Wall clock time and date at job start Tue Mar 31 2020 08:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47272 * 2 1 4 4 N 1.46493 * 109.46932 * 120.00279 * 2 1 3 5 5 C 1.46501 * 120.00004 * 294.89463 * 4 2 1 6 6 C 1.50705 * 109.46851 * 270.00036 * 5 4 2 7 7 H 1.07999 * 120.00113 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99873 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00063 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99973 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46734 * 90.00379 * 10 8 6 12 12 H 1.48498 * 109.47164 * 210.00358 * 10 8 6 13 13 H 1.48496 * 109.47026 * 330.00138 * 10 8 6 14 14 C 1.34781 * 120.00280 * 114.89743 * 4 2 1 15 15 O 1.21275 * 120.00141 * 184.94612 * 14 4 2 16 16 C 1.50704 * 119.99541 * 4.93955 * 14 4 2 17 17 C 1.52998 * 109.46688 * 187.77402 * 16 14 4 18 18 H 1.09004 * 110.35032 * 306.83133 * 17 16 14 19 19 C 1.54347 * 110.30319 * 184.71176 * 17 16 14 20 20 C 1.54350 * 102.39316 * 214.73132 * 19 17 16 21 21 C 1.51371 * 105.16751 * 26.34154 * 20 19 17 22 22 C 1.38498 * 130.38720 * 162.81484 * 21 20 19 23 23 C 1.38103 * 120.21459 * 180.02562 * 22 21 20 24 24 C 1.38251 * 119.93309 * 359.92923 * 23 22 21 25 25 C 1.38101 * 119.93713 * 0.10263 * 24 23 22 26 26 C 1.38205 * 109.76069 * 342.81337 * 21 20 19 27 27 H 1.09003 * 109.47105 * 305.06735 * 1 2 3 28 28 H 1.09006 * 109.46952 * 65.06381 * 1 2 3 29 29 H 1.08998 * 109.47741 * 185.06693 * 1 2 3 30 30 H 1.09003 * 109.46748 * 239.99895 * 2 1 3 31 31 H 1.09000 * 109.47126 * 184.74695 * 3 2 1 32 32 H 1.09001 * 109.47147 * 304.74405 * 3 2 1 33 33 H 1.09003 * 109.47332 * 64.74860 * 3 2 1 34 34 H 1.08988 * 109.47240 * 29.99855 * 5 4 2 35 35 H 1.09002 * 109.46958 * 150.00732 * 5 4 2 36 36 H 0.97002 * 120.00131 * 180.02562 * 9 8 6 37 37 H 1.09000 * 109.47153 * 67.77545 * 16 14 4 38 38 H 1.08999 * 109.47493 * 307.77255 * 16 14 4 39 39 H 1.09004 * 110.81854 * 332.95332 * 19 17 16 40 40 H 1.09000 * 110.82346 * 96.30432 * 19 17 16 41 41 H 1.08999 * 110.30588 * 145.26903 * 20 19 17 42 42 H 1.08997 * 110.29736 * 267.32313 * 20 19 17 43 43 H 1.08002 * 119.89244 * 359.97438 * 22 21 20 44 44 H 1.08003 * 120.03307 * 180.02562 * 23 22 21 45 45 H 1.08008 * 120.02845 * 180.02562 * 24 23 22 46 46 H 1.08002 * 119.89583 * 180.21369 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7589 -0.1284 2.5238 6 6 2.8851 0.7972 2.9061 7 1 3.7112 0.9515 2.2277 8 6 2.8609 1.4470 4.1219 9 7 3.8434 2.2551 4.4553 10 14 1.4317 1.1807 5.2949 11 1 1.7348 0.0374 6.1928 12 1 1.2230 2.4062 6.1072 13 1 0.2012 0.8869 4.5173 14 6 2.7062 -1.8433 1.0751 15 8 3.0326 -2.4616 2.0661 16 6 3.0696 -2.3640 -0.2916 17 6 3.6682 -3.7659 -0.1607 18 1 4.4911 -3.7615 0.5541 19 6 4.1557 -4.2707 -1.5354 20 6 3.8593 -5.7834 -1.4570 21 6 2.7142 -5.9123 -0.4755 22 6 1.8377 -6.9610 -0.2519 23 6 0.8547 -6.8518 0.7120 24 6 0.7454 -5.6927 1.4576 25 6 1.6181 -4.6456 1.2356 26 6 2.6044 -4.7533 0.2692 27 1 -0.3633 0.5904 0.8411 28 1 -0.3633 0.4333 -0.9319 29 1 -0.3634 -1.0236 0.0908 30 1 1.8933 -0.5139 -0.8900 31 1 3.1267 1.4436 -0.0850 32 1 1.6090 1.9802 -0.8444 33 1 1.7478 1.9312 0.9295 34 1 0.8217 0.4278 2.5061 35 1 1.6888 -0.9356 3.2529 36 1 3.8265 2.7120 5.3108 37 1 3.8002 -1.6985 -0.7515 38 1 2.1755 -2.4073 -0.9136 39 1 3.5886 -3.8060 -2.3421 40 1 5.2231 -4.0877 -1.6591 41 1 3.5634 -6.1621 -2.4353 42 1 4.7342 -6.3217 -1.0925 43 1 1.9226 -7.8669 -0.8338 44 1 0.1730 -7.6716 0.8842 45 1 -0.0225 -5.6057 2.2121 46 1 1.5344 -3.7418 1.8209 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609661237.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:34 Heat of formation + Delta-G solvation = -17.437374 kcal Electronic energy + Delta-G solvation = -25359.802853 eV Core-core repulsion = 22020.809183 eV Total energy + Delta-G solvation = -3338.993669 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.41879 -38.97297 -36.20090 -35.71357 -32.81667 -31.93361 -30.99771 -29.95661 -28.79205 -27.87434 -26.72813 -25.09111 -22.55303 -22.29639 -21.33997 -20.81654 -20.00230 -17.93851 -16.97438 -16.75524 -16.35128 -15.53820 -15.06956 -14.97504 -14.78620 -14.56878 -13.93918 -13.60380 -13.50038 -13.12390 -12.94255 -12.57605 -12.53880 -12.41236 -12.22009 -11.93685 -11.89437 -11.66829 -11.58808 -11.31638 -11.14744 -10.96935 -10.93261 -10.82711 -10.80225 -10.49465 -10.29353 -10.26721 -10.05886 -9.45646 -8.94270 -8.59964 -8.57083 -8.36656 -7.66400 -6.07450 -4.04777 1.51105 1.59588 3.29147 3.35071 3.36709 3.37664 3.80626 3.95507 4.40495 4.45387 4.60322 4.89162 4.96003 5.13646 5.17148 5.21399 5.25126 5.27654 5.43287 5.46520 5.50695 5.60780 5.62546 5.64647 5.65746 5.82862 5.88234 5.95001 5.97240 6.02897 6.10727 6.16279 6.26623 6.30741 6.36687 6.38931 6.55095 6.60359 6.75550 6.78491 6.90985 6.97902 7.02854 7.20450 7.40884 7.63565 8.30711 8.49425 8.95215 9.02111 9.53626 11.05727 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.016990 B = 0.004497 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.643812 B = 6224.808148 C = 6686.292313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.133 3.867 3 C -0.157 4.157 4 N -0.589 5.589 5 C 0.215 3.785 6 C -0.521 4.521 7 H 0.076 0.924 8 C 0.072 3.928 9 N -0.898 5.898 10 Si 0.872 3.128 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.509 3.491 15 O -0.537 6.537 16 C -0.134 4.134 17 C -0.038 4.038 18 H 0.097 0.903 19 C -0.117 4.117 20 C -0.078 4.078 21 C -0.106 4.106 22 C -0.117 4.117 23 C -0.126 4.126 24 C -0.126 4.126 25 C -0.097 4.097 26 C -0.076 4.076 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.082 0.918 34 H 0.029 0.971 35 H 0.035 0.965 36 H 0.264 0.736 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.285 -12.813 -14.549 20.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.028 3.972 3 C -0.214 4.214 4 N -0.320 5.320 5 C 0.094 3.906 6 C -0.559 4.559 7 H 0.094 0.906 8 C -0.130 4.130 9 N -0.537 5.537 10 Si 0.699 3.301 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.191 1.191 14 C 0.296 3.704 15 O -0.416 6.416 16 C -0.174 4.174 17 C -0.056 4.056 18 H 0.115 0.885 19 C -0.154 4.154 20 C -0.115 4.115 21 C -0.106 4.106 22 C -0.135 4.135 23 C -0.144 4.144 24 C -0.145 4.145 25 C -0.114 4.114 26 C -0.076 4.076 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.137 0.863 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.060 -12.992 -13.869 19.665 hybrid contribution -0.715 0.063 0.828 1.096 sum -5.775 -12.928 -13.040 19.249 Atomic orbital electron populations 1.22185 0.95882 1.01903 1.02114 1.21039 0.93728 0.94528 0.87894 1.22131 1.01442 0.95080 1.02792 1.48042 1.53738 1.22249 1.08019 1.19594 0.96915 0.94278 0.79771 1.21335 1.06622 1.24703 1.03280 0.90596 1.24842 0.95805 0.94855 0.97503 1.69891 1.31784 1.29446 1.22565 0.86912 0.83405 0.77935 0.81811 1.20005 1.21181 1.19134 1.20325 0.78317 0.80880 0.90849 1.90639 1.53735 1.57485 1.39728 1.21779 1.02136 0.96910 0.96593 1.20534 0.96570 0.91697 0.96796 0.88451 1.22392 1.01535 0.94771 0.96717 1.20996 0.95934 0.96924 0.97693 1.20586 0.97011 0.94616 0.98352 1.20491 0.95879 0.97946 0.99209 1.20971 0.98712 0.97910 0.96786 1.21102 0.99689 0.93747 0.99915 1.21325 0.93527 1.00039 0.96528 1.20443 0.95875 0.95397 0.95856 0.91846 0.92096 0.92843 0.90395 0.92452 0.93278 0.89880 0.95351 0.94724 0.92656 0.88842 0.89631 0.90856 0.90414 0.91042 0.90433 0.86836 0.86462 0.86337 0.84397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.17 37.16 0.34 -1.89 16 2 C 0.13 2.07 3.12 -67.94 -0.21 1.86 16 3 C -0.16 -2.58 8.52 37.15 0.32 -2.26 16 4 N -0.59 -11.68 2.38 -167.48 -0.40 -12.08 16 5 C 0.22 5.12 3.54 -5.19 -0.02 5.10 16 6 C -0.52 -14.44 8.27 -34.44 -0.28 -14.72 16 7 H 0.08 2.30 7.93 -52.49 -0.42 1.89 16 8 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 9 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 10 Si 0.87 21.48 27.47 -169.99 -4.67 16.81 16 11 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 14 C 0.51 9.94 6.35 -10.98 -0.07 9.87 16 15 O -0.54 -12.49 12.78 5.56 0.07 -12.42 16 16 C -0.13 -1.94 3.51 -27.88 -0.10 -2.04 16 17 C -0.04 -0.53 2.50 -90.74 -0.23 -0.75 16 18 H 0.10 1.57 7.81 -51.93 -0.41 1.16 16 19 C -0.12 -1.21 6.59 -25.32 -0.17 -1.38 16 20 C -0.08 -0.81 6.77 -26.85 -0.18 -0.99 16 21 C -0.11 -1.39 6.14 -104.21 -0.64 -2.03 16 22 C -0.12 -1.43 10.04 -39.54 -0.40 -1.83 16 23 C -0.13 -1.56 10.05 -39.63 -0.40 -1.96 16 24 C -0.13 -1.80 10.05 -39.63 -0.40 -2.20 16 25 C -0.10 -1.60 8.97 -39.53 -0.35 -1.95 16 26 C -0.08 -1.15 5.47 -104.21 -0.57 -1.72 16 27 H 0.06 0.96 7.06 -51.93 -0.37 0.59 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 1.01 5.74 -51.93 -0.30 0.72 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.63 6.59 -51.93 -0.34 1.29 16 34 H 0.03 0.66 5.85 -51.94 -0.30 0.35 16 35 H 0.03 0.89 6.79 -51.93 -0.35 0.54 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.09 1.21 8.13 -51.93 -0.42 0.79 16 38 H 0.09 1.09 7.23 -51.93 -0.38 0.71 16 39 H 0.07 0.67 7.91 -51.93 -0.41 0.26 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 45 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 46 H 0.14 2.63 4.97 -52.49 -0.26 2.37 16 LS Contribution 357.36 15.07 5.39 5.39 Total: -1.00 -32.47 357.36 -9.64 -42.11 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -7.35 Total: 3.70 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -3.46 Total: -16.94 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.37 Total: -38.65 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.07 Total: -12.42 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.47 -9.64 -42.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609661237.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.675 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds