Wall clock time and date at job start Tue Mar 31 2020 08:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46966 * 2 1 4 4 H 1.09000 * 110.81702 * 51.66399 * 3 2 1 5 5 C 1.54890 * 110.75683 * 288.32651 * 3 2 1 6 6 C 1.54259 * 104.19641 * 203.74225 * 5 3 2 7 7 C 1.53870 * 106.60311 * 23.61220 * 6 5 3 8 8 C 1.54275 * 106.59449 * 359.97438 * 7 6 5 9 9 H 1.09000 * 110.48351 * 95.20251 * 8 7 6 10 10 N 1.46501 * 110.48297 * 217.71090 * 8 7 6 11 11 C 1.34769 * 120.00221 * 273.54325 * 10 8 7 12 12 O 1.21283 * 120.00109 * 0.02562 * 11 10 8 13 13 C 1.50701 * 120.00170 * 180.02562 * 11 10 8 14 14 C 1.50700 * 109.47293 * 180.02562 * 13 11 10 15 15 C 1.37643 * 120.12599 * 265.00345 * 14 13 11 16 16 C 1.38615 * 120.24942 * 179.97438 * 15 14 13 17 17 C 1.38665 * 120.49686 * 0.02562 * 16 15 14 18 18 C 1.37589 * 120.24998 * 0.02562 * 17 16 15 19 19 C 1.40697 * 120.13242 * 84.97742 * 14 13 11 20 20 C 1.41394 * 120.23710 * 0.02642 * 19 14 13 21 21 H 1.08004 * 120.00279 * 334.04008 * 20 19 14 22 22 C 1.39944 * 120.00228 * 154.04224 * 20 19 14 23 23 N 1.30828 * 119.99706 * 343.66920 * 22 20 19 24 24 Si 1.86800 * 120.00646 * 163.66460 * 22 20 19 25 25 H 1.48498 * 109.47129 * 89.99768 * 24 22 20 26 26 H 1.48498 * 109.47309 * 210.00091 * 24 22 20 27 27 H 1.48500 * 109.47097 * 330.00235 * 24 22 20 28 28 H 1.08989 * 109.46838 * 60.00104 * 1 2 3 29 29 H 1.08997 * 109.46691 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47163 * 300.00085 * 1 2 3 31 31 H 1.08996 * 109.47163 * 239.99915 * 2 1 3 32 32 H 1.09002 * 109.47314 * 119.99503 * 2 1 3 33 33 H 1.09001 * 110.48512 * 85.06403 * 5 3 2 34 34 H 1.09002 * 110.48531 * 322.42703 * 5 3 2 35 35 H 1.09000 * 110.03348 * 264.32110 * 6 5 3 36 36 H 1.09009 * 110.06890 * 142.92095 * 6 5 3 37 37 H 1.08994 * 110.03345 * 240.71589 * 7 6 5 38 38 H 1.09001 * 110.03471 * 119.28102 * 7 6 5 39 39 H 0.96995 * 119.99739 * 93.55344 * 10 8 7 40 40 H 1.09000 * 109.46995 * 60.00606 * 13 11 10 41 41 H 1.08994 * 109.47302 * 300.00326 * 13 11 10 42 42 H 1.08004 * 119.87856 * 359.97438 * 15 14 13 43 43 H 1.07995 * 119.75238 * 179.97438 * 16 15 14 44 44 H 1.08000 * 119.87289 * 179.72883 * 17 16 15 45 45 H 1.08007 * 120.13033 * 179.97438 * 18 17 16 46 46 H 0.96997 * 120.00444 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5733 2.0184 0.7992 5 6 1.7936 2.1118 -1.3749 6 6 2.8428 3.2408 -1.4395 7 6 3.9808 2.8387 -0.4851 8 6 3.5830 1.4794 0.1267 9 1 4.0331 0.6615 -0.4360 10 7 3.9842 1.4137 1.5342 11 6 5.2264 1.0070 1.8625 12 8 6.0124 0.6959 0.9928 13 6 5.6390 0.9388 3.3103 14 6 7.0643 0.4588 3.4045 15 6 7.3317 -0.8762 3.6069 16 6 8.6419 -1.3206 3.6934 17 6 9.6968 -0.4282 3.5779 18 6 9.4530 0.9109 3.3764 19 6 8.1270 1.3732 3.2853 20 6 7.8643 2.7469 3.0772 21 1 6.9441 3.0550 2.6031 22 6 8.7966 3.7073 3.4856 23 7 9.7425 3.3834 4.3294 24 14 8.6908 5.4517 2.8258 25 1 7.8303 6.2676 3.7196 26 1 10.0514 6.0441 2.7724 27 1 8.1064 5.4300 1.4608 28 1 -0.3632 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 0.7858 2.5244 -1.4232 34 1 1.9529 1.3963 -2.1816 35 1 2.3988 4.1821 -1.1155 36 1 3.2248 3.3388 -2.4558 37 1 4.0891 3.5847 0.3021 38 1 4.9149 2.7405 -1.0382 39 1 3.3558 1.6627 2.2297 40 1 4.9862 0.2464 3.8419 41 1 5.5593 1.9295 3.7579 42 1 6.5177 -1.5801 3.6987 43 1 8.8425 -2.3698 3.8528 44 1 10.7136 -0.7848 3.6513 45 1 10.2762 1.6044 3.2871 46 1 10.3886 4.0491 4.6127 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776977832.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:59 Heat of formation + Delta-G solvation = -51.513394 kcal Electronic energy + Delta-G solvation = -24696.422561 eV Core-core repulsion = 21355.951244 eV Total energy + Delta-G solvation = -3340.471316 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.69457 -38.18912 -37.03112 -33.58315 -33.54419 -33.03572 -31.58921 -29.40654 -28.01696 -27.71089 -26.21769 -24.86414 -22.76253 -21.01189 -20.85181 -20.34525 -19.77079 -19.04984 -17.13334 -16.45004 -16.23888 -15.38954 -15.16815 -14.67472 -14.49139 -14.43248 -13.92483 -13.49610 -13.43774 -13.16300 -13.04278 -12.87381 -12.54284 -12.26950 -11.94086 -11.66794 -11.54438 -11.52047 -11.17986 -11.10526 -11.01956 -10.93334 -10.79743 -10.69063 -10.61157 -10.55436 -10.36653 -10.35401 -9.43189 -9.32738 -9.11635 -9.05458 -8.58063 -7.25832 -7.23354 -6.69028 -4.29020 2.82938 3.02683 3.09160 3.14673 3.31061 3.42510 3.74990 3.97341 4.41467 4.56380 4.69921 4.72001 5.04142 5.13125 5.21860 5.39726 5.44854 5.46703 5.55657 5.61895 5.64916 5.72837 5.83860 5.85919 5.88734 5.97184 6.02043 6.08734 6.11151 6.17454 6.24803 6.33625 6.39359 6.40293 6.49375 6.56218 6.85706 6.97067 7.13640 7.34905 7.47727 7.69743 7.95876 8.04750 8.14027 8.18438 8.36984 8.70216 8.96409 8.97736 9.07102 10.25237 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.014149 B = 0.004514 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.484477 B = 6201.172960 C = 7716.898015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.098 4.098 4 H 0.080 0.920 5 C -0.116 4.116 6 C -0.123 4.123 7 C -0.139 4.139 8 C 0.148 3.852 9 H 0.088 0.912 10 N -0.739 5.739 11 C 0.515 3.485 12 O -0.521 6.521 13 C -0.072 4.072 14 C -0.179 4.179 15 C -0.082 4.082 16 C -0.240 4.240 17 C -0.108 4.108 18 C -0.160 4.160 19 C 0.129 3.871 20 C -0.456 4.456 21 H 0.074 0.926 22 C 0.077 3.923 23 N -0.796 5.796 24 Si 0.901 3.099 25 H -0.270 1.270 26 H -0.276 1.276 27 H -0.262 1.262 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.394 0.606 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.116 0.884 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.805 -0.248 -6.118 16.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.117 4.117 4 H 0.098 0.902 5 C -0.154 4.154 6 C -0.161 4.161 7 C -0.177 4.177 8 C 0.043 3.957 9 H 0.106 0.894 10 N -0.392 5.392 11 C 0.302 3.698 12 O -0.394 6.394 13 C -0.111 4.111 14 C -0.181 4.181 15 C -0.100 4.100 16 C -0.259 4.259 17 C -0.126 4.126 18 C -0.179 4.179 19 C 0.127 3.873 20 C -0.485 4.485 21 H 0.092 0.908 22 C -0.140 4.140 23 N -0.422 5.422 24 Si 0.725 3.275 25 H -0.196 1.196 26 H -0.201 1.201 27 H -0.186 1.186 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.228 0.772 40 H 0.092 0.908 41 H 0.113 0.887 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.134 0.866 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.991 -0.378 -6.621 16.393 hybrid contribution -0.200 1.010 0.099 1.035 sum -15.192 0.632 -6.522 16.545 Atomic orbital electron populations 1.21770 0.95907 1.01414 1.01676 1.21527 0.95628 0.95845 1.02436 1.22409 0.94724 0.96379 0.98180 0.90206 1.22360 0.98788 0.97597 0.96613 1.22095 0.95996 0.98289 0.99685 1.22568 0.98642 0.97430 0.99108 1.21726 0.93145 0.97754 0.83063 0.89357 1.46177 1.15103 1.70628 1.07305 1.21209 0.80535 0.75495 0.92521 1.90673 1.50829 1.46858 1.51083 1.20270 0.96234 1.02968 0.91670 1.19062 0.92017 0.93657 1.13384 1.20296 0.95212 0.94215 1.00279 1.20299 0.93026 0.97199 1.15382 1.20669 0.96486 0.94342 1.01118 1.21286 0.97356 0.93649 1.05604 1.17326 0.90569 0.92370 0.87048 1.19458 1.03877 0.90689 1.34519 0.90819 1.25868 0.94151 1.01075 0.92898 1.69822 1.13113 1.36123 1.23146 0.86432 0.78488 0.81942 0.80604 1.19575 1.20104 1.18551 0.92774 0.92953 0.92841 0.91855 0.91690 0.91601 0.91409 0.91975 0.91903 0.91303 0.91227 0.77246 0.90755 0.88694 0.89829 0.89724 0.89635 0.86578 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.81 37.16 0.36 -0.79 16 2 C -0.12 -1.09 5.43 -26.73 -0.15 -1.23 16 3 C -0.10 -0.96 2.46 -88.64 -0.22 -1.18 16 4 H 0.08 0.73 8.02 -51.93 -0.42 0.32 16 5 C -0.12 -1.04 5.69 -25.08 -0.14 -1.19 16 6 C -0.12 -1.26 6.80 -25.62 -0.17 -1.44 16 7 C -0.14 -1.88 6.53 -25.61 -0.17 -2.05 16 8 C 0.15 1.99 2.60 -66.28 -0.17 1.82 16 9 H 0.09 1.38 7.57 -51.93 -0.39 0.99 16 10 N -0.74 -10.79 5.11 -52.21 -0.27 -11.05 16 11 C 0.51 10.08 7.46 -10.99 -0.08 10.00 16 12 O -0.52 -12.60 15.74 5.55 0.09 -12.52 16 13 C -0.07 -1.42 5.18 -29.03 -0.15 -1.57 16 14 C -0.18 -4.39 4.43 -103.91 -0.46 -4.85 16 15 C -0.08 -1.92 9.66 -39.66 -0.38 -2.31 16 16 C -0.24 -5.70 10.05 -39.28 -0.39 -6.09 16 17 C -0.11 -2.68 10.02 -39.66 -0.40 -3.08 16 18 C -0.16 -4.34 8.68 -38.88 -0.34 -4.68 16 19 C 0.13 3.51 5.56 -106.83 -0.59 2.91 16 20 C -0.46 -12.15 8.14 -37.74 -0.31 -12.46 16 21 H 0.07 1.92 6.68 -52.48 -0.35 1.57 16 22 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 23 N -0.80 -20.82 10.96 55.55 0.61 -20.21 16 24 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 27 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 28 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.61 7.99 -51.93 -0.41 0.19 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.07 0.60 7.93 -51.93 -0.41 0.19 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 37 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.39 4.56 8.53 -40.82 -0.35 4.22 16 40 H 0.07 1.23 8.05 -51.93 -0.42 0.82 16 41 H 0.09 1.85 7.06 -51.93 -0.37 1.49 16 42 H 0.08 1.73 8.06 -52.48 -0.42 1.31 16 43 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 45 H 0.12 3.24 6.21 -52.48 -0.33 2.92 16 46 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 LS Contribution 369.56 15.07 5.57 5.57 Total: -1.00 -30.65 369.56 -10.50 -41.16 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -7.62 Total: 9.28 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: -3.85 Total: -26.30 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: 0.34 Total: -31.27 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.65 -10.50 -41.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776977832.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.354 kcal (2) G-P(sol) polarization free energy of solvation -30.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds