Wall clock time and date at job start Tue Mar 31 2020 09:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47615 * 2 1 4 4 C 1.53012 * 109.46866 * 120.00058 * 2 1 3 5 5 C 1.52995 * 109.47034 * 65.81792 * 4 2 1 6 6 H 1.09003 * 109.49114 * 303.44488 * 5 4 2 7 7 O 1.42902 * 109.48472 * 63.47493 * 5 4 2 8 8 C 1.42902 * 114.09707 * 181.14117 * 7 5 4 9 9 C 1.53095 * 109.41438 * 298.83958 * 8 7 5 10 10 C 1.53172 * 109.16231 * 57.61085 * 9 8 7 11 11 C 1.53085 * 109.47747 * 183.42015 * 5 4 2 12 12 H 1.09000 * 109.57385 * 302.33942 * 11 5 4 13 13 N 1.46898 * 109.52788 * 62.49820 * 11 5 4 14 14 C 1.46900 * 111.00384 * 204.68646 * 13 11 5 15 15 C 1.53004 * 109.47208 * 180.02562 * 14 13 11 16 16 C 1.52996 * 109.47063 * 180.02562 * 15 14 13 17 17 S 1.80998 * 109.47233 * 180.02562 * 16 15 14 18 18 C 1.76192 * 100.00300 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99935 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00415 * 180.27230 * 18 17 16 21 21 N 1.31636 * 119.99481 * 359.72683 * 20 18 17 22 22 Si 1.86802 * 120.00531 * 179.72378 * 20 18 17 23 23 H 1.48498 * 109.46973 * 59.99609 * 22 20 18 24 24 H 1.48497 * 109.47314 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46692 * 300.00253 * 22 20 18 26 26 H 1.09002 * 109.47182 * 300.00494 * 1 2 3 27 27 H 1.09003 * 109.47218 * 59.99865 * 1 2 3 28 28 H 1.08999 * 109.47309 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47182 * 239.99506 * 2 1 3 30 30 H 1.09001 * 109.47526 * 180.40882 * 3 2 1 31 31 H 1.08999 * 109.47016 * 300.41173 * 3 2 1 32 32 H 1.09006 * 109.47276 * 60.40489 * 3 2 1 33 33 H 1.09002 * 109.46368 * 305.81303 * 4 2 1 34 34 H 1.08995 * 109.46471 * 185.81808 * 4 2 1 35 35 H 1.09004 * 109.47518 * 178.85762 * 8 7 5 36 36 H 1.08995 * 109.48962 * 58.83216 * 8 7 5 37 37 H 1.08997 * 109.52123 * 297.70607 * 9 8 7 38 38 H 1.09002 * 109.51840 * 177.51687 * 9 8 7 39 39 H 1.09002 * 109.54498 * 183.15200 * 10 9 8 40 40 H 1.09002 * 109.54432 * 62.88436 * 10 9 8 41 41 H 1.00899 * 111.00177 * 328.64278 * 13 11 5 42 42 H 1.08996 * 109.47082 * 60.00224 * 14 13 11 43 43 H 1.09003 * 109.46922 * 299.99670 * 14 13 11 44 44 H 1.08996 * 109.47051 * 60.00040 * 15 14 13 45 45 H 1.08994 * 109.46893 * 299.99863 * 15 14 13 46 46 H 1.09003 * 109.47414 * 59.99592 * 16 15 14 47 47 H 1.09008 * 109.46981 * 299.99829 * 16 15 14 48 48 H 0.97005 * 119.99152 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2494 5 6 1.6528 -2.1998 1.1783 6 1 0.5724 -2.2877 1.0631 7 8 2.3024 -2.8095 0.0610 8 6 1.9875 -4.1924 -0.1136 9 6 2.4360 -4.9765 1.1224 10 6 1.7511 -4.3946 2.3628 11 6 2.0877 -2.9038 2.4663 12 1 3.1621 -2.7817 2.6042 13 7 1.3763 -2.3181 3.6103 14 6 2.1324 -2.5103 4.8550 15 6 1.3612 -1.8891 6.0213 16 6 2.1491 -2.0887 7.3176 17 16 1.2365 -1.3545 8.6975 18 6 2.3389 -1.7200 10.0224 19 1 3.2587 -2.2519 9.8285 20 6 2.0224 -1.3299 11.3163 21 7 0.9011 -0.6821 11.5527 22 14 3.1875 -1.7242 12.7222 23 1 4.5043 -1.0869 12.4673 24 1 2.6231 -1.2042 13.9935 25 1 3.3610 -3.1956 12.8234 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4424 -0.0073 31 1 1.6707 1.9584 -0.8863 32 1 1.6827 1.9542 0.8936 33 1 1.5940 -0.2710 2.1362 34 1 3.1249 -0.6320 1.3029 35 1 2.5045 -4.5745 -0.9939 36 1 0.9116 -4.3065 -0.2459 37 1 3.5175 -4.8962 1.2321 38 1 2.1571 -6.0242 1.0101 39 1 2.1087 -4.9118 3.2532 40 1 0.6718 -4.5194 2.2757 41 1 1.1812 -1.3408 3.4530 42 1 3.1067 -2.0297 4.7661 43 1 2.2684 -3.5765 5.0366 44 1 0.3872 -2.3701 6.1100 45 1 1.2249 -0.8230 5.8400 46 1 3.1231 -1.6075 7.2286 47 1 2.2858 -3.1548 7.4991 48 1 0.6801 -0.4092 12.4569 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186338708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:41:45 Heat of formation + Delta-G solvation = -88.121227 kcal Electronic energy + Delta-G solvation = -22657.380572 eV Core-core repulsion = 19450.765772 eV Total energy + Delta-G solvation = -3206.614800 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.182 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.14762 -36.63922 -36.42121 -33.61305 -32.51373 -32.39270 -29.85753 -27.41138 -27.28452 -25.77479 -25.08591 -23.37696 -22.39880 -21.10879 -20.25353 -20.13590 -17.45278 -16.82269 -16.37955 -15.83686 -15.26957 -15.21339 -14.79834 -14.74678 -14.45385 -14.35393 -13.78895 -13.66824 -13.32913 -13.24977 -12.85713 -12.55192 -12.48219 -12.41308 -12.15530 -11.76957 -11.59499 -11.53687 -11.31442 -11.21963 -11.05044 -11.03539 -10.90657 -10.79955 -10.76315 -10.59830 -10.43219 -10.31519 -9.65592 -9.46127 -9.04225 -8.47895 -8.29292 -6.51521 -6.21686 -3.91845 3.21907 3.23726 3.28269 3.43248 3.58724 4.10072 4.23969 4.32038 4.50391 4.66103 4.69820 4.76182 4.82136 4.91039 4.98086 5.10304 5.14117 5.27170 5.29552 5.35189 5.38490 5.42543 5.45031 5.48315 5.52009 5.60154 5.64587 5.66588 5.71406 5.74522 5.77311 5.79566 5.86840 5.92064 5.97495 6.08329 6.11942 6.13447 6.20600 6.34207 6.60656 6.72832 6.88261 7.09379 7.33108 7.61180 8.37412 9.24428 10.86470 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.019899 B = 0.002523 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.753762 B =11094.036077 C =12012.635104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.149 4.149 4 C -0.112 4.112 5 C 0.090 3.910 6 H 0.070 0.930 7 O -0.376 6.376 8 C 0.061 3.939 9 C -0.156 4.156 10 C -0.112 4.112 11 C 0.059 3.941 12 H 0.050 0.950 13 N -0.683 5.683 14 C 0.064 3.936 15 C -0.095 4.095 16 C -0.112 4.112 17 S -0.132 6.132 18 C -0.517 4.517 19 H 0.071 0.929 20 C 0.071 3.929 21 N -0.870 5.870 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.341 0.659 42 H 0.028 0.972 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.469 -3.339 -25.783 26.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.150 4.150 5 C 0.032 3.968 6 H 0.088 0.912 7 O -0.294 6.294 8 C -0.016 4.016 9 C -0.195 4.195 10 C -0.150 4.150 11 C -0.052 4.052 12 H 0.068 0.932 13 N -0.317 5.317 14 C -0.066 4.066 15 C -0.134 4.134 16 C -0.261 4.261 17 S 0.096 5.904 18 C -0.665 4.665 19 H 0.089 0.911 20 C -0.138 4.138 21 N -0.506 5.506 22 Si 0.745 3.255 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.199 1.199 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.162 0.838 42 H 0.047 0.953 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.081 -3.144 -25.648 25.840 hybrid contribution 2.509 -0.504 1.100 2.785 sum 2.590 -3.647 -24.548 24.952 Atomic orbital electron populations 1.21906 0.95278 1.01742 1.01776 1.21037 0.95756 0.95857 0.98456 1.21855 1.00934 0.96020 1.01780 1.21766 1.01929 0.92584 0.98725 1.22258 0.96892 0.92439 0.85242 0.91202 1.87923 1.70593 1.23242 1.47648 1.22562 0.99759 0.81606 0.97655 1.22223 1.01494 1.00080 0.95662 1.21614 1.01233 0.94542 0.97589 1.22129 0.96877 0.95360 0.90786 0.93169 1.60511 1.47618 1.21869 1.01684 1.22070 0.94569 1.01106 0.88853 1.21243 0.99407 1.00891 0.91856 1.23221 1.01719 1.02905 0.98304 1.84620 1.31787 1.75082 0.98876 1.22653 1.07666 1.43052 0.93141 0.91056 1.25015 0.95812 0.94696 0.98275 1.70021 1.22476 1.36534 1.21528 0.86227 0.80337 0.78837 0.80146 1.19955 1.20804 1.19943 0.92500 0.92867 0.92630 0.90465 0.92782 0.92770 0.92596 0.90353 0.91189 0.89031 0.93186 0.91241 0.90750 0.91411 0.91023 0.83850 0.95341 0.91117 0.90711 0.91855 0.92363 0.92157 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.97 37.15 0.33 -0.83 16 2 C -0.09 -0.76 2.86 -90.62 -0.26 -1.02 16 3 C -0.15 -1.14 9.19 37.16 0.34 -0.79 16 4 C -0.11 -1.01 4.25 -26.73 -0.11 -1.12 16 5 C 0.09 0.86 2.14 -26.69 -0.06 0.80 16 6 H 0.07 0.68 6.44 -51.93 -0.33 0.35 16 7 O -0.38 -3.80 9.78 -35.23 -0.34 -4.15 16 8 C 0.06 0.49 6.84 37.21 0.25 0.74 16 9 C -0.16 -1.27 6.14 -26.59 -0.16 -1.43 16 10 C -0.11 -1.11 5.51 -26.55 -0.15 -1.25 16 11 C 0.06 0.62 2.14 -67.57 -0.14 0.48 16 12 H 0.05 0.58 7.80 -51.93 -0.41 0.18 16 13 N -0.68 -7.99 6.31 -106.58 -0.67 -8.66 16 14 C 0.06 0.87 5.49 -3.82 -0.02 0.85 16 15 C -0.10 -1.56 5.48 -26.73 -0.15 -1.70 16 16 C -0.11 -2.29 5.67 37.16 0.21 -2.08 16 17 S -0.13 -3.49 21.44 -107.50 -2.30 -5.79 16 18 C -0.52 -14.97 9.50 30.94 0.29 -14.68 16 19 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 20 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 21 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 22 Si 0.92 21.68 29.55 -169.99 -5.02 16.66 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.44 6.52 -51.93 -0.34 0.11 16 29 H 0.08 0.70 7.62 -51.93 -0.40 0.31 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.68 6.21 -51.93 -0.32 0.36 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.72 7.55 -51.93 -0.39 0.33 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.34 3.73 6.28 -39.29 -0.25 3.49 16 42 H 0.03 0.38 8.06 -51.93 -0.42 -0.04 16 43 H 0.07 0.97 7.51 -51.93 -0.39 0.58 16 44 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.06 1.18 8.14 -51.92 -0.42 0.75 16 47 H 0.06 1.22 8.14 -51.91 -0.42 0.80 16 48 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 383.54 15.07 5.78 5.78 Total: -1.00 -30.77 383.54 -10.67 -41.44 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -9.13 Total: 0.29 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: 0.29 Total: -20.11 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.06 Total: -34.12 kcal Atomic # 8 Polarization: -3.80 SS G_CDS: -0.34 Total: -4.15 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -2.30 Total: -5.79 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.77 -10.67 -41.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186338708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.681 kcal (2) G-P(sol) polarization free energy of solvation -30.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds