Wall clock time and date at job start Tue Mar 31 2020 08:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00027 * 2 1 4 4 H 1.48494 * 109.47268 * 269.99904 * 3 2 1 5 5 H 1.48503 * 109.46977 * 30.00222 * 3 2 1 6 6 H 1.48502 * 109.46973 * 150.00063 * 3 2 1 7 7 C 1.37883 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99782 * 186.11633 * 7 2 1 9 9 C 1.50695 * 120.00017 * 6.11954 * 7 2 1 10 10 H 1.09000 * 109.47206 * 25.85099 * 9 7 2 11 11 C 1.53004 * 109.47034 * 145.84894 * 9 7 2 12 12 C 1.50698 * 109.47237 * 295.00170 * 11 9 7 13 13 O 1.21284 * 119.99976 * 359.97438 * 12 11 9 14 14 N 1.34771 * 119.99868 * 180.02562 * 12 11 9 15 15 C 1.46502 * 120.00127 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.47217 * 180.02562 * 15 14 12 17 17 C 1.54964 * 110.92564 * 71.54363 * 16 15 14 18 18 C 1.54263 * 104.16161 * 156.29664 * 17 16 15 19 19 C 1.53877 * 106.63740 * 336.43941 * 18 17 16 20 20 C 1.54261 * 106.60113 * 359.97438 * 19 18 17 21 21 C 1.50700 * 109.46933 * 265.84772 * 9 7 2 22 22 C 1.38235 * 120.00267 * 303.46166 * 21 9 7 23 23 C 1.38236 * 120.00149 * 179.81416 * 22 21 9 24 24 C 1.38228 * 119.99977 * 0.39012 * 23 22 21 25 25 C 1.38243 * 120.00150 * 359.86321 * 24 23 22 26 26 C 1.38230 * 119.99559 * 359.94995 * 25 24 23 27 27 H 0.97000 * 119.99786 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46960 * 174.99404 * 11 9 7 29 29 H 1.09010 * 109.46903 * 55.00131 * 11 9 7 30 30 H 0.96998 * 120.00196 * 359.97438 * 14 12 11 31 31 H 1.08999 * 109.46881 * 59.99602 * 15 14 12 32 32 H 1.09002 * 109.46809 * 300.00420 * 15 14 12 33 33 H 1.08998 * 110.67212 * 308.23307 * 16 15 14 34 34 H 1.08991 * 110.47736 * 37.63743 * 17 16 15 35 35 H 1.08999 * 110.52355 * 274.97539 * 17 16 15 36 36 H 1.08995 * 110.02942 * 217.13641 * 18 17 16 37 37 H 1.08994 * 110.03318 * 95.74845 * 18 17 16 38 38 H 1.09008 * 110.02725 * 119.26102 * 19 18 17 39 39 H 1.08999 * 110.03383 * 240.63916 * 19 18 17 40 40 H 1.09009 * 110.48945 * 142.28644 * 20 19 18 41 41 H 1.08998 * 110.48538 * 264.79484 * 20 19 18 42 42 H 1.08008 * 119.99712 * 359.97438 * 22 21 9 43 43 H 1.07996 * 120.00144 * 180.23061 * 23 22 21 44 44 H 1.07995 * 120.00481 * 179.83915 * 24 23 22 45 45 H 1.08001 * 120.00091 * 179.97438 * 25 24 23 46 46 H 1.08008 * 119.99967 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0799 -1.1968 0.1002 9 6 1.2575 -2.4955 -0.1380 10 1 0.3201 -2.3219 -0.6665 11 6 2.1103 -3.4917 -0.9262 12 6 2.2985 -2.9882 -2.3341 13 8 1.7993 -1.9364 -2.6737 14 7 3.0207 -3.7073 -3.2159 15 6 3.2033 -3.2182 -4.5847 16 6 4.0551 -4.2150 -5.3732 17 6 3.2559 -5.5074 -5.6767 18 6 3.9531 -6.0994 -6.9189 19 6 4.6628 -4.9306 -7.6247 20 6 4.3718 -3.6681 -6.7874 21 6 0.9664 -3.0557 1.2304 22 6 2.0018 -3.2905 2.1157 23 6 1.7345 -3.8008 3.3723 24 6 0.4326 -4.0839 3.7407 25 6 -0.6024 -3.8541 2.8535 26 6 -0.3353 -3.3402 1.5983 27 1 -0.4850 0.8401 0.0004 28 1 1.6093 -4.4595 -0.9503 29 1 3.0827 -3.5979 -0.4452 30 1 3.4197 -4.5487 -2.9444 31 1 3.7044 -2.2505 -4.5609 32 1 2.2307 -3.1119 -5.0653 33 1 4.9736 -4.4471 -4.8341 34 1 2.2161 -5.2691 -5.9002 35 1 3.3175 -6.2007 -4.8379 36 1 3.2142 -6.5445 -7.5851 37 1 4.6823 -6.8504 -6.6154 38 1 5.7366 -5.1141 -7.6629 39 1 4.2690 -4.8092 -8.6338 40 1 5.2474 -3.0194 -6.7582 41 1 3.5139 -3.1313 -7.1922 42 1 3.0194 -3.0728 1.8265 43 1 2.5430 -3.9808 4.0653 44 1 0.2239 -4.4850 4.7214 45 1 -1.6195 -4.0756 3.1411 46 1 -1.1439 -3.1609 0.9050 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354375708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:26:11 Heat of formation + Delta-G solvation = -58.797990 kcal Electronic energy + Delta-G solvation = -24146.555280 eV Core-core repulsion = 20805.768080 eV Total energy + Delta-G solvation = -3340.787200 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.178 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.71948 -39.78353 -38.97974 -35.90595 -35.23516 -33.40769 -31.49412 -31.23789 -29.97228 -29.51758 -27.53732 -25.51450 -24.11812 -23.11104 -21.78483 -21.27246 -20.98758 -20.51605 -18.50166 -17.91522 -17.28981 -17.05711 -16.57174 -16.26616 -16.09711 -15.69498 -15.44365 -15.38103 -14.73145 -14.55195 -14.19260 -14.08577 -13.96132 -13.61930 -13.55512 -13.21517 -13.14798 -12.85105 -12.51792 -12.43645 -12.20439 -12.01771 -11.93763 -11.81642 -11.68407 -11.66007 -11.52602 -11.29968 -11.22034 -10.94584 -10.62081 -10.32607 -9.87772 -9.52875 -9.17456 -8.03745 -6.05889 0.79233 0.85687 1.34675 1.39883 1.44184 2.01797 2.45314 2.46518 3.19963 3.37227 3.64833 3.68698 3.85344 4.22888 4.26963 4.35125 4.37250 4.42508 4.44465 4.52432 4.56738 4.62457 4.66334 4.72057 4.76778 4.81867 4.85043 4.93889 4.96432 5.01606 5.05998 5.14676 5.24479 5.27935 5.34974 5.39315 5.47818 5.52938 5.54488 5.64883 5.70349 5.79897 5.85108 5.97094 6.18926 6.43324 6.48109 6.84046 7.02243 7.56836 7.65068 9.06202 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.013656 B = 0.003809 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.875011 B = 7348.650140 C = 8820.929595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.023 3.977 3 Si 0.934 3.066 4 H -0.290 1.290 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.484 4.484 8 H 0.047 0.953 9 C 0.082 3.918 10 H 0.022 0.978 11 C -0.116 4.116 12 C 0.508 3.492 13 O -0.561 6.561 14 N -0.726 5.726 15 C 0.131 3.869 16 C -0.095 4.095 17 C -0.120 4.120 18 C -0.122 4.122 19 C -0.121 4.121 20 C -0.120 4.120 21 C -0.045 4.045 22 C -0.128 4.128 23 C -0.126 4.126 24 C -0.148 4.148 25 C -0.128 4.128 26 C -0.144 4.144 27 H 0.253 0.747 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.411 0.589 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.116 0.884 43 H 0.141 0.859 44 H 0.144 0.856 45 H 0.131 0.869 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.032 -15.470 -6.855 19.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.217 1.217 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.522 4.522 8 H 0.065 0.935 9 C 0.062 3.938 10 H 0.040 0.960 11 C -0.156 4.156 12 C 0.295 3.705 13 O -0.437 6.437 14 N -0.381 5.381 15 C 0.007 3.993 16 C -0.113 4.113 17 C -0.158 4.158 18 C -0.160 4.160 19 C -0.159 4.159 20 C -0.158 4.158 21 C -0.045 4.045 22 C -0.146 4.146 23 C -0.144 4.144 24 C -0.166 4.166 25 C -0.146 4.146 26 C -0.163 4.163 27 H 0.062 0.938 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.247 0.753 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.134 0.866 43 H 0.159 0.841 44 H 0.161 0.839 45 H 0.149 0.851 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.526 -14.581 -7.111 18.327 hybrid contribution 0.055 1.309 -0.161 1.320 sum 8.582 -13.272 -7.272 17.398 Atomic orbital electron populations 1.70058 1.07149 1.26313 1.52288 1.25485 0.95316 1.01735 0.95032 0.85933 0.79428 0.81167 0.77359 1.21720 1.21226 1.18601 1.20988 0.92260 0.91051 1.47863 0.93481 1.17622 0.95676 0.91829 0.88624 0.95953 1.21674 1.02666 0.99699 0.91553 1.21083 0.77456 0.83829 0.88095 1.90741 1.49056 1.24340 1.79589 1.45930 1.55004 1.25783 1.11397 1.21243 0.98961 0.97239 0.81860 1.22336 0.98429 0.94595 0.95961 1.22458 0.98709 0.96011 0.98606 1.22127 0.99599 0.97900 0.96370 1.22114 1.01019 0.93852 0.98883 1.22368 1.01557 0.98113 0.93776 1.20558 0.93106 0.92452 0.98396 1.21042 0.98895 1.00295 0.94341 1.21371 0.97561 0.99449 0.96011 1.21261 0.92612 1.02567 1.00133 1.21284 0.99973 0.99863 0.93517 1.21103 0.96375 1.01226 0.97568 0.93829 0.89062 0.88508 0.75255 0.93888 0.93693 0.88823 0.92632 0.90654 0.91587 0.90823 0.90919 0.91444 0.91075 0.92134 0.86610 0.84105 0.83859 0.85076 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.54 12.87 21.45 0.28 -57.26 16 2 C 0.02 1.35 5.45 84.66 0.46 1.81 16 3 Si 0.93 47.56 29.54 68.60 2.03 49.58 16 4 H -0.29 -15.10 7.11 99.48 0.71 -14.39 16 5 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 6 H -0.26 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.48 -27.06 6.37 25.60 0.16 -26.89 16 8 H 0.05 2.59 7.82 -2.91 -0.02 2.56 16 9 C 0.08 4.09 1.67 -12.29 -0.02 4.07 16 10 H 0.02 1.32 6.98 -2.39 -0.02 1.31 16 11 C -0.12 -4.52 4.95 29.85 0.15 -4.38 16 12 C 0.51 20.96 7.58 87.66 0.66 21.62 16 13 O -0.56 -30.11 14.98 -3.04 -0.05 -30.16 16 14 N -0.73 -21.45 5.48 -463.06 -2.54 -23.99 16 15 C 0.13 3.65 5.12 86.38 0.44 4.09 16 16 C -0.09 -1.77 2.90 -9.47 -0.03 -1.80 16 17 C -0.12 -2.00 6.22 31.69 0.20 -1.80 16 18 C -0.12 -1.65 6.80 31.32 0.21 -1.43 16 19 C -0.12 -1.64 6.80 31.32 0.21 -1.43 16 20 C -0.12 -2.05 6.27 31.67 0.20 -1.86 16 21 C -0.04 -2.01 4.77 -19.87 -0.09 -2.11 16 22 C -0.13 -5.01 8.86 22.27 0.20 -4.81 16 23 C -0.13 -4.11 10.05 22.27 0.22 -3.89 16 24 C -0.15 -4.62 10.05 22.27 0.22 -4.40 16 25 C -0.13 -4.55 10.05 22.27 0.22 -4.33 16 26 C -0.14 -6.28 9.67 22.27 0.22 -6.07 16 27 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 28 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 29 H 0.10 3.35 7.78 -2.38 -0.02 3.33 16 30 H 0.41 8.90 8.47 -92.71 -0.79 8.11 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.04 1.41 8.00 -2.39 -0.02 1.39 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.05 1.08 7.95 -2.39 -0.02 1.06 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.06 1.14 8.05 -2.39 -0.02 1.12 16 42 H 0.12 4.36 7.76 -2.91 -0.02 4.34 16 43 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 44 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 45 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 46 H 0.09 4.28 7.95 -2.91 -0.02 4.26 16 Total: -1.00 -74.52 374.28 3.52 -71.00 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.16 Total: 24.43 kcal Atomic # 6 Polarization: -37.23 SS G_CDS: 3.64 Total: -33.59 kcal Atomic # 7 Polarization: -78.99 SS G_CDS: -2.26 Total: -81.25 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.05 Total: -30.16 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.58 kcal Total: -74.52 3.52 -71.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354375708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.200 kcal (2) G-P(sol) polarization free energy of solvation -74.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds