Wall clock time and date at job start Tue Mar 31 2020 07:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.46730 * 2 1 4 4 C 1.37101 * 119.99585 * 264.51230 * 3 2 1 5 5 H 1.08000 * 119.99866 * 146.30143 * 4 3 2 6 6 C 1.38950 * 119.99992 * 326.29600 * 4 3 2 7 7 N 1.31412 * 119.99605 * 159.60027 * 6 4 3 8 8 Si 1.86793 * 120.00459 * 339.59902 * 6 4 3 9 9 H 1.48500 * 109.47106 * 95.27342 * 8 6 4 10 10 H 1.48493 * 109.47334 * 215.27670 * 8 6 4 11 11 H 1.48507 * 109.47079 * 335.27654 * 8 6 4 12 12 C 1.34777 * 120.00237 * 84.51654 * 3 2 1 13 13 O 1.21287 * 119.99980 * 179.97438 * 12 3 2 14 14 C 1.50699 * 119.99722 * 359.97438 * 12 3 2 15 15 C 1.53001 * 109.46650 * 174.14771 * 14 12 3 16 16 H 1.08998 * 110.35082 * 53.83730 * 15 14 12 17 17 C 1.54349 * 110.30451 * 291.70626 * 15 14 12 18 18 C 1.54338 * 102.57570 * 214.82169 * 17 15 14 19 19 H 1.08998 * 110.30422 * 267.32900 * 18 17 15 20 20 C 1.53007 * 110.30059 * 145.28153 * 18 17 15 21 21 C 1.51364 * 105.17865 * 26.25769 * 18 17 15 22 22 C 1.38265 * 109.74893 * 342.81114 * 21 18 17 23 23 C 1.38452 * 119.85010 * 180.02562 * 22 21 18 24 24 C 1.38139 * 120.21649 * 359.97438 * 23 22 21 25 25 C 1.38216 * 119.93653 * 0.02562 * 24 23 22 26 26 C 1.38143 * 119.93077 * 359.97438 * 25 24 23 27 27 C 1.50698 * 119.89052 * 179.97438 * 26 25 24 28 28 H 1.08999 * 109.47147 * 60.00328 * 1 2 3 29 29 H 1.09002 * 109.46808 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47068 * 299.99980 * 1 2 3 31 31 H 1.08992 * 109.47228 * 239.99983 * 2 1 3 32 32 H 1.08999 * 109.47147 * 119.99671 * 2 1 3 33 33 H 0.96998 * 119.99847 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47490 * 54.15047 * 14 12 3 35 35 H 1.09000 * 109.47196 * 294.14401 * 14 12 3 36 36 H 1.09004 * 110.81623 * 96.49431 * 17 15 14 37 37 H 1.08998 * 110.81648 * 333.14894 * 17 15 14 38 38 H 1.09001 * 109.47111 * 44.77521 * 20 18 17 39 39 H 1.09002 * 109.46943 * 164.78013 * 20 18 17 40 40 H 1.08996 * 109.46889 * 284.77687 * 20 18 17 41 41 H 1.08008 * 119.89077 * 179.97438 * 23 22 21 42 42 H 1.08002 * 120.03478 * 180.02562 * 24 23 22 43 43 H 1.07997 * 120.03318 * 180.02562 * 25 24 23 44 44 H 1.08998 * 109.47688 * 262.55231 * 27 26 25 45 45 H 1.08999 * 109.47406 * 22.55335 * 27 26 25 46 46 H 1.09005 * 109.47302 * 142.54972 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3538 1.9897 -1.1819 5 1 2.1884 3.0493 -1.3098 6 6 2.9066 1.2431 -2.2152 7 7 2.8611 1.6938 -3.4488 8 14 3.7147 -0.4012 -1.8509 9 1 2.7333 -1.4941 -2.0690 10 1 4.8774 -0.5923 -2.7545 11 1 4.1756 -0.4243 -0.4394 12 6 2.1377 2.0539 1.1618 13 8 2.5424 3.1973 1.1618 14 6 1.7685 1.3852 2.4609 15 6 2.1314 2.3046 3.6288 16 1 1.6789 3.2868 3.4927 17 6 3.6645 2.4336 3.7525 18 6 3.8709 2.5378 5.2784 19 1 3.8878 3.5830 5.5873 20 6 5.1718 1.8435 5.6868 21 6 2.6809 1.8289 5.8887 22 6 1.6808 1.6964 4.9432 23 6 0.4909 1.0746 5.2813 24 6 0.3004 0.5861 6.5594 25 6 1.3001 0.7185 7.5045 26 6 2.4881 1.3387 7.1690 27 6 3.5773 1.4831 8.2004 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.2467 1.1725 -4.1701 34 1 2.3143 0.4464 2.5544 35 1 0.6970 1.1855 2.4751 36 1 4.0192 3.3342 3.2510 37 1 4.1611 1.5490 3.3538 38 1 5.9663 2.1249 4.9956 39 1 5.4445 2.1481 6.6972 40 1 5.0314 0.7630 5.6584 41 1 -0.2910 0.9710 4.5434 42 1 -0.6289 0.1012 6.8198 43 1 1.1530 0.3369 8.5040 44 1 3.5283 2.4776 8.6439 45 1 3.4431 0.7315 8.9783 46 1 4.5484 1.3447 7.7252 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489917791.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:24 Heat of formation + Delta-G solvation = -9.967445 kcal Electronic energy + Delta-G solvation = -25172.455419 eV Core-core repulsion = 21833.785670 eV Total energy + Delta-G solvation = -3338.669749 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.54158 -38.76863 -36.21497 -35.11852 -33.88646 -32.28691 -30.91213 -29.73004 -29.47607 -27.79174 -26.59184 -24.75068 -23.26304 -22.89147 -21.90434 -20.44014 -19.71171 -18.44025 -16.89779 -16.57465 -15.95191 -15.64758 -15.37415 -14.91086 -14.72607 -14.44060 -13.78514 -13.76681 -13.35223 -13.31414 -13.10657 -12.93269 -12.54607 -12.41544 -12.31964 -12.23445 -12.06506 -11.94272 -11.61741 -11.58728 -11.36378 -11.10337 -11.02351 -10.72098 -10.68103 -10.63532 -10.38933 -10.16495 -10.06010 -9.73065 -9.07884 -8.57810 -8.49135 -8.32855 -7.76811 -6.36471 -3.90950 1.41149 1.43253 3.02178 3.21694 3.24589 3.76163 3.78424 4.14601 4.40100 4.51756 4.64959 4.89056 4.94719 5.02613 5.05560 5.14270 5.25703 5.35847 5.42697 5.47858 5.48411 5.52560 5.54410 5.60013 5.67796 5.75724 5.80498 5.88554 5.91490 5.93453 6.01071 6.07564 6.10042 6.16142 6.26200 6.30244 6.35541 6.39778 6.47714 6.54157 6.58649 6.68714 6.74786 6.80347 7.07248 7.57233 8.30337 8.54669 9.00087 9.36524 9.82178 10.76008 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.021066 B = 0.004132 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.858920 B = 6775.187199 C = 7276.610358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.085 3.915 3 N -0.467 5.467 4 C -0.312 4.312 5 H 0.107 0.893 6 C 0.056 3.944 7 N -0.868 5.868 8 Si 0.880 3.120 9 H -0.276 1.276 10 H -0.290 1.290 11 H -0.266 1.266 12 C 0.465 3.535 13 O -0.565 6.565 14 C -0.128 4.128 15 C -0.031 4.031 16 H 0.095 0.905 17 C -0.103 4.103 18 C -0.054 4.054 19 H 0.083 0.917 20 C -0.148 4.148 21 C -0.090 4.090 22 C -0.079 4.079 23 C -0.113 4.113 24 C -0.119 4.119 25 C -0.129 4.129 26 C -0.074 4.074 27 C -0.128 4.128 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.273 0.727 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.066 0.934 45 H 0.059 0.941 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.624 -5.361 20.308 21.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.038 4.038 3 N -0.189 5.189 4 C -0.439 4.439 5 H 0.124 0.876 6 C -0.149 4.149 7 N -0.505 5.505 8 Si 0.709 3.291 9 H -0.204 1.204 10 H -0.217 1.217 11 H -0.190 1.190 12 C 0.254 3.746 13 O -0.447 6.447 14 C -0.168 4.168 15 C -0.049 4.049 16 H 0.113 0.887 17 C -0.141 4.141 18 C -0.072 4.072 19 H 0.101 0.899 20 C -0.204 4.204 21 C -0.090 4.090 22 C -0.079 4.079 23 C -0.131 4.131 24 C -0.137 4.137 25 C -0.147 4.147 26 C -0.074 4.074 27 C -0.184 4.184 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.358 -4.800 20.078 20.688 hybrid contribution 0.192 -1.149 -0.065 1.167 sum -1.166 -5.949 20.013 20.911 Atomic orbital electron populations 1.22128 0.96267 1.00978 1.02692 1.21799 0.94751 0.85991 1.01298 1.43807 1.57467 1.11356 1.06283 1.19095 1.40259 0.96737 0.87779 0.87564 1.25314 0.96410 0.98330 0.94815 1.69739 1.42412 1.39446 0.98874 0.86948 0.79372 0.83696 0.79114 1.20380 1.21675 1.19009 1.20137 0.82249 0.87851 0.84372 1.90535 1.49287 1.18242 1.86617 1.21727 1.02242 0.99299 0.93537 1.20480 0.96231 0.98897 0.89331 0.88699 1.22417 0.94777 1.03511 0.93353 1.20710 0.92130 0.98807 0.95600 0.89895 1.21972 0.96734 1.00666 1.01069 1.20446 0.96486 0.99022 0.93009 1.20796 0.93761 0.97118 0.96192 1.20638 0.96808 0.99151 0.96519 1.20966 0.98947 1.00496 0.93321 1.20867 0.93441 1.01147 0.99251 1.19377 0.95608 0.98686 0.93706 1.21090 0.98133 1.01858 0.97300 0.91455 0.92716 0.92907 0.91182 0.92050 0.91682 0.90302 0.90092 0.89470 0.91253 0.92137 0.92158 0.92490 0.86332 0.86227 0.86398 0.91554 0.92154 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 10.16 37.16 0.38 -2.37 16 2 C 0.09 1.71 4.47 -4.04 -0.02 1.69 16 3 N -0.47 -11.25 2.27 -114.81 -0.26 -11.51 16 4 C -0.31 -8.83 9.47 -14.93 -0.14 -8.98 16 5 H 0.11 3.40 7.83 -52.49 -0.41 2.99 16 6 C 0.06 1.56 5.34 -17.47 -0.09 1.47 16 7 N -0.87 -25.25 13.96 55.50 0.77 -24.48 16 8 Si 0.88 20.71 24.74 -169.99 -4.21 16.51 16 9 H -0.28 -6.06 6.69 56.52 0.38 -5.68 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.15 7.08 56.52 0.40 -5.75 16 12 C 0.47 10.60 7.33 -10.99 -0.08 10.52 16 13 O -0.56 -14.74 14.87 5.55 0.08 -14.66 16 14 C -0.13 -2.20 3.73 -27.88 -0.10 -2.30 16 15 C -0.03 -0.50 2.49 -90.58 -0.23 -0.72 16 16 H 0.10 1.65 7.86 -51.93 -0.41 1.24 16 17 C -0.10 -1.61 5.24 -25.32 -0.13 -1.74 16 18 C -0.05 -0.69 3.34 -90.74 -0.30 -1.00 16 19 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 20 C -0.15 -1.59 7.80 37.16 0.29 -1.30 16 21 C -0.09 -1.19 5.46 -104.21 -0.57 -1.76 16 22 C -0.08 -1.12 5.62 -104.05 -0.58 -1.70 16 23 C -0.11 -1.44 9.71 -39.54 -0.38 -1.83 16 24 C -0.12 -1.34 10.05 -39.63 -0.40 -1.73 16 25 C -0.13 -1.42 9.67 -39.62 -0.38 -1.80 16 26 C -0.07 -0.86 5.86 -104.58 -0.61 -1.48 16 27 C -0.13 -1.15 9.64 36.00 0.35 -0.81 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.81 6.69 -51.93 -0.35 0.47 16 31 H 0.07 1.51 2.88 -51.93 -0.15 1.36 16 32 H 0.06 1.06 6.51 -51.93 -0.34 0.73 16 33 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.08 1.28 6.97 -51.93 -0.36 0.92 16 35 H 0.08 1.25 6.29 -51.93 -0.33 0.92 16 36 H 0.09 1.49 7.76 -51.93 -0.40 1.08 16 37 H 0.07 1.11 7.59 -51.93 -0.39 0.72 16 38 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 39 H 0.06 0.54 6.07 -51.93 -0.32 0.22 16 40 H 0.06 0.63 7.99 -51.93 -0.42 0.22 16 41 H 0.12 1.37 7.73 -52.48 -0.41 0.96 16 42 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.12 1.02 8.05 -52.49 -0.42 0.60 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.46 8.03 -51.93 -0.42 0.05 16 46 H 0.08 0.70 4.38 -51.93 -0.23 0.47 16 LS Contribution 351.75 15.07 5.30 5.30 Total: -1.00 -31.48 351.75 -8.36 -39.85 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -7.04 Total: 4.82 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -3.02 Total: -15.83 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.51 Total: -35.99 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.08 Total: -14.66 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.21 Total: 16.51 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.48 -8.36 -39.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489917791.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.879 kcal (2) G-P(sol) polarization free energy of solvation -31.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds