Wall clock time and date at job start Tue Mar 31 2020 09:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36027 * 120.33404 * 2 1 4 4 C 1.40473 * 119.68873 * 180.02562 * 3 2 1 5 5 C 1.34952 * 120.30358 * 0.02562 * 4 3 2 6 6 N 1.36482 * 120.60946 * 359.97438 * 5 4 3 7 7 C 1.36836 * 132.57200 * 180.31180 * 6 5 4 8 8 C 1.35104 * 107.17974 * 180.09916 * 7 6 5 9 9 C 1.50698 * 125.68503 * 179.87676 * 8 7 6 10 10 N 1.46905 * 109.47194 * 94.71735 * 9 8 7 11 11 C 1.46902 * 110.99800 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.46626 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47127 * 299.99665 * 12 11 10 14 14 C 1.52997 * 109.47164 * 59.99828 * 12 11 10 15 15 C 1.52999 * 109.46623 * 179.97438 * 12 11 10 16 16 C 1.50706 * 109.46953 * 179.97438 * 15 12 11 17 17 H 1.07999 * 119.99816 * 0.02562 * 16 15 12 18 18 C 1.37876 * 120.00344 * 180.02562 * 16 15 12 19 19 N 1.31514 * 119.99769 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00300 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46819 * 59.99744 * 20 18 16 22 22 H 1.48494 * 109.47285 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47196 * 300.00241 * 20 18 16 24 24 N 1.33512 * 108.62590 * 359.61558 * 8 7 6 25 25 C 1.32556 * 109.15990 * 0.23835 * 24 8 7 26 26 H 1.09011 * 109.47157 * 269.93503 * 1 2 3 27 27 H 1.09001 * 109.47277 * 29.92844 * 1 2 3 28 28 H 1.08991 * 109.47391 * 149.93867 * 1 2 3 29 29 H 1.07997 * 120.15882 * 0.04904 * 3 2 1 30 30 H 1.07999 * 119.84923 * 180.02562 * 4 3 2 31 31 H 1.08002 * 119.69326 * 180.02562 * 5 4 3 32 32 H 1.07998 * 126.40791 * 359.95365 * 7 6 5 33 33 H 1.09002 * 109.47213 * 334.71673 * 9 8 7 34 34 H 1.09001 * 109.47086 * 214.71429 * 9 8 7 35 35 H 1.00904 * 110.99696 * 56.04431 * 10 9 8 36 36 H 1.08993 * 109.47737 * 60.00169 * 11 10 9 37 37 H 1.09000 * 109.47263 * 299.99731 * 11 10 9 38 38 H 1.09001 * 109.46832 * 60.00321 * 13 12 11 39 39 H 1.09002 * 109.47153 * 180.02562 * 13 12 11 40 40 H 1.08996 * 109.46952 * 300.00302 * 13 12 11 41 41 H 1.09000 * 109.47140 * 60.00051 * 14 12 11 42 42 H 1.09001 * 109.47230 * 179.97438 * 14 12 11 43 43 H 1.09001 * 109.47375 * 300.00034 * 14 12 11 44 44 H 1.09000 * 109.47486 * 299.99829 * 15 12 11 45 45 H 1.09001 * 109.47362 * 60.00551 * 15 12 11 46 46 H 0.97000 * 120.00540 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1940 1.1740 0.0000 4 6 3.5986 1.1582 -0.0005 5 6 4.2664 -0.0145 -0.0016 6 7 3.5895 -1.1996 -0.0016 7 6 4.0054 -2.5033 0.0030 8 6 2.8970 -3.2758 -0.0019 9 6 2.8758 -4.7826 -0.0021 10 7 2.7489 -5.2707 1.3777 11 6 2.7254 -6.7390 1.4166 12 6 2.5920 -7.2086 2.8667 13 6 3.7820 -6.6959 3.6803 14 6 1.2933 -6.6617 3.4625 15 6 2.5669 -8.7379 2.9071 16 6 2.4362 -9.2005 4.3354 17 1 2.3765 -8.4762 5.1343 18 6 2.3927 -10.5484 4.6223 19 7 2.4648 -11.4304 3.6494 20 14 2.2314 -11.1218 6.3928 21 1 0.9713 -10.5909 6.9722 22 1 2.2069 -12.6061 6.4321 23 1 3.3870 -10.6243 7.1815 24 7 1.8238 -2.4817 -0.0008 25 6 2.2188 -1.2163 -0.0005 26 1 -0.3634 -0.0012 1.0278 27 1 -0.3634 0.8906 -0.5127 28 1 -0.3634 -0.8893 -0.5147 29 1 1.6620 2.1139 0.0008 30 1 4.1466 2.0888 -0.0001 31 1 5.3464 -0.0152 -0.0016 32 1 5.0283 -2.8497 0.0071 33 1 3.8017 -5.1590 -0.4370 34 1 2.0285 -5.1339 -0.5910 35 1 1.9311 -4.8836 1.8244 36 1 3.6504 -7.1287 0.9918 37 1 1.8774 -7.1043 0.8373 38 1 3.7994 -5.6064 3.6514 39 1 3.6872 -7.0309 4.7132 40 1 4.7072 -7.0855 3.2558 41 1 0.4455 -7.0270 2.8828 42 1 1.1980 -6.9967 4.4954 43 1 1.3107 -5.5722 3.4335 44 1 1.7189 -9.1028 2.3276 45 1 3.4920 -9.1279 2.4826 46 1 2.4339 -12.3787 3.8511 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174413029.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:24 Heat of formation + Delta-G solvation = 69.976447 kcal Electronic energy + Delta-G solvation = -23765.944947 eV Core-core repulsion = 20463.034577 eV Total energy + Delta-G solvation = -3302.910370 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.185 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.94549 -38.09831 -37.35626 -34.83500 -34.20612 -32.21193 -31.02743 -29.59068 -27.40251 -27.03307 -26.28340 -26.19255 -24.28744 -22.97931 -22.32885 -21.90843 -20.51946 -17.92062 -17.62437 -17.12103 -16.19686 -16.13703 -15.84805 -15.20197 -14.70442 -14.47066 -14.23534 -14.12232 -13.92377 -13.50453 -13.13339 -12.89481 -12.68934 -12.52783 -12.19153 -11.97473 -11.94928 -11.82413 -11.80128 -11.57329 -10.91681 -10.81439 -10.80633 -10.74418 -10.42449 -10.22809 -10.15503 -10.06573 -9.61383 -9.02484 -8.84350 -8.75198 -8.26749 -8.00139 -7.94882 -5.91519 -3.91331 0.49599 1.09117 2.42135 2.69015 3.29093 3.38075 3.42380 3.44936 3.97104 4.16070 4.44222 4.51018 4.53377 4.69001 4.83088 5.05624 5.15867 5.17101 5.29441 5.40081 5.44151 5.58843 5.64649 5.70811 5.76102 5.79020 5.83700 5.89989 6.04974 6.06731 6.28328 6.33471 6.40988 6.51544 6.59466 6.73596 6.86668 6.89749 6.91745 7.27740 7.29164 7.32266 7.46383 7.72372 7.76369 7.81561 7.92136 8.09118 8.53889 9.13809 9.71043 11.20159 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.030566 B = 0.002453 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.825364 B =11410.691054 C =11560.416140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.041 4.041 3 C -0.118 4.118 4 C -0.142 4.142 5 C 0.050 3.950 6 N -0.362 5.362 7 C -0.078 4.078 8 C 0.071 3.929 9 C 0.137 3.863 10 N -0.682 5.682 11 C 0.070 3.930 12 C -0.057 4.057 13 C -0.115 4.115 14 C -0.129 4.129 15 C 0.034 3.966 16 C -0.506 4.506 17 H 0.058 0.942 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.888 3.112 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.278 1.278 24 N -0.483 5.483 25 C 0.220 3.780 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.139 0.861 30 H 0.148 0.852 31 H 0.161 0.839 32 H 0.183 0.817 33 H 0.085 0.915 34 H 0.044 0.956 35 H 0.344 0.656 36 H 0.067 0.933 37 H 0.025 0.975 38 H 0.041 0.959 39 H 0.053 0.947 40 H 0.039 0.961 41 H 0.040 0.960 42 H 0.063 0.937 43 H 0.033 0.967 44 H 0.013 0.987 45 H 0.015 0.985 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.050 26.613 -10.103 28.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.043 4.043 3 C -0.141 4.141 4 C -0.163 4.163 5 C -0.072 4.072 6 N -0.034 5.034 7 C -0.210 4.210 8 C -0.062 4.062 9 C 0.007 3.993 10 N -0.314 5.314 11 C -0.059 4.059 12 C -0.058 4.058 13 C -0.173 4.173 14 C -0.186 4.186 15 C -0.004 4.004 16 C -0.544 4.544 17 H 0.076 0.924 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.716 3.284 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.203 1.203 24 N -0.203 5.203 25 C -0.023 4.023 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.157 0.843 30 H 0.166 0.834 31 H 0.178 0.822 32 H 0.201 0.799 33 H 0.103 0.897 34 H 0.062 0.938 35 H 0.163 0.837 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.052 0.948 44 H 0.031 0.969 45 H 0.033 0.967 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.981 26.120 -10.019 28.045 hybrid contribution 0.087 -0.349 0.622 0.718 sum 2.068 25.771 -9.398 27.509 Atomic orbital electron populations 1.20668 0.89003 1.03442 1.03098 1.19035 0.96936 0.88440 0.99900 1.20890 0.93728 0.97773 1.01733 1.20741 0.94782 0.97073 1.03655 1.21578 0.98617 0.83370 1.03678 1.42792 1.08774 1.06080 1.45760 1.22472 1.01395 0.80132 1.16955 1.20831 0.87832 0.96313 1.01175 1.20202 1.01691 0.85755 0.91681 1.60618 1.47237 1.08992 1.14590 1.22130 0.99977 0.85307 0.98446 1.20617 0.94866 0.98801 0.91489 1.21592 0.96918 0.98704 1.00050 1.21768 0.97062 0.97707 1.02106 1.19125 0.96943 0.87275 0.97034 1.21209 1.49108 0.91270 0.92841 0.92376 1.25013 0.95777 0.97091 0.96734 1.69955 1.51283 1.01258 1.31314 0.86729 0.78583 0.77420 0.85683 1.20377 1.21471 1.20348 1.70610 1.29749 0.97814 1.22173 1.20724 0.80259 0.94317 1.07025 0.90475 0.91051 0.90313 0.84278 0.83394 0.82166 0.79946 0.89657 0.93778 0.83703 0.91449 0.95673 0.93973 0.92773 0.94193 0.94048 0.91795 0.94820 0.96860 0.96657 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.03 36.00 0.36 -0.50 16 2 C -0.04 -0.41 5.90 -104.40 -0.62 -1.03 16 3 C -0.12 -0.87 9.72 -39.53 -0.38 -1.25 16 4 C -0.14 -0.92 9.99 -39.91 -0.40 -1.31 16 5 C 0.05 0.39 10.95 -16.65 -0.18 0.21 16 6 N -0.36 -4.16 2.95 -62.66 -0.18 -4.35 16 7 C -0.08 -0.94 11.66 -16.43 -0.19 -1.13 16 8 C 0.07 1.00 6.57 -82.98 -0.55 0.45 16 9 C 0.14 1.89 6.22 -4.97 -0.03 1.86 16 10 N -0.68 -10.78 5.70 -115.05 -0.66 -11.44 16 11 C 0.07 1.25 4.65 -3.82 -0.02 1.23 16 12 C -0.06 -1.18 0.60 -154.51 -0.09 -1.27 16 13 C -0.12 -2.31 8.06 37.16 0.30 -2.01 16 14 C -0.13 -2.54 7.89 37.16 0.29 -2.24 16 15 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 16 C -0.51 -14.07 7.65 -34.44 -0.26 -14.33 16 17 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 18 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 20 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 N -0.48 -7.28 11.31 -9.01 -0.10 -7.39 16 25 C 0.22 2.88 7.52 -156.04 -1.17 1.71 16 26 H 0.08 0.61 8.14 -51.92 -0.42 0.18 16 27 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 28 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 29 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 30 H 0.15 0.47 8.06 -52.49 -0.42 0.04 16 31 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.18 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.34 5.68 6.76 -39.29 -0.27 5.41 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.04 0.77 7.60 -51.93 -0.39 0.38 16 39 H 0.05 1.15 6.62 -51.93 -0.34 0.81 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.06 1.35 6.62 -51.93 -0.34 1.00 16 43 H 0.03 0.58 6.57 -51.93 -0.34 0.24 16 44 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 370.85 15.07 5.59 5.59 Total: -1.00 -32.74 370.85 -10.25 -42.99 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -7.46 Total: 1.55 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -3.15 Total: -17.40 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: -0.21 Total: -49.61 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.74 -10.25 -42.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174413029.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.962 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds