Wall clock time and date at job start Tue Mar 31 2020 08:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 110.88817 * 2 1 4 4 C 1.55161 * 111.00738 * 123.88552 * 2 1 3 5 5 C 1.54329 * 102.94151 * 82.57064 * 4 2 1 6 6 H 1.09003 * 109.88005 * 262.77498 * 5 4 2 7 7 C 1.50696 * 109.88173 * 141.61724 * 5 4 2 8 8 C 1.38238 * 119.99430 * 280.45875 * 7 5 4 9 9 C 1.38233 * 119.99909 * 179.74545 * 8 7 5 10 10 C 1.38237 * 119.99953 * 0.53210 * 9 8 7 11 11 C 1.38233 * 119.99684 * 359.74268 * 10 9 8 12 12 C 1.38228 * 120.00532 * 100.73409 * 7 5 4 13 13 N 1.47019 * 107.27094 * 22.19037 * 5 4 2 14 14 C 1.34777 * 125.64379 * 181.01952 * 13 5 4 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 5 16 16 C 1.50700 * 119.99675 * 179.72980 * 14 13 5 17 17 C 1.53004 * 109.47208 * 180.27843 * 16 14 13 18 18 C 1.50700 * 109.47208 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99770 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99720 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00078 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99915 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46986 * 89.99876 * 22 20 18 24 24 H 1.48492 * 109.47096 * 210.00138 * 22 20 18 25 25 H 1.48506 * 109.46749 * 330.00135 * 22 20 18 26 26 C 1.47423 * 108.70731 * 1.29062 * 13 5 4 27 27 H 1.09008 * 109.46814 * 296.11334 * 1 2 3 28 28 H 1.08994 * 109.47747 * 56.11238 * 1 2 3 29 29 H 1.09001 * 109.47500 * 176.11790 * 1 2 3 30 30 H 1.08998 * 109.47049 * 183.87941 * 3 2 1 31 31 H 1.08997 * 109.47383 * 303.88654 * 3 2 1 32 32 H 1.09000 * 109.46767 * 63.88733 * 3 2 1 33 33 H 1.09001 * 110.72047 * 324.20611 * 4 2 1 34 34 H 1.09000 * 110.87256 * 201.00039 * 4 2 1 35 35 H 1.08002 * 120.00031 * 0.02562 * 8 7 5 36 36 H 1.08003 * 120.00511 * 180.29849 * 9 8 7 37 37 H 1.08003 * 120.00172 * 179.77150 * 10 9 8 38 38 H 1.08006 * 119.99953 * 180.02562 * 11 10 9 39 39 H 1.07993 * 120.00135 * 0.02562 * 12 7 5 40 40 H 1.09009 * 109.47352 * 300.27556 * 16 14 13 41 41 H 1.08998 * 109.47585 * 60.27844 * 16 14 13 42 42 H 1.09000 * 109.46887 * 300.00372 * 17 16 14 43 43 H 1.08998 * 109.46846 * 59.99549 * 17 16 14 44 44 H 0.97008 * 119.99515 * 180.02562 * 21 20 18 45 45 H 1.09007 * 110.36652 * 94.47561 * 26 13 5 46 46 H 1.08993 * 110.36828 * 216.80441 * 26 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0754 1.4294 0.0000 4 6 2.0862 -0.8076 1.2025 5 6 2.0285 -2.2645 0.6966 6 1 1.1218 -2.7477 1.0608 7 6 3.2421 -3.0206 1.1726 8 6 4.4497 -2.8730 0.5162 9 6 5.5641 -3.5625 0.9559 10 6 5.4685 -4.4081 2.0452 11 6 4.2596 -4.5600 2.6981 12 6 3.1464 -3.8661 2.2619 13 7 2.0137 -2.2161 -0.7727 14 6 1.9469 -3.2834 -1.5930 15 8 1.8921 -4.4026 -1.1289 16 6 1.9337 -3.0858 -3.0869 17 6 1.8470 -4.4468 -3.7807 18 6 1.8344 -4.2492 -5.2746 19 1 1.8829 -3.2525 -5.6879 20 6 1.7609 -5.3407 -6.1137 21 7 1.7013 -6.5543 -5.6104 22 14 1.7445 -5.0958 -7.9656 23 1 3.1380 -5.1077 -8.4787 24 1 0.9728 -6.1927 -8.6031 25 1 1.1098 -3.7923 -8.2868 26 6 2.0907 -0.8074 -1.2002 27 1 -0.3633 0.4524 0.9228 28 1 -0.3634 0.5729 -0.8530 29 1 -0.3634 -1.0253 -0.0696 30 1 3.1629 1.4033 -0.0695 31 1 1.6697 1.9732 -0.8531 32 1 1.7824 1.9301 0.9228 33 1 1.4524 -0.6786 2.0799 34 1 3.1130 -0.5167 1.4240 35 1 4.5234 -2.2154 -0.3374 36 1 6.5088 -3.4435 0.4460 37 1 6.3384 -4.9496 2.3865 38 1 4.1849 -5.2204 3.5495 39 1 2.2019 -3.9852 2.7717 40 1 1.0712 -2.4803 -3.3657 41 1 2.8482 -2.5788 -3.3945 42 1 2.7094 -5.0523 -3.5018 43 1 0.9324 -4.9537 -3.4730 44 1 1.6500 -7.3222 -6.2008 45 1 3.1252 -0.5271 -1.3987 46 1 1.4763 -0.6456 -2.0858 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425112424.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:31:34 Heat of formation + Delta-G solvation = -26.985354 kcal Electronic energy + Delta-G solvation = -24972.904081 eV Core-core repulsion = 21633.496380 eV Total energy + Delta-G solvation = -3339.407701 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.59083 -38.54170 -37.69909 -33.71240 -33.40777 -32.10379 -30.80341 -30.60053 -28.63600 -27.50712 -26.35040 -25.64846 -23.49493 -22.48439 -21.84759 -20.42702 -19.30091 -18.56776 -16.97515 -16.78119 -16.02534 -15.61123 -15.11774 -14.85799 -14.54041 -14.43090 -14.25418 -13.99652 -13.86523 -13.30430 -13.17036 -12.97952 -12.75564 -12.37520 -12.28099 -12.16035 -12.09024 -11.93849 -11.62356 -11.34513 -11.08633 -11.03709 -10.91640 -10.83241 -10.77262 -10.64889 -10.56316 -9.92241 -9.60834 -9.15142 -9.00750 -8.77949 -8.59978 -8.33175 -8.27274 -5.93721 -3.98101 1.46145 1.54256 3.28086 3.32199 3.34536 3.40689 3.43371 3.91567 4.22042 4.46377 4.50378 4.59814 4.83567 4.98292 5.05354 5.12685 5.14884 5.20204 5.29393 5.41120 5.42122 5.48204 5.53005 5.53535 5.64778 5.68089 5.69839 5.74292 5.79498 5.91565 5.93851 6.01642 6.09383 6.14741 6.21037 6.26036 6.27144 6.54071 6.57077 6.62352 6.77896 6.94879 7.12225 7.76891 7.89450 7.92908 8.10098 8.41261 8.82711 9.10510 9.65240 11.17225 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.012941 B = 0.004301 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.171371 B = 6508.912122 C = 7980.254491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.079 4.079 3 C -0.135 4.135 4 C -0.112 4.112 5 C 0.177 3.823 6 H 0.078 0.922 7 C -0.078 4.078 8 C -0.099 4.099 9 C -0.120 4.120 10 C -0.125 4.125 11 C -0.121 4.121 12 C -0.108 4.108 13 N -0.623 5.623 14 C 0.525 3.475 15 O -0.523 6.523 16 C -0.123 4.123 17 C 0.038 3.962 18 C -0.526 4.526 19 H 0.055 0.945 20 C 0.058 3.942 21 N -0.889 5.889 22 Si 0.892 3.108 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.110 3.890 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.023 0.977 43 H 0.023 0.977 44 H 0.260 0.740 45 H 0.066 0.934 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.986 15.650 17.199 23.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.080 4.080 3 C -0.192 4.192 4 C -0.150 4.150 5 C 0.073 3.927 6 H 0.096 0.904 7 C -0.079 4.079 8 C -0.117 4.117 9 C -0.138 4.138 10 C -0.143 4.143 11 C -0.139 4.139 12 C -0.126 4.126 13 N -0.360 5.360 14 C 0.316 3.684 15 O -0.397 6.397 16 C -0.163 4.163 17 C 0.000 4.000 18 C -0.564 4.564 19 H 0.073 0.927 20 C -0.143 4.143 21 N -0.528 5.528 22 Si 0.720 3.280 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.013 4.013 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.070 0.930 45 H 0.084 0.916 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.916 14.742 17.312 22.925 hybrid contribution 0.059 -0.049 -1.093 1.096 sum 2.976 14.693 16.219 22.086 Atomic orbital electron populations 1.21753 0.93298 1.02493 1.01826 1.21805 0.96228 0.95083 0.94840 1.21717 1.00950 0.94420 1.02132 1.22815 1.02117 0.92406 0.97683 1.20348 0.95394 0.95161 0.81802 0.90385 1.20045 0.94864 0.97463 0.95565 1.20890 0.92287 0.99626 0.98919 1.21106 0.98523 0.97273 0.96923 1.21088 0.97712 0.98954 0.96515 1.21051 0.93056 0.99636 1.00193 1.20916 0.98426 0.96410 0.96885 1.48796 1.75676 1.06441 1.05059 1.21299 0.74576 0.82831 0.89671 1.90690 1.48040 1.23270 1.77665 1.21848 1.02176 1.04240 0.88066 1.18896 0.98520 0.88915 0.93629 1.21208 1.51144 0.92716 0.91352 0.92665 1.25018 0.95331 0.95238 0.98734 1.70006 1.50051 0.97863 1.34886 0.86605 0.77998 0.77751 0.85681 1.20682 1.21224 1.19883 1.22427 1.00700 0.80835 0.97364 0.92447 0.92175 0.92125 0.92282 0.92117 0.92251 0.90126 0.90294 0.86546 0.86334 0.86440 0.86344 0.86407 0.90445 0.90528 0.95888 0.95890 0.92980 0.91595 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.58 37.15 0.32 -0.89 16 2 C -0.08 -0.70 0.96 -152.24 -0.15 -0.85 16 3 C -0.13 -0.94 8.68 37.16 0.32 -0.61 16 4 C -0.11 -1.07 5.43 -24.89 -0.14 -1.20 16 5 C 0.18 2.35 2.73 -68.11 -0.19 2.17 16 6 H 0.08 1.11 8.03 -51.93 -0.42 0.69 16 7 C -0.08 -1.13 4.08 -104.63 -0.43 -1.56 16 8 C -0.10 -1.44 9.14 -39.58 -0.36 -1.81 16 9 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 10 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 11 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 12 C -0.11 -1.47 9.68 -39.59 -0.38 -1.85 16 13 N -0.62 -9.43 2.30 -164.18 -0.38 -9.81 16 14 C 0.53 10.63 7.47 -10.98 -0.08 10.55 16 15 O -0.52 -12.87 15.82 5.55 0.09 -12.78 16 16 C -0.12 -2.61 4.64 -27.88 -0.13 -2.74 16 17 C 0.04 1.05 4.26 -27.88 -0.12 0.93 16 18 C -0.53 -15.14 9.11 -34.44 -0.31 -15.45 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -27.81 13.29 55.43 0.74 -27.07 16 22 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.11 1.26 5.64 -2.41 -0.01 1.24 16 27 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.65 7.91 -51.93 -0.41 0.24 16 30 H 0.06 0.40 8.07 -51.93 -0.42 -0.02 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.65 8.05 -51.93 -0.42 0.23 16 34 H 0.08 0.73 7.71 -51.93 -0.40 0.33 16 35 H 0.12 1.66 7.68 -52.49 -0.40 1.25 16 36 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 37 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 38 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 39 H 0.12 1.40 8.05 -52.49 -0.42 0.97 16 40 H 0.08 1.50 7.85 -51.92 -0.41 1.10 16 41 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 42 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 44 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 45 H 0.07 0.70 7.99 -51.92 -0.41 0.28 16 46 H 0.08 0.92 7.39 -51.93 -0.38 0.53 16 LS Contribution 374.12 15.07 5.64 5.64 Total: -1.00 -34.71 374.12 -9.74 -44.45 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -7.86 Total: -0.89 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -2.95 Total: -16.39 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.36 Total: -36.88 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.09 Total: -12.78 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.71 -9.74 -44.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425112424.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.464 kcal (2) G-P(sol) polarization free energy of solvation -34.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds