2.8535 26 6 -0.3353 -3.3402 1.5983 27 1 -0.4850 0.8401 0.0004 28 1 1.6093 -4.4595 -0.9503 29 1 3.0827 -3.5979 -0.4452 30 1 3.4197 -4.5487 -2.9444 31 1 3.7044 -2.2505 -4.5609 32 1 2.2307 -3.1119 -5.0653 33 1 4.9736 -4.4471 -4.8341 34 1 2.2161 -5.2691 -5.9002 35 1 3.3175 -6.2007 -4.8379 36 1 3.2142 -6.5445 -7.5851 37 1 4.6823 -6.8504 -6.6154 38 1 5.7366 -5.1141 -7.6629 39 1 4.2690 -4.8092 -8.6338 40 1 5.2474 -3.0194 -6.7582 41 1 3.5139 -3.1313 -7.1922 42 1 3.0194 -3.0728 1.8265 43 1 2.5430 -3.9808 4.0653 44 1 0.2239 -4.4850 4.7214 45 1 -1.6195 -4.0756 3.1411 46 1 -1.1439 -3.1609 0.9050 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354375708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:26:12 Heat of formation + Delta-G solvation = -40.860996 kcal Electronic energy + Delta-G solvation = -24145.777473 eV Core-core repulsion = 20805.768080 eV Total energy + Delta-G solvation = -3340.009394 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.25106 -38.41991 -37.82414 -34.28885 -33.66196 -31.43814 -30.07831 -29.96146 -28.85449 -28.52123 -25.73953 -24.16217 -22.54092 -21.58001 -20.62916 -20.22453 -19.91724 -19.04136 -16.60873 -16.33673 -16.15333 -15.73414 -15.19238 -14.82252 -14.52304 -14.35878 -14.08156 -13.84293 -13.54646 -13.37741 -12.89439 -12.59696 -12.37796 -12.22148 -11.92238 -11.60783 -11.59831 -11.46128 -11.25829 -11.16401 -10.86252 -10.79912 -10.72741 -10.61401 -10.60014 -10.52332 -10.22433 -10.01694 -9.40217 -9.01882 -8.79865 -8.45830 -8.28045 -8.01235 -7.56851 -5.89286 -3.88396 2.32155 2.38191 3.41485 3.46941 3.48720 3.64068 3.78027 4.44239 4.46147 4.55852 4.58640 4.78886 5.12504 5.26443 5.31951 5.36252 5.44333 5.48482 5.52033 5.65749 5.68945 5.75035 5.75835 5.76803 5.87463 5.89727 5.97234 6.00818 6.11611 6.14708 6.20029 6.26057 6.31594 6.33880 6.44621 6.57808 6.85268 6.95047 7.02795 7.08672 7.34199 7.48661 7.57208 7.90032 7.98859 8.09254 8.19685 8.43385 9.11254 9.18391 9.73408 11.21069 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.013656 B = 0.003809 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.875011 B = 7348.650140 C = 8820.929595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.079 3.921 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.491 4.491 8 H 0.050 0.950 9 C 0.080 3.920 10 H 0.072 0.928 11 C -0.122 4.122 12 C 0.511 3.489 13 O -0.497 6.497 14 N -0.750 5.750 15 C 0.130 3.870 16 C -0.104 4.104 17 C -0.120 4.120 18 C -0.125 4.125 19 C -0.124 4.124 20 C -0.118 4.118 21 C -0.020 4.020 22 C -0.116 4.116 23 C -0.132 4.132 24 C -0.156 4.156 25 C -0.128 4.128 26 C -0.119 4.119 27 H 0.258 0.742 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.391 0.609 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.936 -13.011 -8.156 16.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.124 4.124 3 Si 0.714 3.286 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.201 1.201 7 C -0.528 4.528 8 H 0.068 0.932 9 C 0.061 3.939 10 H 0.090 0.910 11 C -0.163 4.163 12 C 0.297 3.703 13 O -0.368 6.368 14 N -0.406 5.406 15 C 0.006 3.994 16 C -0.123 4.123 17 C -0.157 4.157 18 C -0.163 4.163 19 C -0.162 4.162 20 C -0.156 4.156 21 C -0.021 4.021 22 C -0.134 4.134 23 C -0.150 4.150 24 C -0.174 4.174 25 C -0.146 4.146 26 C -0.137 4.137 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.224 0.776 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.131 0.869 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.377 -12.060 -8.410 16.026 hybrid contribution 0.705 0.664 0.231 0.996 sum 7.082 -11.396 -8.178 15.713 Atomic orbital electron populations 1.69915 1.05932 1.26346 1.49696 1.24803 0.94643 0.98804 0.94188 0.86705 0.79838 0.84055 0.77979 1.20673 1.21527 1.20141 1.20678 0.92386 0.89628 1.50150 0.93198 1.17833 0.97577 0.91439 0.87085 0.91030 1.21791 1.02230 0.99882 0.92380 1.20893 0.77725 0.84411 0.87257 1.90759 1.46170 1.21433 1.78457 1.46196 1.56958 1.25845 1.11578 1.21175 0.99145 0.96647 0.82408 1.22394 0.98690 0.95227 0.95968 1.22454 0.99478 0.96383 0.97416 1.22134 0.99339 0.97742 0.97075 1.22119 1.00266 0.94836 0.98951 1.22341 1.01715 0.97274 0.94232 1.20748 0.91935 0.90290 0.99088 1.20949 0.99408 0.99573 0.93447 1.20969 0.96059 1.01300 0.96681 1.20787 0.93351 1.04336 0.98971 1.20982 0.97957 1.01007 0.94693 1.21091 0.97101 0.99355 0.96177 0.93182 0.91762 0.90637 0.77623 0.92050 0.92070 0.90174 0.91285 0.91610 0.92026 0.92036 0.92018 0.91972 0.91497 0.91188 0.86926 0.87703 0.87842 0.87667 0.86854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.25 12.87 55.43 0.71 -25.54 16 2 C 0.08 2.25 5.45 -17.82 -0.10 2.16 16 3 Si 0.89 22.55 29.54 -169.99 -5.02 17.53 16 4 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 7 C -0.49 -13.35 6.37 -34.44 -0.22 -13.57 16 8 H 0.05 1.35 7.82 -52.49 -0.41 0.94 16 9 C 0.08 1.92 1.67 -92.92 -0.16 1.77 16 10 H 0.07 1.99 6.98 -51.93 -0.36 1.63 16 11 C -0.12 -2.39 4.95 -27.88 -0.14 -2.52 16 12 C 0.51 10.29 7.58 -10.99 -0.08 10.21 16 13 O -0.50 -12.65 14.98 5.55 0.08 -12.56 16 14 N -0.75 -11.21 5.48 -60.29 -0.33 -11.54 16 15 C 0.13 1.79 5.12 -4.04 -0.02 1.77 16 16 C -0.10 -1.04 2.90 -88.58 -0.26 -1.30 16 17 C -0.12 -1.09 6.22 -25.03 -0.16 -1.25 16 18 C -0.13 -0.99 6.80 -25.61 -0.17 -1.17 16 19 C -0.12 -0.98 6.80 -25.61 -0.17 -1.15 16 20 C -0.12 -1.07 6.27 -25.07 -0.16 -1.23 16 21 C -0.02 -0.45 4.77 -104.62 -0.50 -0.95 16 22 C -0.12 -2.36 8.86 -39.58 -0.35 -2.71 16 23 C -0.13 -2.39 10.05 -39.59 -0.40 -2.79 16 24 C -0.16 -2.75 10.05 -39.58 -0.40 -3.15 16 25 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 26 C -0.12 -2.55 9.67 -39.58 -0.38 -2.93 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.08 1.36 7.78 -51.92 -0.40 0.95 16 30 H 0.39 4.60 8.47 -40.82 -0.35 4.26 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.91 8.00 -51.93 -0.42 0.49 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.69 7.95 -51.93 -0.41 0.28 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 41 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 42 H 0.11 2.22 7.76 -52.48 -0.41 1.81 16 43 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 44 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 45 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 46 H 0.11 2.45 7.95 -52.48 -0.42 2.03 16 LS Contribution 374.28 15.07 5.64 5.64 Total: -1.00 -32.28 374.28 -10.77 -43.05 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -7.80 Total: 5.03 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -4.06 Total: -21.61 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.38 Total: -37.08 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.08 Total: -12.56 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.28 -10.77 -43.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354375708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.191 kcal (2) G-P(sol) polarization free energy of solvation -32.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds