Wall clock time and date at job start Tue Mar 31 2020 08:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 110.88817 * 2 1 4 4 C 1.55161 * 111.00738 * 123.88552 * 2 1 3 5 5 C 1.54329 * 102.94151 * 82.57064 * 4 2 1 6 6 H 1.09003 * 109.88005 * 262.77498 * 5 4 2 7 7 C 1.50696 * 109.88173 * 141.61724 * 5 4 2 8 8 C 1.38238 * 119.99430 * 280.45875 * 7 5 4 9 9 C 1.38233 * 119.99909 * 179.74545 * 8 7 5 10 10 C 1.38237 * 119.99953 * 0.53210 * 9 8 7 11 11 C 1.38233 * 119.99684 * 359.74268 * 10 9 8 12 12 C 1.38228 * 120.00532 * 100.73409 * 7 5 4 13 13 N 1.47019 * 107.27094 * 22.19037 * 5 4 2 14 14 C 1.34777 * 125.64379 * 181.01952 * 13 5 4 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 5 16 16 C 1.50700 * 119.99675 * 179.72980 * 14 13 5 17 17 C 1.53004 * 109.47208 * 180.27843 * 16 14 13 18 18 C 1.50700 * 109.47208 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99770 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99720 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00078 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99915 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46986 * 89.99876 * 22 20 18 24 24 H 1.48492 * 109.47096 * 210.00138 * 22 20 18 25 25 H 1.48506 * 109.46749 * 330.00135 * 22 20 18 26 26 C 1.47423 * 108.70731 * 1.29062 * 13 5 4 27 27 H 1.09008 * 109.46814 * 296.11334 * 1 2 3 28 28 H 1.08994 * 109.47747 * 56.11238 * 1 2 3 29 29 H 1.09001 * 109.47500 * 176.11790 * 1 2 3 30 30 H 1.08998 * 109.47049 * 183.87941 * 3 2 1 31 31 H 1.08997 * 109.47383 * 303.88654 * 3 2 1 32 32 H 1.09000 * 109.46767 * 63.88733 * 3 2 1 33 33 H 1.09001 * 110.72047 * 324.20611 * 4 2 1 34 34 H 1.09000 * 110.87256 * 201.00039 * 4 2 1 35 35 H 1.08002 * 120.00031 * 0.02562 * 8 7 5 36 36 H 1.08003 * 120.00511 * 180.29849 * 9 8 7 37 37 H 1.08003 * 120.00172 * 179.77150 * 10 9 8 38 38 H 1.08006 * 119.99953 * 180.02562 * 11 10 9 39 39 H 1.07993 * 120.00135 * 0.02562 * 12 7 5 40 40 H 1.09009 * 109.47352 * 300.27556 * 16 14 13 41 41 H 1.08998 * 109.47585 * 60.27844 * 16 14 13 42 42 H 1.09000 * 109.46887 * 300.00372 * 17 16 14 43 43 H 1.08998 * 109.46846 * 59.99549 * 17 16 14 44 44 H 0.97008 * 119.99515 * 180.02562 * 21 20 18 45 45 H 1.09007 * 110.36652 * 94.47561 * 26 13 5 46 46 H 1.08993 * 110.36828 * 216.80441 * 26 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0754 1.4294 0.0000 4 6 2.0862 -0.8076 1.2025 5 6 2.0285 -2.2645 0.6966 6 1 1.1218 -2.7477 1.0608 7 6 3.2421 -3.0206 1.1726 8 6 4.4497 -2.8730 0.5162 9 6 5.5641 -3.5625 0.9559 10 6 5.4685 -4.4081 2.0452 11 6 4.2596 -4.5600 2.6981 12 6 3.1464 -3.8661 2.2619 13 7 2.0137 -2.2161 -0.7727 14 6 1.9469 -3.2834 -1.5930 15 8 1.8921 -4.4026 -1.1289 16 6 1.9337 -3.0858 -3.0869 17 6 1.8470 -4.4468 -3.7807 18 6 1.8344 -4.2492 -5.2746 19 1 1.8829 -3.2525 -5.6879 20 6 1.7609 -5.3407 -6.1137 21 7 1.7013 -6.5543 -5.6104 22 14 1.7445 -5.0958 -7.9656 23 1 3.1380 -5.1077 -8.4787 24 1 0.9728 -6.1927 -8.6031 25 1 1.1098 -3.7923 -8.2868 26 6 2.0907 -0.8074 -1.2002 27 1 -0.3633 0.4524 0.9228 28 1 -0.3634 0.5729 -0.8530 29 1 -0.3634 -1.0253 -0.0696 30 1 3.1629 1.4033 -0.0695 31 1 1.6697 1.9732 -0.8531 32 1 1.7824 1.9301 0.9228 33 1 1.4524 -0.6786 2.0799 34 1 3.1130 -0.5167 1.4240 35 1 4.5234 -2.2154 -0.3374 36 1 6.5088 -3.4435 0.4460 37 1 6.3384 -4.9496 2.3865 38 1 4.1849 -5.2204 3.5495 39 1 2.2019 -3.9852 2.7717 40 1 1.0712 -2.4803 -3.3657 41 1 2.8482 -2.5788 -3.3945 42 1 2.7094 -5.0523 -3.5018 43 1 0.9324 -4.9537 -3.4730 44 1 1.6500 -7.3222 -6.2008 45 1 3.1252 -0.5271 -1.3987 46 1 1.4763 -0.6456 -2.0858 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425112424.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:31:33 Heat of formation + Delta-G solvation = -45.943632 kcal Electronic energy + Delta-G solvation = -24973.726174 eV Core-core repulsion = 21633.496380 eV Total energy + Delta-G solvation = -3340.229793 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.73579 -39.74377 -38.95160 -35.60791 -34.68423 -33.53268 -32.46168 -31.76072 -29.62679 -28.16052 -27.80219 -27.12646 -24.74090 -23.67436 -23.35291 -21.79630 -20.18515 -19.89845 -18.79957 -17.93127 -17.57928 -16.93220 -16.50797 -16.31319 -16.17624 -15.53815 -15.23942 -15.12464 -14.86236 -14.51409 -14.28709 -14.18275 -14.05098 -13.85288 -13.51372 -13.36909 -13.23787 -12.99528 -12.82911 -12.75588 -12.48241 -12.39795 -12.24652 -11.96796 -11.95449 -11.78081 -11.61231 -11.56880 -11.41004 -11.31954 -10.71162 -10.58489 -9.83191 -9.77110 -9.48346 -8.19201 -6.33904 0.42140 0.49318 1.40759 1.43998 1.54941 1.71049 2.02898 2.42282 2.87114 3.13651 3.39398 3.56629 3.73601 3.94351 3.97050 4.03086 4.13958 4.23015 4.25969 4.38337 4.42885 4.45506 4.46808 4.61459 4.64034 4.71336 4.79570 4.88946 4.90737 4.98316 5.02900 5.08038 5.09265 5.13142 5.17593 5.25588 5.38407 5.41731 5.47497 5.54158 5.54761 5.59132 5.59295 5.71546 5.82483 6.11094 6.15361 6.53937 6.84227 7.28431 7.36701 8.93634 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.012941 B = 0.004301 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.171371 B = 6508.912122 C = 7980.254491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.068 4.068 3 C -0.129 4.129 4 C -0.100 4.100 5 C 0.172 3.828 6 H 0.064 0.936 7 C -0.093 4.093 8 C -0.120 4.120 9 C -0.133 4.133 10 C -0.132 4.132 11 C -0.126 4.126 12 C -0.126 4.126 13 N -0.611 5.611 14 C 0.525 3.475 15 O -0.581 6.581 16 C -0.111 4.111 17 C 0.047 3.953 18 C -0.543 4.543 19 H 0.075 0.925 20 C -0.006 4.006 21 N -0.938 5.938 22 Si 0.975 3.025 23 H -0.271 1.271 24 H -0.285 1.285 25 H -0.254 1.254 26 C 0.097 3.903 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.034 0.966 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.114 0.886 36 H 0.134 0.866 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.129 0.871 40 H 0.099 0.901 41 H 0.097 0.903 42 H -0.021 1.021 43 H -0.020 1.020 44 H 0.263 0.737 45 H 0.080 0.920 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.405 18.661 17.121 25.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.068 4.068 3 C -0.187 4.187 4 C -0.138 4.138 5 C 0.068 3.932 6 H 0.082 0.918 7 C -0.094 4.094 8 C -0.138 4.138 9 C -0.151 4.151 10 C -0.150 4.150 11 C -0.144 4.144 12 C -0.145 4.145 13 N -0.344 5.344 14 C 0.315 3.685 15 O -0.460 6.460 16 C -0.150 4.150 17 C 0.009 3.991 18 C -0.580 4.580 19 H 0.093 0.907 20 C -0.203 4.203 21 N -0.578 5.578 22 Si 0.798 3.202 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.178 1.178 26 C -0.024 4.024 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.118 0.882 34 H 0.105 0.895 35 H 0.132 0.868 36 H 0.152 0.848 37 H 0.161 0.839 38 H 0.161 0.839 39 H 0.147 0.853 40 H 0.117 0.883 41 H 0.115 0.885 42 H -0.003 1.003 43 H -0.002 1.002 44 H 0.072 0.928 45 H 0.098 0.902 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.341 17.842 17.259 25.048 hybrid contribution -0.066 -0.999 -0.984 1.404 sum 3.275 16.843 16.275 23.650 Atomic orbital electron populations 1.21761 0.93168 1.01177 1.03199 1.21784 0.96208 0.95963 0.92875 1.21693 1.01138 0.92576 1.03287 1.22810 1.03144 0.89386 0.98464 1.20560 0.94542 0.97748 0.80303 0.91782 1.20222 0.95104 0.98050 0.96063 1.21010 0.92956 1.00540 0.99279 1.21410 0.98962 0.97302 0.97422 1.21450 0.98705 0.98702 0.96115 1.21422 0.92763 0.99459 1.00784 1.21209 0.99459 0.96606 0.97183 1.48617 1.73051 1.06912 1.05867 1.20994 0.74591 0.83138 0.89761 1.90661 1.51198 1.25727 1.78401 1.21581 1.04074 1.00657 0.88732 1.18648 0.94413 0.91520 0.94501 1.21677 1.50765 0.93749 0.91858 0.90650 1.26148 0.94507 0.94678 1.04993 1.70193 1.51223 0.99142 1.37240 0.85308 0.78469 0.78400 0.77996 1.19635 1.21102 1.17781 1.22821 1.01998 0.78728 0.98888 0.90600 0.91435 0.94672 0.91893 0.91362 0.90792 0.88150 0.89547 0.86821 0.84812 0.83936 0.83893 0.85315 0.88310 0.88493 1.00292 1.00154 0.92849 0.90158 0.89769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.58 71.98 0.62 -1.49 16 2 C -0.07 -1.03 0.96 -50.71 -0.05 -1.08 16 3 C -0.13 -1.33 8.68 71.98 0.62 -0.70 16 4 C -0.10 -1.70 5.43 31.79 0.17 -1.53 16 5 C 0.17 4.57 2.73 44.60 0.12 4.69 16 6 H 0.06 1.87 8.03 -2.39 -0.02 1.86 16 7 C -0.09 -2.73 4.08 -19.87 -0.08 -2.81 16 8 C -0.12 -3.52 9.14 22.27 0.20 -3.32 16 9 C -0.13 -3.58 10.05 22.27 0.22 -3.35 16 10 C -0.13 -3.24 10.05 22.27 0.22 -3.02 16 11 C -0.13 -3.13 10.05 22.27 0.22 -2.91 16 12 C -0.13 -3.46 9.68 22.27 0.22 -3.24 16 13 N -0.61 -18.56 2.30 -791.73 -1.82 -20.38 16 14 C 0.52 22.06 7.47 87.66 0.65 22.72 16 15 O -0.58 -30.50 15.82 -3.04 -0.05 -30.55 16 16 C -0.11 -4.77 4.64 29.85 0.14 -4.63 16 17 C 0.05 2.72 4.26 29.85 0.13 2.85 16 18 C -0.54 -31.67 9.11 25.60 0.23 -31.44 16 19 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 20 C -0.01 -0.35 5.46 84.65 0.46 0.12 16 21 N -0.94 -60.75 13.29 21.45 0.28 -60.46 16 22 Si 0.97 44.91 29.54 68.60 2.03 46.94 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 24 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 25 H -0.25 -10.82 7.11 99.48 0.71 -10.11 16 26 C 0.10 2.06 5.64 86.94 0.49 2.55 16 27 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.03 0.72 7.91 -2.39 -0.02 0.71 16 30 H 0.06 0.63 8.07 -2.39 -0.02 0.61 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.10 1.35 8.05 -2.39 -0.02 1.33 16 34 H 0.09 1.39 7.71 -2.39 -0.02 1.37 16 35 H 0.11 3.26 7.68 -2.91 -0.02 3.24 16 36 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 37 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 38 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 39 H 0.13 3.08 8.05 -2.91 -0.02 3.06 16 40 H 0.10 3.79 7.85 -2.38 -0.02 3.77 16 41 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 42 H -0.02 -1.41 8.10 -2.39 -0.02 -1.43 16 43 H -0.02 -1.31 8.10 -2.39 -0.02 -1.33 16 44 H 0.26 15.90 8.31 -92.70 -0.77 15.13 16 45 H 0.08 1.52 7.99 -2.38 -0.02 1.50 16 46 H 0.08 1.75 7.39 -2.39 -0.02 1.73 16 Total: -1.00 -80.10 374.12 5.97 -74.13 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.93 Total: 16.93 kcal Atomic # 6 Polarization: -31.21 SS G_CDS: 4.60 Total: -26.60 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -1.53 Total: -80.85 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.05 Total: -30.55 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -80.10 5.97 -74.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425112424.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.185 kcal (2) G-P(sol) polarization free energy of solvation -80.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds