Wall clock time and date at job start Tue Mar 31 2020 10:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47793 * 2 1 4 4 O 1.42903 * 109.47031 * 239.99551 * 2 1 3 5 5 C 1.53005 * 109.47038 * 120.00293 * 2 1 3 6 6 C 1.52995 * 109.47261 * 186.37763 * 5 2 1 7 7 H 1.09007 * 108.89786 * 55.45230 * 6 5 2 8 8 C 1.54072 * 108.97697 * 296.69372 * 6 5 2 9 9 C 1.54295 * 112.28674 * 198.27091 * 8 6 5 10 10 C 1.50461 * 113.03203 * 318.29992 * 9 8 6 11 11 C 1.54513 * 108.85447 * 92.15862 * 10 9 8 12 12 C 1.45863 * 111.58440 * 282.80368 * 11 10 9 13 13 N 1.44269 * 108.98387 * 174.21894 * 6 5 2 14 14 C 1.46901 * 110.99433 * 339.95551 * 13 6 5 15 15 C 1.53006 * 109.46938 * 172.70374 * 14 13 6 16 16 C 1.53002 * 109.47037 * 176.15605 * 15 14 13 17 17 S 1.81003 * 109.47020 * 179.97438 * 16 15 14 18 18 C 1.76195 * 100.00136 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00138 * 359.97438 * 18 17 16 20 20 C 1.38794 * 120.00109 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99928 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00074 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47398 * 90.00154 * 22 20 18 24 24 H 1.48504 * 109.47406 * 210.00405 * 22 20 18 25 25 H 1.48500 * 109.47075 * 330.00131 * 22 20 18 26 26 H 1.09002 * 109.47171 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47394 * 300.00331 * 1 2 3 28 28 H 1.08995 * 109.46931 * 60.00083 * 1 2 3 29 29 H 0.96691 * 113.99730 * 60.00688 * 4 2 1 30 30 H 1.08992 * 109.47546 * 66.37012 * 5 2 1 31 31 H 1.09009 * 109.46712 * 306.37501 * 5 2 1 32 32 H 1.08998 * 108.92033 * 77.54684 * 8 6 5 33 33 H 1.09002 * 108.91695 * 318.98960 * 8 6 5 34 34 H 1.09001 * 108.77093 * 197.38733 * 9 8 6 35 35 H 1.09001 * 108.67870 * 79.15348 * 9 8 6 36 36 H 1.08993 * 109.57747 * 332.34414 * 10 9 8 37 37 H 1.09007 * 109.67482 * 212.02882 * 10 9 8 38 38 H 1.09000 * 109.05535 * 162.26055 * 11 10 9 39 39 H 1.08998 * 108.99860 * 43.30536 * 11 10 9 40 40 H 1.08996 * 108.80049 * 300.43670 * 12 11 10 41 41 H 1.09008 * 108.70283 * 182.14771 * 12 11 10 42 42 H 1.08998 * 109.47028 * 292.70180 * 14 13 6 43 43 H 1.08992 * 109.47717 * 52.70619 * 14 13 6 44 44 H 1.09001 * 109.46755 * 296.15772 * 15 14 13 45 45 H 1.09002 * 109.47040 * 56.15883 * 15 14 13 46 46 H 1.08994 * 109.47106 * 299.99667 * 16 15 14 47 47 H 1.09002 * 109.46979 * 60.00241 * 16 15 14 48 48 H 0.97008 * 119.99983 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2493 6 6 3.5615 -0.5841 1.3320 7 1 3.8225 0.4739 1.3052 8 6 4.1949 -1.2873 0.1162 9 6 5.6913 -1.5950 0.3322 10 6 6.4342 -0.4677 0.9965 11 6 6.4209 -0.6933 2.5250 12 6 5.1326 -0.3367 3.1089 13 7 4.0164 -1.1480 2.5795 14 6 2.9181 -1.2302 3.5516 15 6 3.3893 -1.9950 4.7902 16 6 2.2776 -1.9980 5.8413 17 16 2.8348 -2.9033 7.3063 18 6 1.4026 -2.7538 8.3215 19 1 0.5373 -2.2186 7.9593 20 6 1.3867 -3.3229 9.5873 21 7 0.3169 -3.2107 10.3460 22 14 2.8835 -4.2479 10.2143 23 1 3.7879 -3.3055 10.9209 24 1 2.4494 -5.3144 11.1522 25 1 3.6033 -4.8595 9.0684 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.7210 -0.2702 -1.9978 30 1 1.7728 -1.7766 1.1941 31 1 1.5864 -0.2776 2.1356 32 1 4.0887 -0.6454 -0.7583 33 1 3.6648 -2.2220 -0.0672 34 1 6.1513 -1.7960 -0.6354 35 1 5.7783 -2.4865 0.9532 36 1 5.9467 0.4787 0.7628 37 1 7.4639 -0.4460 0.6395 38 1 7.1999 -0.0827 2.9816 39 1 6.6261 -1.7439 2.7304 40 1 4.9319 0.7144 2.9015 41 1 5.1874 -0.4768 4.1885 42 1 2.6122 -0.2246 3.8400 43 1 2.0733 -1.7520 3.1021 44 1 3.6306 -3.0213 4.5135 45 1 4.2758 -1.5112 5.2003 46 1 2.0364 -0.9717 6.1180 47 1 1.3911 -2.4817 5.4311 48 1 0.3056 -3.6088 11.2305 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336791005.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:14 Heat of formation + Delta-G solvation = -87.177537 kcal Electronic energy + Delta-G solvation = -23369.116877 eV Core-core repulsion = 20162.542999 eV Total energy + Delta-G solvation = -3206.573878 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.182 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.99967 -38.31494 -36.41971 -34.69536 -34.56489 -33.26720 -32.07610 -28.82340 -28.05246 -27.78911 -25.86580 -24.06268 -22.89788 -21.86686 -21.17731 -20.02918 -19.59663 -18.17611 -17.29173 -17.09597 -16.88145 -16.18317 -16.07204 -15.89472 -15.23221 -15.04807 -14.95069 -14.86915 -14.53481 -14.15606 -13.68971 -13.64158 -13.43857 -13.37119 -13.27327 -13.11221 -13.00011 -12.77250 -12.51302 -12.32510 -12.13688 -12.02546 -11.73414 -11.63156 -11.54628 -11.33702 -11.22360 -11.21406 -11.16577 -10.90902 -10.68958 -10.55075 -9.16213 -8.99175 -8.52486 -6.23525 1.12395 1.31406 1.47845 1.74426 2.24618 2.68525 2.85660 2.90836 3.44301 3.68844 3.79675 3.98882 4.00283 4.06254 4.18496 4.24193 4.29858 4.34965 4.40528 4.41026 4.41232 4.47176 4.63713 4.64321 4.70378 4.80200 4.83509 4.88677 4.90437 4.96169 5.03486 5.09785 5.12638 5.21696 5.30141 5.31078 5.33847 5.39481 5.43597 5.48580 5.60370 5.67105 5.69269 6.09341 6.18688 6.34841 6.91843 6.98877 8.60683 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.017879 B = 0.003240 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.697298 B = 8639.136508 C = 9888.787578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.108 3.892 3 H 0.061 0.939 4 O -0.572 6.572 5 C -0.129 4.129 6 C 0.094 3.906 7 H 0.045 0.955 8 C -0.082 4.082 9 C -0.112 4.112 10 C -0.109 4.109 11 C -0.114 4.114 12 C 0.049 3.951 13 N -0.530 5.530 14 C 0.064 3.936 15 C -0.086 4.086 16 C -0.068 4.068 17 S -0.221 6.221 18 C -0.522 4.522 19 H 0.050 0.950 20 C 0.038 3.962 21 N -0.923 5.923 22 Si 0.925 3.075 23 H -0.261 1.261 24 H -0.263 1.263 25 H -0.230 1.230 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.387 0.613 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.044 0.956 34 H 0.055 0.945 35 H 0.047 0.953 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.038 0.962 41 H 0.066 0.934 42 H 0.038 0.962 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.843 8.906 -25.281 28.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.048 3.952 3 H 0.079 0.921 4 O -0.380 6.380 5 C -0.166 4.166 6 C -0.014 4.014 7 H 0.063 0.937 8 C -0.120 4.120 9 C -0.150 4.150 10 C -0.147 4.147 11 C -0.152 4.152 12 C -0.078 4.078 13 N -0.254 5.254 14 C -0.066 4.066 15 C -0.125 4.125 16 C -0.217 4.217 17 S 0.007 5.993 18 C -0.669 4.669 19 H 0.068 0.932 20 C -0.166 4.166 21 N -0.561 5.561 22 Si 0.746 3.254 23 H -0.185 1.185 24 H -0.187 1.187 25 H -0.153 1.153 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.236 0.764 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.084 0.916 42 H 0.056 0.944 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.167 7.475 -24.531 27.587 hybrid contribution -1.982 1.338 0.466 2.437 sum 8.185 8.813 -24.066 26.904 Atomic orbital electron populations 1.22480 0.96021 1.02459 1.03142 1.21692 0.92850 0.95024 0.85593 0.92126 1.86644 1.76575 1.58221 1.16533 1.22249 0.95632 1.01582 0.97179 1.21470 0.93446 0.96488 0.90043 0.93716 1.21862 0.94038 1.00127 0.96007 1.21254 0.95369 0.98615 0.99754 1.21298 1.00219 0.98596 0.94544 1.20595 0.96247 1.02088 0.96278 1.21135 0.92196 0.94800 0.99704 1.61677 1.08335 1.52127 1.03302 1.22221 0.94213 0.98590 0.91529 1.21282 0.96447 1.01736 0.92988 1.23065 1.01614 1.01238 0.95736 1.83879 1.25565 1.73553 1.16341 1.22342 1.00406 1.40794 1.03399 0.93164 1.25769 0.99425 0.95822 0.95630 1.70039 1.30236 1.45005 1.10809 0.85716 0.79436 0.79632 0.80588 1.18548 1.18704 1.15338 0.92821 0.91707 0.90838 0.76363 0.91732 0.90040 0.90601 0.93719 0.92595 0.93398 0.92258 0.91310 0.90732 0.92316 0.94398 0.91590 0.94429 0.89653 0.91404 0.91224 0.91702 0.91648 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 9.53 71.98 0.69 -1.71 16 2 C 0.11 1.55 3.52 30.60 0.11 1.66 16 3 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 4 O -0.57 -8.15 10.11 -148.98 -1.51 -9.65 16 5 C -0.13 -2.42 3.10 30.59 0.09 -2.32 16 6 C 0.09 1.86 1.86 45.77 0.09 1.95 16 7 H 0.04 0.86 6.51 -2.38 -0.02 0.85 16 8 C -0.08 -1.61 4.14 31.40 0.13 -1.48 16 9 C -0.11 -2.11 5.42 30.21 0.16 -1.95 16 10 C -0.11 -1.82 5.60 30.29 0.17 -1.65 16 11 C -0.11 -2.14 5.53 28.92 0.16 -1.98 16 12 C 0.05 1.03 4.79 83.94 0.40 1.43 16 13 N -0.53 -12.06 4.23 -886.11 -3.75 -15.81 16 14 C 0.06 1.58 3.59 86.30 0.31 1.89 16 15 C -0.09 -2.62 5.25 30.60 0.16 -2.46 16 16 C -0.07 -2.61 5.67 71.98 0.41 -2.20 16 17 S -0.22 -10.85 19.41 -56.49 -1.10 -11.95 16 18 C -0.52 -31.20 10.04 67.95 0.68 -30.52 16 19 H 0.05 3.26 8.03 -2.91 -0.02 3.23 16 20 C 0.04 2.27 5.50 84.86 0.47 2.74 16 21 N -0.92 -57.34 13.97 21.65 0.30 -57.04 16 22 Si 0.93 44.70 27.74 68.60 1.90 46.60 16 23 H -0.26 -12.19 7.11 99.48 0.71 -11.49 16 24 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.23 -10.76 6.74 99.48 0.67 -10.09 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.39 2.40 9.08 -74.06 -0.67 1.73 16 30 H 0.06 1.43 7.52 -2.39 -0.02 1.41 16 31 H 0.08 1.53 6.06 -2.38 -0.01 1.51 16 32 H 0.08 1.37 6.57 -2.39 -0.02 1.36 16 33 H 0.04 1.03 7.76 -2.39 -0.02 1.01 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.05 1.07 7.38 -2.39 -0.02 1.05 16 36 H 0.06 0.97 7.15 -2.39 -0.02 0.95 16 37 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.06 1.25 7.58 -2.39 -0.02 1.23 16 40 H 0.04 0.75 7.24 -2.39 -0.02 0.73 16 41 H 0.07 1.52 5.69 -2.38 -0.01 1.51 16 42 H 0.04 0.91 7.69 -2.39 -0.02 0.89 16 43 H 0.09 2.10 5.80 -2.39 -0.01 2.09 16 44 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.07 2.11 6.07 -2.39 -0.01 2.10 16 46 H 0.06 2.51 8.14 -2.40 -0.02 2.49 16 47 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 48 H 0.28 15.82 8.31 -92.70 -0.77 15.05 16 Total: -1.00 -67.34 365.81 0.09 -67.25 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.21 Total: 17.20 kcal Atomic # 6 Polarization: -40.62 SS G_CDS: 4.03 Total: -36.60 kcal Atomic # 7 Polarization: -69.40 SS G_CDS: -3.45 Total: -72.85 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -1.51 Total: -9.65 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.90 Total: 46.60 kcal Atomic # 16 Polarization: -10.85 SS G_CDS: -1.10 Total: -11.95 kcal Total: -67.34 0.09 -67.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336791005.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.930 kcal (2) G-P(sol) polarization free energy of solvation -67.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds