Wall clock time and date at job start Tue Mar 31 2020 10:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47793 * 2 1 4 4 O 1.42903 * 109.47031 * 239.99551 * 2 1 3 5 5 C 1.53005 * 109.47038 * 120.00293 * 2 1 3 6 6 C 1.52995 * 109.47261 * 186.37763 * 5 2 1 7 7 H 1.09007 * 108.89786 * 55.45230 * 6 5 2 8 8 C 1.54072 * 108.97697 * 296.69372 * 6 5 2 9 9 C 1.54295 * 112.28674 * 198.27091 * 8 6 5 10 10 C 1.50461 * 113.03203 * 318.29992 * 9 8 6 11 11 C 1.54513 * 108.85447 * 92.15862 * 10 9 8 12 12 C 1.45863 * 111.58440 * 282.80368 * 11 10 9 13 13 N 1.44269 * 108.98387 * 174.21894 * 6 5 2 14 14 C 1.46901 * 110.99433 * 339.95551 * 13 6 5 15 15 C 1.53006 * 109.46938 * 172.70374 * 14 13 6 16 16 C 1.53002 * 109.47037 * 176.15605 * 15 14 13 17 17 S 1.81003 * 109.47020 * 179.97438 * 16 15 14 18 18 C 1.76195 * 100.00136 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00138 * 359.97438 * 18 17 16 20 20 C 1.38794 * 120.00109 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99928 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00074 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47398 * 90.00154 * 22 20 18 24 24 H 1.48504 * 109.47406 * 210.00405 * 22 20 18 25 25 H 1.48500 * 109.47075 * 330.00131 * 22 20 18 26 26 H 1.09002 * 109.47171 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47394 * 300.00331 * 1 2 3 28 28 H 1.08995 * 109.46931 * 60.00083 * 1 2 3 29 29 H 0.96691 * 113.99730 * 60.00688 * 4 2 1 30 30 H 1.08992 * 109.47546 * 66.37012 * 5 2 1 31 31 H 1.09009 * 109.46712 * 306.37501 * 5 2 1 32 32 H 1.08998 * 108.92033 * 77.54684 * 8 6 5 33 33 H 1.09002 * 108.91695 * 318.98960 * 8 6 5 34 34 H 1.09001 * 108.77093 * 197.38733 * 9 8 6 35 35 H 1.09001 * 108.67870 * 79.15348 * 9 8 6 36 36 H 1.08993 * 109.57747 * 332.34414 * 10 9 8 37 37 H 1.09007 * 109.67482 * 212.02882 * 10 9 8 38 38 H 1.09000 * 109.05535 * 162.26055 * 11 10 9 39 39 H 1.08998 * 108.99860 * 43.30536 * 11 10 9 40 40 H 1.08996 * 108.80049 * 300.43670 * 12 11 10 41 41 H 1.09008 * 108.70283 * 182.14771 * 12 11 10 42 42 H 1.08998 * 109.47028 * 292.70180 * 14 13 6 43 43 H 1.08992 * 109.47717 * 52.70619 * 14 13 6 44 44 H 1.09001 * 109.46755 * 296.15772 * 15 14 13 45 45 H 1.09002 * 109.47040 * 56.15883 * 15 14 13 46 46 H 1.08994 * 109.47106 * 299.99667 * 16 15 14 47 47 H 1.09002 * 109.46979 * 60.00241 * 16 15 14 48 48 H 0.97008 * 119.99983 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2493 6 6 3.5615 -0.5841 1.3320 7 1 3.8225 0.4739 1.3052 8 6 4.1949 -1.2873 0.1162 9 6 5.6913 -1.5950 0.3322 10 6 6.4342 -0.4677 0.9965 11 6 6.4209 -0.6933 2.5250 12 6 5.1326 -0.3367 3.1089 13 7 4.0164 -1.1480 2.5795 14 6 2.9181 -1.2302 3.5516 15 6 3.3893 -1.9950 4.7902 16 6 2.2776 -1.9980 5.8413 17 16 2.8348 -2.9033 7.3063 18 6 1.4026 -2.7538 8.3215 19 1 0.5373 -2.2186 7.9593 20 6 1.3867 -3.3229 9.5873 21 7 0.3169 -3.2107 10.3460 22 14 2.8835 -4.2479 10.2143 23 1 3.7879 -3.3055 10.9209 24 1 2.4494 -5.3144 11.1522 25 1 3.6033 -4.8595 9.0684 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.7210 -0.2702 -1.9978 30 1 1.7728 -1.7766 1.1941 31 1 1.5864 -0.2776 2.1356 32 1 4.0887 -0.6454 -0.7583 33 1 3.6648 -2.2220 -0.0672 34 1 6.1513 -1.7960 -0.6354 35 1 5.7783 -2.4865 0.9532 36 1 5.9467 0.4787 0.7628 37 1 7.4639 -0.4460 0.6395 38 1 7.1999 -0.0827 2.9816 39 1 6.6261 -1.7439 2.7304 40 1 4.9319 0.7144 2.9015 41 1 5.1874 -0.4768 4.1885 42 1 2.6122 -0.2246 3.8400 43 1 2.0733 -1.7520 3.1021 44 1 3.6306 -3.0213 4.5135 45 1 4.2758 -1.5112 5.2003 46 1 2.0364 -0.9717 6.1180 47 1 1.3911 -2.4817 5.4311 48 1 0.3056 -3.6088 11.2305 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336791005.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:14 Heat of formation + Delta-G solvation = -67.095641 kcal Electronic energy + Delta-G solvation = -23368.246061 eV Core-core repulsion = 20162.542999 eV Total energy + Delta-G solvation = -3205.703062 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.182 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.12449 -37.65111 -35.42758 -33.67994 -32.42540 -32.14434 -31.39431 -27.92733 -26.98796 -25.71693 -24.72997 -23.26015 -21.85397 -21.00835 -20.20905 -19.17682 -17.55532 -17.44370 -16.32394 -15.93654 -15.21205 -15.02384 -14.96523 -14.49794 -14.33600 -14.09017 -14.01973 -13.67357 -13.10061 -12.81472 -12.75607 -12.61454 -12.57600 -12.36362 -12.13839 -11.80899 -11.52450 -11.46525 -11.27397 -11.03467 -10.93652 -10.81129 -10.76043 -10.52092 -10.39214 -10.37501 -10.16832 -10.03007 -9.94815 -9.72020 -8.98879 -8.53239 -8.22103 -6.91685 -6.26942 -3.98703 3.03083 3.31418 3.47566 3.57710 3.83971 4.03870 4.33446 4.46509 4.63365 4.73074 4.80670 4.84312 4.95611 5.00232 5.10476 5.12372 5.19157 5.21914 5.26192 5.31640 5.43580 5.44966 5.52337 5.58209 5.66373 5.72862 5.76532 5.77955 5.79533 5.85310 5.95213 5.96221 6.00108 6.14350 6.20717 6.21022 6.27939 6.31859 6.44334 6.47773 6.56418 6.69779 7.14272 7.27048 7.39526 7.96890 8.45514 9.19253 10.82606 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.017879 B = 0.003240 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.697298 B = 8639.136508 C = 9888.787578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.103 3.897 3 H 0.050 0.950 4 O -0.558 6.558 5 C -0.129 4.129 6 C 0.092 3.908 7 H 0.040 0.960 8 C -0.090 4.090 9 C -0.114 4.114 10 C -0.114 4.114 11 C -0.115 4.115 12 C 0.049 3.951 13 N -0.522 5.522 14 C 0.053 3.947 15 C -0.099 4.099 16 C -0.081 4.081 17 S -0.215 6.215 18 C -0.502 4.502 19 H 0.087 0.913 20 C 0.091 3.909 21 N -0.883 5.883 22 Si 0.862 3.138 23 H -0.269 1.269 24 H -0.276 1.276 25 H -0.237 1.237 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.370 0.630 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.031 0.969 41 H 0.076 0.924 42 H 0.032 0.968 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.227 8.290 -23.813 26.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.043 3.957 3 H 0.068 0.932 4 O -0.363 6.363 5 C -0.167 4.167 6 C -0.017 4.017 7 H 0.058 0.942 8 C -0.128 4.128 9 C -0.151 4.151 10 C -0.152 4.152 11 C -0.153 4.153 12 C -0.078 4.078 13 N -0.246 5.246 14 C -0.076 4.076 15 C -0.138 4.138 16 C -0.230 4.230 17 S 0.012 5.988 18 C -0.649 4.649 19 H 0.105 0.895 20 C -0.117 4.117 21 N -0.520 5.520 22 Si 0.687 3.313 23 H -0.194 1.194 24 H -0.201 1.201 25 H -0.161 1.161 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.216 0.784 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.049 0.951 41 H 0.095 0.905 42 H 0.050 0.950 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.558 6.849 -23.041 25.515 hybrid contribution -1.418 1.467 0.122 2.044 sum 7.140 8.317 -22.919 25.405 Atomic orbital electron populations 1.22513 0.96540 1.03015 1.02342 1.21789 0.92544 0.95039 0.86283 0.93157 1.86694 1.76317 1.57643 1.15656 1.22290 0.96057 1.02365 0.95940 1.21459 0.92997 0.96434 0.90807 0.94200 1.21938 0.94085 1.00924 0.95848 1.21265 0.95370 0.98978 0.99520 1.21333 0.99552 0.98933 0.95341 1.20607 0.96538 1.02624 0.95543 1.21096 0.91934 0.94498 1.00283 1.61700 1.08519 1.51340 1.03075 1.22393 0.93849 0.98806 0.92509 1.21404 0.97815 1.01535 0.92999 1.23016 1.00383 1.02295 0.97343 1.84166 1.27643 1.72213 1.14740 1.22132 0.99532 1.41147 1.02107 0.89491 1.24795 0.96339 0.95033 0.95508 1.69942 1.28063 1.43902 1.10090 0.86669 0.83239 0.80604 0.80835 1.19415 1.20129 1.16110 0.91619 0.91579 0.92533 0.78376 0.90054 0.89888 0.91394 0.91953 0.93476 0.91679 0.92627 0.92562 0.92040 0.91098 0.95105 0.90547 0.94979 0.89878 0.90754 0.91521 0.91753 0.91458 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.35 9.53 37.16 0.35 -1.00 16 2 C 0.10 0.83 3.52 -26.73 -0.09 0.73 16 3 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 4 O -0.56 -4.47 10.11 -35.23 -0.36 -4.83 16 5 C -0.13 -1.28 3.10 -26.73 -0.08 -1.36 16 6 C 0.09 0.98 1.86 -68.56 -0.13 0.85 16 7 H 0.04 0.43 6.51 -51.93 -0.34 0.09 16 8 C -0.09 -0.94 4.14 -25.49 -0.11 -1.05 16 9 C -0.11 -1.16 5.42 -27.32 -0.15 -1.31 16 10 C -0.11 -1.08 5.60 -27.20 -0.15 -1.23 16 11 C -0.12 -1.18 5.53 -29.31 -0.16 -1.34 16 12 C 0.05 0.56 4.79 -6.71 -0.03 0.53 16 13 N -0.52 -6.26 4.23 -231.43 -0.98 -7.24 16 14 C 0.05 0.69 3.59 -3.82 -0.01 0.68 16 15 C -0.10 -1.55 5.25 -26.73 -0.14 -1.70 16 16 C -0.08 -1.59 5.67 37.16 0.21 -1.38 16 17 S -0.22 -5.32 19.41 -107.50 -2.09 -7.40 16 18 C -0.50 -14.69 10.04 30.94 0.31 -14.38 16 19 H 0.09 2.71 8.03 -52.49 -0.42 2.28 16 20 C 0.09 2.69 5.50 -17.43 -0.10 2.60 16 21 N -0.88 -27.00 13.97 55.49 0.78 -26.22 16 22 Si 0.86 21.77 27.74 -169.99 -4.71 17.05 16 23 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.24 -5.88 6.74 56.52 0.38 -5.50 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.37 1.56 9.08 45.56 0.41 1.97 16 30 H 0.08 0.91 7.52 -51.93 -0.39 0.52 16 31 H 0.08 0.82 6.06 -51.92 -0.31 0.51 16 32 H 0.07 0.68 6.57 -51.93 -0.34 0.34 16 33 H 0.06 0.74 7.76 -51.93 -0.40 0.34 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.75 7.38 -51.93 -0.38 0.37 16 36 H 0.05 0.53 7.15 -51.93 -0.37 0.16 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.79 7.58 -51.93 -0.39 0.40 16 40 H 0.03 0.34 7.24 -51.93 -0.38 -0.04 16 41 H 0.08 0.94 5.69 -51.92 -0.30 0.64 16 42 H 0.03 0.41 7.69 -51.93 -0.40 0.01 16 43 H 0.08 1.06 5.80 -51.93 -0.30 0.75 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.07 1.05 6.07 -51.93 -0.32 0.74 16 46 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 47 H 0.07 1.31 8.14 -51.91 -0.42 0.89 16 48 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 365.81 15.07 5.51 5.51 Total: -1.00 -31.30 365.81 -10.14 -41.44 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -8.01 Total: 1.04 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -0.28 Total: -19.35 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: -0.20 Total: -33.46 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -0.36 Total: -4.83 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.05 kcal Atomic # 16 Polarization: -5.32 SS G_CDS: -2.09 Total: -7.40 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.30 -10.14 -41.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336791005.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.654 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds