Wall clock time and date at job start Tue Mar 31 2020 08:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47058 * 2 1 4 4 C 1.53000 * 109.47445 * 120.00084 * 2 1 3 5 5 H 1.09009 * 109.46942 * 289.64564 * 4 2 1 6 6 C 1.52999 * 109.47445 * 169.64762 * 4 2 1 7 7 N 1.46495 * 109.47290 * 49.64357 * 4 2 1 8 8 C 1.34774 * 120.00587 * 247.38607 * 7 4 2 9 9 O 1.21587 * 119.99670 * 356.39281 * 8 7 4 10 10 C 1.47646 * 120.00188 * 176.38544 * 8 7 4 11 11 C 1.40011 * 119.89509 * 213.94093 * 10 8 7 12 12 C 1.36321 * 120.10399 * 179.97438 * 11 10 8 13 13 C 1.40884 * 119.89588 * 0.02562 * 12 11 10 14 14 C 1.41099 * 120.10832 * 179.97438 * 13 12 11 15 15 H 1.08008 * 119.99541 * 326.05822 * 14 13 12 16 16 C 1.40228 * 120.00557 * 146.05929 * 14 13 12 17 17 N 1.30647 * 119.99740 * 2.46112 * 16 14 13 18 18 Si 1.86797 * 120.00218 * 182.46734 * 16 14 13 19 19 H 1.48503 * 109.47086 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47394 * 119.99848 * 18 16 14 21 21 H 1.48508 * 109.46870 * 239.99969 * 18 16 14 22 22 C 1.40895 * 119.78970 * 0.25018 * 13 12 11 23 23 C 1.36324 * 119.89052 * 359.48839 * 22 13 12 24 24 C 1.46504 * 119.99375 * 67.38459 * 7 4 2 25 25 C 1.53001 * 117.50082 * 301.46319 * 24 7 4 26 26 C 1.53003 * 117.49773 * 232.83960 * 24 7 4 27 27 H 1.09007 * 109.46952 * 299.99860 * 1 2 3 28 28 H 1.08994 * 109.47289 * 59.99738 * 1 2 3 29 29 H 1.09000 * 109.47039 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47387 * 240.00278 * 2 1 3 31 31 H 1.09003 * 109.46782 * 65.36249 * 3 2 1 32 32 H 1.09001 * 109.47016 * 185.36136 * 3 2 1 33 33 H 1.08994 * 109.47077 * 305.36495 * 3 2 1 34 34 H 1.09004 * 109.46918 * 300.00313 * 6 4 2 35 35 H 1.09006 * 109.47074 * 60.00006 * 6 4 2 36 36 H 1.08994 * 109.47322 * 180.02562 * 6 4 2 37 37 H 1.08001 * 119.94754 * 0.02562 * 11 10 8 38 38 H 1.08001 * 120.04753 * 179.97438 * 12 11 10 39 39 H 0.96998 * 120.00015 * 180.02562 * 17 16 14 40 40 H 1.08000 * 120.05070 * 179.72480 * 22 13 12 41 41 H 1.08001 * 119.94297 * 180.25083 * 23 22 13 42 42 H 1.08994 * 115.54929 * 87.17795 * 24 7 4 43 43 H 1.09001 * 117.49817 * 359.97438 * 25 24 7 44 44 H 1.08998 * 117.49668 * 145.02681 * 25 24 7 45 45 H 1.09000 * 117.50244 * 214.98184 * 26 24 7 46 46 H 1.09002 * 117.49646 * 0.02562 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.8354 -0.1119 2.1296 6 6 3.5479 -0.9496 1.1264 7 7 1.3597 -2.0120 1.3799 8 6 0.5050 -2.2231 2.4004 9 8 0.3483 -1.3667 3.2491 10 6 -0.2410 -3.4943 2.4876 11 6 -1.5401 -3.5065 3.0096 12 6 -2.2330 -4.6776 3.0917 13 6 -1.6397 -5.8769 2.6507 14 6 -2.3526 -7.0917 2.7340 15 1 -3.0375 -7.2609 3.5519 16 6 -2.1719 -8.0794 1.7551 17 7 -1.3081 -7.8948 0.7926 18 14 -3.1664 -9.6590 1.8273 19 1 -4.0682 -9.6227 3.0066 20 1 -3.9753 -9.7918 0.5890 21 1 -2.2460 -10.8186 1.9441 22 6 -0.3300 -5.8604 2.1315 23 6 0.3531 -4.6836 2.0485 24 6 1.6084 -3.0734 0.4012 25 6 1.3044 -2.7664 -1.0666 26 6 0.3925 -3.7078 -0.2772 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8899 31 1 1.7572 1.9279 0.9342 32 1 3.1258 1.4441 -0.0960 33 1 1.6003 1.9834 -0.8380 34 1 3.7525 -1.5589 0.2460 35 1 4.0542 0.0108 1.0292 36 1 3.9112 -1.4639 2.0161 37 1 -1.9943 -2.5866 3.3471 38 1 -3.2349 -4.6861 3.4949 39 1 -1.1834 -8.5778 0.1152 40 1 0.1306 -6.7780 1.7964 41 1 1.3556 -4.6693 1.6469 42 1 2.4597 -3.7197 0.6146 43 1 0.9190 -1.7748 -1.3040 44 1 1.9560 -3.2106 -1.8190 45 1 0.4441 -4.7713 -0.5104 46 1 -0.5924 -3.3352 0.0044 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270299607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:32 Heat of formation + Delta-G solvation = 12.407614 kcal Electronic energy + Delta-G solvation = -25670.705236 eV Core-core repulsion = 22333.005743 eV Total energy + Delta-G solvation = -3337.699494 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.26731 -37.58692 -36.86056 -35.68753 -33.66131 -32.44245 -30.39799 -29.49496 -29.37599 -27.02886 -25.79647 -23.51783 -22.72104 -22.26689 -21.33180 -20.58758 -19.73797 -18.62573 -17.43891 -16.46517 -16.12591 -15.55617 -15.00135 -14.57039 -14.41793 -14.07927 -13.83237 -13.53550 -13.35665 -12.89008 -12.79674 -12.66435 -12.27319 -12.09039 -12.07621 -11.97739 -11.74482 -11.40415 -11.26353 -11.20123 -11.07793 -11.00117 -10.85333 -10.80481 -10.57525 -10.35876 -10.10285 -9.98410 -9.93326 -9.38003 -9.35497 -8.79966 -8.19737 -7.55238 -7.34191 -6.81483 -4.56237 2.32860 2.96100 3.00629 3.04829 3.06399 3.41517 3.78037 3.86027 4.07474 4.60574 4.76179 4.97679 5.10002 5.19691 5.24177 5.28454 5.41279 5.50516 5.56307 5.57345 5.69829 5.74895 5.86133 5.88116 5.92318 5.95477 6.05951 6.12254 6.20501 6.25846 6.30352 6.31885 6.37729 6.47751 6.57757 6.62562 6.83524 6.93534 7.01802 7.13367 7.21898 7.53737 7.65308 7.88421 7.94791 8.10800 8.16627 8.51264 8.74457 8.82730 9.00607 10.07354 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.025997 B = 0.004040 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.795652 B = 6929.168177 C = 7346.470426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C -0.144 4.144 4 C 0.145 3.855 5 H 0.095 0.905 6 C -0.158 4.158 7 N -0.587 5.587 8 C 0.578 3.422 9 O -0.569 6.569 10 C -0.263 4.263 11 C -0.038 4.038 12 C -0.228 4.228 13 C 0.126 3.874 14 C -0.453 4.453 15 H 0.079 0.921 16 C 0.072 3.928 17 N -0.795 5.795 18 Si 0.916 3.084 19 H -0.260 1.260 20 H -0.273 1.273 21 H -0.273 1.273 22 C -0.169 4.169 23 C -0.062 4.062 24 C 0.074 3.926 25 C -0.209 4.209 26 C -0.145 4.145 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.280 0.720 40 H 0.128 0.872 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.109 0.891 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.779 7.872 -6.196 12.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.130 4.130 3 C -0.202 4.202 4 C 0.042 3.958 5 H 0.113 0.887 6 C -0.216 4.216 7 N -0.319 5.319 8 C 0.373 3.627 9 O -0.449 6.449 10 C -0.267 4.267 11 C -0.057 4.057 12 C -0.248 4.248 13 C 0.123 3.877 14 C -0.483 4.483 15 H 0.098 0.902 16 C -0.145 4.145 17 N -0.421 5.421 18 Si 0.740 3.260 19 H -0.184 1.184 20 H -0.198 1.198 21 H -0.198 1.198 22 C -0.189 4.189 23 C -0.081 4.081 24 C -0.031 4.031 25 C -0.247 4.247 26 C -0.182 4.182 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.146 0.854 41 H 0.118 0.882 42 H 0.126 0.874 43 H 0.123 0.877 44 H 0.111 0.889 45 H 0.127 0.873 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.790 8.201 -5.940 12.192 hybrid contribution -0.414 -0.791 -0.183 0.912 sum 6.376 7.409 -6.123 11.535 Atomic orbital electron populations 1.21866 0.94946 1.02560 1.01163 1.21678 0.96465 0.95995 0.98906 1.21843 1.00698 0.95869 1.01805 1.20988 0.91345 0.84911 0.98585 0.88654 1.22119 0.95460 1.01786 1.02242 1.47310 1.45173 1.12758 1.26663 1.18741 0.77316 0.87290 0.79314 1.90636 1.66394 1.47729 1.40177 1.18905 0.97789 0.91888 1.18126 1.20270 0.92988 0.96935 0.95529 1.20798 0.99521 0.92534 1.11940 1.17804 0.90732 0.91919 0.87223 1.19757 1.21382 0.98691 1.08452 0.90243 1.25970 0.94625 0.99498 0.94450 1.69678 1.28203 1.33885 1.10293 0.86129 0.80028 0.80447 0.79377 1.18413 1.19798 1.19776 1.21203 0.94719 0.97038 1.05926 1.20877 0.98329 0.92502 0.96352 1.21470 1.00552 0.93607 0.87430 1.23849 1.04770 1.02296 0.93744 1.23369 0.95458 0.99265 1.00102 0.92704 0.93289 0.91850 0.90237 0.92651 0.92672 0.92762 0.92221 0.91889 0.92480 0.88817 0.88566 0.90846 0.85413 0.88175 0.87387 0.87655 0.88874 0.87274 0.87999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 7.96 37.16 0.30 -1.74 16 2 C -0.11 -1.35 1.83 -90.62 -0.17 -1.52 16 3 C -0.14 -1.46 8.92 37.16 0.33 -1.13 16 4 C 0.15 2.07 2.25 -67.93 -0.15 1.92 16 5 H 0.10 1.57 6.86 -51.92 -0.36 1.22 16 6 C -0.16 -1.86 8.90 37.16 0.33 -1.53 16 7 N -0.59 -9.77 1.61 -159.75 -0.26 -10.03 16 8 C 0.58 12.08 7.02 -12.42 -0.09 11.99 16 9 O -0.57 -13.38 16.12 5.29 0.09 -13.29 16 10 C -0.26 -5.82 4.37 -104.73 -0.46 -6.28 16 11 C -0.04 -0.88 9.53 -39.61 -0.38 -1.26 16 12 C -0.23 -5.46 9.73 -39.27 -0.38 -5.84 16 13 C 0.13 3.17 5.55 -106.81 -0.59 2.57 16 14 C -0.45 -11.34 9.04 -37.75 -0.34 -11.68 16 15 H 0.08 1.93 7.85 -52.48 -0.41 1.52 16 16 C 0.07 1.69 5.41 -17.31 -0.09 1.60 16 17 N -0.79 -18.86 10.61 55.56 0.59 -18.27 16 18 Si 0.92 17.75 29.56 -169.99 -5.03 12.72 16 19 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 20 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 21 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 22 C -0.17 -4.04 8.60 -39.27 -0.34 -4.38 16 23 C -0.06 -1.33 6.18 -39.61 -0.24 -1.57 16 24 C 0.07 1.11 2.99 -67.93 -0.20 0.90 16 25 C -0.21 -2.69 8.72 -26.73 -0.23 -2.93 16 26 C -0.14 -2.33 6.65 -26.73 -0.18 -2.51 16 27 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 1.00 5.47 -51.93 -0.28 0.71 16 30 H 0.08 0.91 5.58 -51.93 -0.29 0.62 16 31 H 0.05 0.59 8.11 -51.93 -0.42 0.17 16 32 H 0.05 0.49 7.00 -51.93 -0.36 0.13 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.66 7.51 -51.93 -0.39 0.27 16 35 H 0.06 0.62 6.88 -51.93 -0.36 0.26 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 2.09 7.97 -52.49 -0.42 1.68 16 38 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 39 H 0.28 6.06 8.29 -40.82 -0.34 5.72 16 40 H 0.13 3.15 6.15 -52.49 -0.32 2.83 16 41 H 0.10 1.93 4.92 -52.49 -0.26 1.67 16 42 H 0.11 1.54 7.30 -51.93 -0.38 1.16 16 43 H 0.11 1.33 4.03 -51.93 -0.21 1.12 16 44 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.11 1.84 7.92 -51.93 -0.41 1.43 16 46 H 0.10 1.91 7.00 -51.93 -0.36 1.55 16 LS Contribution 350.46 15.07 5.28 5.28 Total: -1.00 -26.76 350.46 -9.12 -35.89 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -6.91 Total: 11.07 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -2.89 Total: -23.37 kcal Atomic # 7 Polarization: -28.63 SS G_CDS: 0.33 Total: -28.30 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.09 Total: -13.29 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -26.76 -9.12 -35.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270299607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.294 kcal (2) G-P(sol) polarization free energy of solvation -26.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds