Wall clock time and date at job start Tue Mar 31 2020 09:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47545 * 2 1 4 4 H 1.08997 * 109.47661 * 179.82827 * 3 2 1 5 5 C 1.50702 * 109.47602 * 299.83218 * 3 2 1 6 6 H 1.07994 * 120.00518 * 119.98918 * 5 3 2 7 7 C 1.37885 * 119.99366 * 300.00029 * 5 3 2 8 8 N 1.31516 * 120.00182 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99574 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47273 * 60.00062 * 9 7 5 11 11 H 1.48505 * 109.47115 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47528 * 299.99918 * 9 7 5 13 13 N 1.46909 * 109.46778 * 59.82647 * 3 2 1 14 14 C 1.46903 * 110.99437 * 85.93236 * 13 3 2 15 15 C 1.50704 * 109.46626 * 175.55277 * 14 13 3 16 16 N 1.33395 * 126.27267 * 90.02204 * 15 14 13 17 17 C 1.30903 * 109.86932 * 179.97438 * 16 15 14 18 18 C 1.50699 * 125.31432 * 179.97438 * 17 16 15 19 19 C 1.53006 * 109.47057 * 300.02520 * 18 17 16 20 20 C 1.53001 * 109.47280 * 60.01947 * 18 17 16 21 21 N 1.35036 * 109.37601 * 359.97438 * 17 16 15 22 22 C 1.37057 * 133.12221 * 179.97438 * 21 17 16 23 23 C 1.34679 * 120.55392 * 179.23639 * 22 21 17 24 24 C 1.40810 * 120.61889 * 0.65177 * 23 22 21 25 25 C 1.35878 * 119.77311 * 359.58608 * 24 23 22 26 26 C 1.37996 * 126.26390 * 269.71407 * 15 14 13 27 27 H 1.09005 * 109.47414 * 55.58335 * 1 2 3 28 28 H 1.09006 * 109.47302 * 295.59137 * 1 2 3 29 29 H 1.08993 * 109.47602 * 175.58583 * 1 2 3 30 30 H 1.09003 * 109.47519 * 120.00552 * 2 1 3 31 31 H 1.09007 * 109.47194 * 240.00603 * 2 1 3 32 32 H 0.96996 * 119.99471 * 180.02562 * 8 7 5 33 33 H 1.00901 * 110.99578 * 209.88279 * 13 3 2 34 34 H 1.08994 * 109.46864 * 295.54442 * 14 13 3 35 35 H 1.08994 * 109.47486 * 55.55129 * 14 13 3 36 36 H 1.09000 * 109.47643 * 180.02562 * 18 17 16 37 37 H 1.08993 * 109.47110 * 59.99834 * 19 18 17 38 38 H 1.08999 * 109.47206 * 180.02562 * 19 18 17 39 39 H 1.09004 * 109.47025 * 299.99756 * 19 18 17 40 40 H 1.09009 * 109.46866 * 60.00439 * 20 18 17 41 41 H 1.08999 * 109.47106 * 180.02562 * 20 18 17 42 42 H 1.08993 * 109.47382 * 300.00468 * 20 18 17 43 43 H 1.08003 * 119.72592 * 359.97438 * 22 21 17 44 44 H 1.08008 * 119.68748 * 180.23734 * 23 22 21 45 45 H 1.08002 * 120.11504 * 179.61274 * 24 23 22 46 46 H 1.07995 * 120.41175 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1300 1.4425 0.0031 5 6 1.5412 2.1518 -1.2325 6 1 0.9200 3.0299 -1.1361 7 6 1.8778 1.6794 -2.4834 8 7 2.6345 0.6102 -2.6009 9 14 1.2589 2.5582 -4.0112 10 1 1.7535 3.9585 -4.0114 11 1 1.7579 1.8574 -5.2217 12 1 -0.2260 2.5578 -4.0152 13 7 1.5469 2.1361 1.1974 14 6 2.4393 1.9093 2.3421 15 6 1.9631 2.7215 3.5188 16 7 1.0976 2.3248 4.4531 17 6 0.9130 3.2839 5.3246 18 6 0.0040 3.2079 6.5242 19 6 -1.4314 2.9512 6.0609 20 6 0.4574 2.0661 7.4362 21 7 1.6643 4.3521 4.9811 22 6 1.8399 5.5920 5.5380 23 6 2.6841 6.4802 4.9791 24 6 3.3913 6.1569 3.8053 25 6 3.2282 4.9348 3.2342 26 6 2.3472 4.0098 3.8305 27 1 -0.3634 0.5809 -0.8478 28 1 -0.3634 0.4439 0.9269 29 1 -0.3634 -1.0245 -0.0791 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 2.8716 0.2782 -3.4809 33 1 1.4288 3.1225 1.0209 34 1 2.4322 0.8514 2.6042 35 1 3.4527 2.2116 2.0782 36 1 0.0460 4.1492 7.0722 37 1 -1.4735 2.0099 5.5129 38 1 -2.0890 2.8966 6.9285 39 1 -1.7545 3.7646 5.4112 40 1 1.4800 2.2490 7.7663 41 1 -0.2004 2.0109 8.3036 42 1 0.4153 1.1249 6.8882 43 1 1.3059 5.8548 6.4392 44 1 2.8147 7.4521 5.4319 45 1 4.0615 6.8777 3.3605 46 1 3.7652 4.6761 2.3337 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577758921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:33 Heat of formation + Delta-G solvation = 70.594269 kcal Electronic energy + Delta-G solvation = -24675.082165 eV Core-core repulsion = 21372.198585 eV Total energy + Delta-G solvation = -3302.883580 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.185 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.71278 -37.55615 -36.38256 -35.26239 -33.46594 -32.23969 -30.64766 -30.55513 -28.13388 -27.23992 -26.27113 -24.29651 -23.75980 -23.03822 -22.97069 -20.68717 -19.92330 -18.90564 -17.35510 -16.70109 -16.20218 -15.81368 -15.62048 -15.04122 -14.85738 -14.57220 -14.15089 -13.84985 -13.47859 -13.33785 -13.22274 -12.59022 -12.36388 -12.26677 -12.00862 -11.97029 -11.74227 -11.59529 -11.44186 -11.28445 -11.16664 -11.04390 -10.87463 -10.78299 -10.50282 -10.30530 -10.04135 -9.80233 -9.63540 -9.26545 -9.13520 -8.71132 -8.40689 -7.27609 -7.05916 -5.96346 -4.01558 0.84625 1.32394 2.66017 3.18898 3.33816 3.38571 3.41441 3.49308 4.25709 4.39006 4.45081 4.60560 4.81875 4.83397 5.01217 5.03814 5.09827 5.14589 5.34351 5.46689 5.54483 5.59672 5.66648 5.76620 5.79146 5.81483 5.88777 6.04252 6.14413 6.20608 6.24550 6.27066 6.45564 6.63219 6.67245 6.79863 6.85763 6.97652 7.30039 7.36782 7.41175 7.59382 7.84590 7.85861 7.92917 8.18966 8.35622 8.48696 8.75083 9.08114 9.62770 11.09361 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.016067 B = 0.003959 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.242728 B = 7069.959428 C = 8090.036052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.217 3.783 4 H 0.001 0.999 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.675 5.675 14 C 0.145 3.855 15 C 0.045 3.955 16 N -0.427 5.427 17 C 0.166 3.834 18 C 0.001 3.999 19 C -0.140 4.140 20 C -0.140 4.140 21 N -0.365 5.365 22 C 0.039 3.961 23 C -0.131 4.131 24 C -0.145 4.145 25 C -0.053 4.053 26 C -0.011 4.011 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.012 0.988 30 H 0.010 0.990 31 H 0.086 0.914 32 H 0.260 0.740 33 H 0.328 0.672 34 H 0.078 0.922 35 H 0.032 0.968 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.157 0.843 44 H 0.142 0.858 45 H 0.133 0.867 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.894 9.806 19.131 21.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.109 3.891 4 H 0.018 0.982 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.307 5.307 14 C 0.015 3.985 15 C -0.092 4.092 16 N -0.141 5.141 17 C -0.089 4.089 18 C -0.020 4.020 19 C -0.199 4.199 20 C -0.198 4.198 21 N -0.037 5.037 22 C -0.081 4.081 23 C -0.152 4.152 24 C -0.165 4.165 25 C -0.073 4.073 26 C -0.118 4.118 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.031 0.969 30 H 0.029 0.971 31 H 0.104 0.896 32 H 0.070 0.930 33 H 0.145 0.855 34 H 0.097 0.903 35 H 0.050 0.950 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.174 0.826 44 H 0.160 0.840 45 H 0.151 0.849 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.711 8.379 19.300 21.110 hybrid contribution 0.863 1.972 -1.159 2.445 sum -0.847 10.351 18.140 20.903 Atomic orbital electron populations 1.21437 0.97541 0.97292 1.01365 1.21418 0.95059 0.98174 0.99389 1.19157 0.92892 0.91569 0.85445 0.98167 1.21144 1.31551 1.11905 0.90338 0.92470 1.24868 0.95085 0.95000 0.98798 1.69879 1.36651 1.22699 1.23505 0.86659 0.79283 0.79601 0.82432 1.20457 1.21369 1.20250 1.60724 1.48692 1.15715 1.05565 1.20142 0.93294 0.98126 0.86979 1.21184 0.98599 0.91213 0.98250 1.69839 1.14876 1.27031 1.02369 1.23127 1.01380 0.82929 1.01444 1.19450 0.92952 0.99907 0.89652 1.21796 0.93459 1.03340 1.01257 1.21790 1.00752 0.98666 0.98551 1.42707 1.30308 1.10976 1.19673 1.21471 1.02137 0.84144 1.00383 1.20743 0.97515 0.99595 0.97343 1.20938 1.01811 0.97141 0.96638 1.20620 0.95445 0.91949 0.99238 1.19436 1.02727 0.97831 0.91846 0.92693 0.93792 0.96898 0.97079 0.89621 0.92955 0.85469 0.90322 0.95015 0.90683 0.90921 0.92056 0.92761 0.92943 0.91992 0.91051 0.82574 0.84001 0.84920 0.83741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.83 9.52 37.15 0.35 -2.47 16 2 C -0.10 -2.56 5.59 -26.74 -0.15 -2.71 16 3 C 0.22 5.48 2.30 -68.86 -0.16 5.32 16 4 H 0.00 0.02 7.71 -51.93 -0.40 -0.38 16 5 C -0.51 -13.84 7.26 -34.44 -0.25 -14.09 16 6 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 7 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 8 N -0.89 -25.26 11.32 55.43 0.63 -24.63 16 9 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 13 N -0.68 -14.99 5.64 -109.22 -0.62 -15.61 16 14 C 0.14 2.86 6.09 -4.97 -0.03 2.82 16 15 C 0.04 0.82 6.68 -82.00 -0.55 0.27 16 16 N -0.43 -7.69 11.19 -6.40 -0.07 -7.76 16 17 C 0.17 2.46 6.47 -155.09 -1.00 1.46 16 18 C 0.00 0.01 3.32 -91.77 -0.31 -0.30 16 19 C -0.14 -1.50 9.18 37.16 0.34 -1.15 16 20 C -0.14 -1.38 9.17 37.16 0.34 -1.04 16 21 N -0.37 -5.19 2.94 -58.15 -0.17 -5.36 16 22 C 0.04 0.41 10.70 -16.48 -0.18 0.23 16 23 C -0.13 -1.24 9.97 -39.87 -0.40 -1.63 16 24 C -0.14 -1.58 10.07 -39.46 -0.40 -1.97 16 25 C -0.05 -0.72 10.10 -39.39 -0.40 -1.12 16 26 C -0.01 -0.18 6.74 -84.09 -0.57 -0.74 16 27 H 0.05 1.39 7.07 -51.93 -0.37 1.02 16 28 H 0.04 1.02 7.74 -51.93 -0.40 0.62 16 29 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.01 0.25 7.60 -51.93 -0.39 -0.14 16 31 H 0.09 2.36 6.07 -51.93 -0.31 2.04 16 32 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.33 7.27 8.13 -39.29 -0.32 6.95 16 34 H 0.08 1.62 7.61 -51.93 -0.40 1.22 16 35 H 0.03 0.61 7.94 -51.93 -0.41 0.19 16 36 H 0.07 0.64 7.30 -51.93 -0.38 0.26 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.52 8.14 -51.92 -0.42 0.09 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.16 1.10 7.47 -52.48 -0.39 0.71 16 44 H 0.14 0.86 8.06 -52.48 -0.42 0.43 16 45 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 46 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 372.15 15.07 5.61 5.61 Total: -1.00 -30.97 372.15 -10.62 -41.59 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -7.54 Total: 5.31 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -3.44 Total: -15.44 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.23 Total: -53.36 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.97 -10.62 -41.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577758921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.186 kcal (2) G-P(sol) polarization free energy of solvation -30.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds