Wall clock time and date at job start Tue Mar 31 2020 08:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47084 * 2 1 4 4 H 1.08998 * 109.47249 * 305.00532 * 3 2 1 5 5 C 1.53004 * 109.46739 * 64.99993 * 3 2 1 6 6 C 1.53003 * 109.46739 * 179.97438 * 5 3 2 7 7 C 1.52992 * 109.47331 * 299.99891 * 6 5 3 8 8 C 1.52999 * 109.47180 * 59.99997 * 7 6 5 9 9 C 1.52992 * 109.47331 * 184.99884 * 3 2 1 10 10 H 1.09000 * 109.47490 * 60.00166 * 9 3 2 11 11 C 1.50705 * 109.47165 * 300.00229 * 9 3 2 12 12 O 1.21281 * 120.00224 * 359.97438 * 11 9 3 13 13 N 1.34773 * 119.99966 * 180.02562 * 11 9 3 14 14 C 1.39240 * 119.99937 * 175.70961 * 13 11 9 15 15 C 1.39487 * 119.83147 * 215.01664 * 14 13 11 16 16 C 1.36372 * 120.16995 * 179.75601 * 15 14 13 17 17 C 1.40874 * 119.82547 * 0.51770 * 16 15 14 18 18 C 1.41152 * 120.16182 * 179.71852 * 17 16 15 19 19 H 1.08003 * 119.99882 * 214.79442 * 18 17 16 20 20 C 1.39905 * 120.00082 * 34.80051 * 18 17 16 21 21 N 1.30865 * 120.00195 * 355.56632 * 20 18 17 22 22 Si 1.86804 * 119.99953 * 175.57109 * 20 18 17 23 23 H 1.48500 * 109.47017 * 89.99552 * 22 20 18 24 24 H 1.48502 * 109.47385 * 209.99392 * 22 20 18 25 25 H 1.48506 * 109.46945 * 329.99716 * 22 20 18 26 26 C 1.40871 * 119.67157 * 359.73235 * 17 16 15 27 27 C 1.36374 * 119.83035 * 0.02562 * 26 17 16 28 28 H 1.09002 * 109.46783 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47334 * 299.99659 * 1 2 3 30 30 H 1.09000 * 109.46997 * 60.00177 * 1 2 3 31 31 H 1.08999 * 109.47334 * 240.00341 * 2 1 3 32 32 H 1.09000 * 109.46997 * 119.99823 * 2 1 3 33 33 H 1.09001 * 109.47189 * 299.99796 * 5 3 2 34 34 H 1.08995 * 109.47513 * 60.00093 * 5 3 2 35 35 H 1.08998 * 109.47249 * 60.00539 * 6 5 3 36 36 H 1.09000 * 109.46697 * 179.97438 * 6 5 3 37 37 H 1.09007 * 109.47304 * 299.99951 * 7 6 5 38 38 H 1.09001 * 109.47610 * 180.02562 * 7 6 5 39 39 H 1.09001 * 109.47508 * 179.97438 * 8 7 6 40 40 H 1.09004 * 109.47287 * 60.00247 * 8 7 6 41 41 H 0.97004 * 120.00365 * 355.70435 * 13 11 9 42 42 H 1.07995 * 119.91450 * 0.02562 * 15 14 13 43 43 H 1.07999 * 120.08993 * 180.25469 * 16 15 14 44 44 H 0.96996 * 120.00184 * 180.02562 * 21 20 18 45 45 H 1.08000 * 120.08310 * 180.02562 * 26 17 16 46 46 H 1.07995 * 119.91728 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 2.1457 3.5688 1.3077 7 6 3.6705 3.5702 1.1823 8 6 4.0753 2.8861 -0.1250 9 6 3.5647 1.4444 -0.1257 10 1 3.8532 0.9571 -1.0571 11 6 4.1657 0.6991 1.0382 12 8 3.4453 0.2146 1.8851 13 7 5.5036 0.5719 1.1385 14 6 6.0630 -0.0381 2.2582 15 6 7.2826 0.4166 2.7596 16 6 7.8342 -0.1726 3.8588 17 6 7.1744 -1.2503 4.4815 18 6 7.7419 -1.8692 5.6161 19 1 7.6234 -2.9320 5.7674 20 6 8.4579 -1.1060 6.5446 21 7 8.6758 0.1644 6.3183 22 14 9.1028 -1.9003 8.1075 23 1 10.4679 -2.4326 7.8653 24 1 9.1516 -0.8885 9.1934 25 1 8.2018 -3.0114 8.5062 26 6 5.9456 -1.7073 3.9661 27 6 5.4039 -1.1048 2.8692 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.5488 2.1252 1.3969 34 1 2.0697 1.5875 2.1492 35 1 1.7114 4.1082 0.4659 36 1 1.8569 4.0562 2.2389 37 1 4.1048 3.0309 2.0242 38 1 4.0343 4.5977 1.1830 39 1 5.1616 2.8874 -0.2146 40 1 3.6411 3.4254 -0.9669 41 1 6.0770 0.9053 0.4306 42 1 7.7892 1.2403 2.2786 43 1 8.7766 0.1832 4.2483 44 1 9.1725 0.6935 6.9619 45 1 5.4338 -2.5327 4.4386 46 1 4.4621 -1.4542 2.4727 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000474287607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:17 Heat of formation + Delta-G solvation = -43.538838 kcal Electronic energy + Delta-G solvation = -25046.527061 eV Core-core repulsion = 21706.401547 eV Total energy + Delta-G solvation = -3340.125514 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.64252 -38.14188 -36.61865 -34.59256 -33.75421 -32.87444 -31.11612 -29.54132 -28.94288 -28.69293 -25.20235 -23.77099 -23.24410 -21.50724 -21.04382 -20.71469 -20.10365 -18.92520 -17.30150 -16.49301 -16.16957 -15.64187 -15.20895 -14.88768 -14.48827 -14.07391 -13.85090 -13.59868 -13.46613 -13.23087 -12.91354 -12.73885 -12.52059 -12.11989 -12.07163 -11.84636 -11.66920 -11.45329 -11.36088 -11.31804 -11.14018 -11.03241 -10.90626 -10.77243 -10.59088 -10.39100 -9.94713 -9.91097 -9.89423 -9.45460 -9.32167 -8.92114 -8.66480 -7.52370 -6.82912 -6.59992 -4.32410 2.59692 3.04982 3.09753 3.11443 3.15199 3.38135 3.79908 3.99485 4.59971 4.70536 4.74758 4.79480 5.12945 5.16439 5.27813 5.31216 5.40294 5.48438 5.52745 5.59063 5.67501 5.71266 5.75039 5.86341 5.93218 5.97786 6.06185 6.18222 6.21194 6.28824 6.31207 6.32298 6.45728 6.46356 6.62196 6.71844 6.87222 6.97439 7.09497 7.24931 7.32372 7.66015 7.78726 7.91817 8.08701 8.30987 8.34693 8.65055 8.83497 8.94766 9.03551 10.31009 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.023516 B = 0.003453 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.392208 B = 8106.006940 C = 8471.230742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C -0.058 4.058 4 H 0.066 0.934 5 C -0.131 4.131 6 C -0.116 4.116 7 C -0.124 4.124 8 C -0.107 4.107 9 C -0.105 4.105 10 H 0.089 0.911 11 C 0.508 3.492 12 O -0.522 6.522 13 N -0.653 5.653 14 C 0.008 3.992 15 C -0.123 4.123 16 C -0.141 4.141 17 C 0.099 3.901 18 C -0.462 4.462 19 H 0.075 0.925 20 C 0.070 3.930 21 N -0.813 5.813 22 Si 0.914 3.086 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.206 4.206 27 C -0.086 4.086 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.096 0.904 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.393 0.607 42 H 0.089 0.911 43 H 0.131 0.869 44 H 0.277 0.723 45 H 0.095 0.905 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.524 5.870 -12.481 16.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.077 4.077 4 H 0.085 0.915 5 C -0.168 4.168 6 C -0.154 4.154 7 C -0.162 4.162 8 C -0.145 4.145 9 C -0.127 4.127 10 H 0.107 0.893 11 C 0.296 3.704 12 O -0.399 6.399 13 N -0.296 5.296 14 C -0.085 4.085 15 C -0.143 4.143 16 C -0.161 4.161 17 C 0.097 3.903 18 C -0.493 4.493 19 H 0.093 0.907 20 C -0.145 4.145 21 N -0.440 5.440 22 Si 0.739 3.261 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.187 1.187 26 C -0.226 4.226 27 C -0.106 4.106 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.226 0.774 42 H 0.108 0.892 43 H 0.149 0.851 44 H 0.088 0.912 45 H 0.113 0.887 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.940 5.745 -11.763 15.853 hybrid contribution 0.633 0.066 0.341 0.722 sum -8.307 5.811 -11.423 15.272 Atomic orbital electron populations 1.21774 0.96465 1.01072 1.01236 1.21838 0.95401 0.96455 1.03449 1.20872 0.92060 0.96601 0.98197 0.91544 1.21912 1.00262 0.95214 0.99429 1.21514 0.95413 0.97403 1.01073 1.21568 0.96435 1.00334 0.97846 1.21492 1.00588 0.93839 0.98610 1.21411 0.97173 0.96453 0.97624 0.89256 1.20440 0.82288 0.80387 0.87318 1.90540 1.59510 1.47906 1.41939 1.43078 1.06534 1.58721 1.21238 1.17279 0.97860 0.99367 0.93975 1.20318 0.95868 0.99831 0.98285 1.21183 1.01269 0.99566 0.94060 1.17712 0.89725 0.91731 0.91168 1.19492 1.28955 0.95977 1.04892 0.90687 1.25862 0.93907 0.94682 1.00032 1.69758 1.32198 1.06868 1.35195 0.86214 0.79598 0.79660 0.80594 1.19556 1.20322 1.18738 1.20809 0.97177 1.04256 1.00325 1.20385 0.98893 0.94381 0.96929 0.93233 0.92563 0.93590 0.93139 0.88701 0.92466 0.88529 0.92710 0.92343 0.91407 0.92093 0.91637 0.91229 0.77358 0.89240 0.85132 0.91202 0.88718 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.67 37.16 0.36 -1.25 16 2 C -0.13 -1.69 5.03 -26.73 -0.13 -1.82 16 3 C -0.06 -0.69 1.93 -90.62 -0.18 -0.87 16 4 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 5 C -0.13 -1.70 4.69 -26.73 -0.13 -1.83 16 6 C -0.12 -1.36 5.92 -26.73 -0.16 -1.52 16 7 C -0.12 -1.52 5.70 -26.74 -0.15 -1.67 16 8 C -0.11 -1.14 5.36 -26.76 -0.14 -1.28 16 9 C -0.11 -1.27 2.54 -91.80 -0.23 -1.50 16 10 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 11 C 0.51 8.31 5.19 -10.98 -0.06 8.26 16 12 O -0.52 -10.23 8.79 5.56 0.05 -10.18 16 13 N -0.65 -11.13 5.16 -9.74 -0.05 -11.18 16 14 C 0.01 0.16 6.31 -83.57 -0.53 -0.36 16 15 C -0.12 -2.78 9.90 -39.79 -0.39 -3.18 16 16 C -0.14 -3.62 8.62 -39.26 -0.34 -3.96 16 17 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 18 C -0.46 -12.41 9.02 -37.85 -0.34 -12.75 16 19 H 0.07 1.94 7.85 -52.48 -0.41 1.52 16 20 C 0.07 1.78 5.42 -17.34 -0.09 1.69 16 21 N -0.81 -21.24 10.60 55.55 0.59 -20.65 16 22 Si 0.91 19.12 29.56 -169.99 -5.03 14.09 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 25 H -0.26 -5.48 7.11 56.52 0.40 -5.07 16 26 C -0.21 -5.21 9.74 -39.26 -0.38 -5.59 16 27 C -0.09 -2.03 8.61 -39.79 -0.34 -2.37 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.62 6.56 -51.93 -0.34 0.28 16 30 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 1.49 5.64 -51.93 -0.29 1.20 16 33 H 0.06 0.69 6.57 -51.93 -0.34 0.35 16 34 H 0.10 1.60 5.51 -51.93 -0.29 1.31 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.05 7.22 -51.92 -0.37 0.68 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.39 5.39 8.36 -40.82 -0.34 5.05 16 42 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.13 3.48 6.13 -52.49 -0.32 3.16 16 44 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 45 H 0.09 2.29 8.06 -52.49 -0.42 1.87 16 46 H 0.11 2.48 6.22 -52.49 -0.33 2.16 16 LS Contribution 350.04 15.07 5.28 5.28 Total: -1.00 -28.54 350.04 -10.22 -38.76 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -7.22 Total: 11.84 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: -3.83 Total: -27.95 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: 0.54 Total: -31.83 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.05 Total: -10.18 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.54 -10.22 -38.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000474287607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.781 kcal (2) G-P(sol) polarization free energy of solvation -28.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds