Wall clock time and date at job start Tue Mar 31 2020 09:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46931 * 2 1 4 4 C 1.53005 * 109.47325 * 119.99379 * 2 1 3 5 5 C 1.53005 * 109.46722 * 65.00074 * 4 2 1 6 6 N 1.46902 * 109.46741 * 180.02562 * 5 4 2 7 7 C 1.46896 * 111.00222 * 66.04937 * 6 5 4 8 8 C 1.50693 * 109.47387 * 199.66858 * 7 6 5 9 9 H 1.08000 * 120.00152 * 355.30330 * 8 7 6 10 10 C 1.37883 * 120.00228 * 175.30205 * 8 7 6 11 11 N 1.31512 * 119.99736 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99737 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.47074 * 89.99776 * 12 10 8 14 14 H 1.48499 * 109.46721 * 209.99802 * 12 10 8 15 15 H 1.48500 * 109.47058 * 329.99656 * 12 10 8 16 16 C 1.46900 * 110.99581 * 190.00206 * 6 5 4 17 17 C 1.50697 * 109.47453 * 73.77667 * 16 6 5 18 18 C 1.36507 * 120.18304 * 255.21263 * 17 16 6 19 19 C 1.38917 * 120.62964 * 179.97438 * 18 17 16 20 20 C 1.36630 * 120.81800 * 0.03335 * 19 18 17 21 21 C 1.39248 * 119.84603 * 359.97301 * 20 19 18 22 22 N 1.37045 * 133.84923 * 180.02562 * 21 20 19 23 23 H 0.97007 * 125.46210 * 359.96053 * 22 21 20 24 24 N 1.39875 * 109.07804 * 179.97438 * 22 21 20 25 25 C 1.30233 * 110.09242 * 359.97438 * 24 22 21 26 26 C 1.39908 * 120.18232 * 75.22618 * 17 16 6 27 27 H 1.08998 * 109.47577 * 300.00117 * 1 2 3 28 28 H 1.08994 * 109.47374 * 60.00678 * 1 2 3 29 29 H 1.09004 * 109.46618 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47577 * 239.99883 * 2 1 3 31 31 H 1.09004 * 109.46773 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46491 * 299.99575 * 3 2 1 33 33 H 1.08993 * 109.47162 * 60.00054 * 3 2 1 34 34 H 1.08993 * 109.47134 * 305.00624 * 4 2 1 35 35 H 1.08993 * 109.47397 * 185.00202 * 4 2 1 36 36 H 1.08993 * 109.46867 * 60.00386 * 5 4 2 37 37 H 1.08993 * 109.47289 * 300.00194 * 5 4 2 38 38 H 1.09000 * 109.46837 * 319.67278 * 7 6 5 39 39 H 1.08999 * 109.47289 * 79.66936 * 7 6 5 40 40 H 0.97005 * 119.99534 * 180.02562 * 11 10 8 41 41 H 1.09002 * 109.47456 * 313.77260 * 16 6 5 42 42 H 1.09007 * 109.47071 * 193.77153 * 16 6 5 43 43 H 1.07998 * 119.68141 * 0.02562 * 18 17 16 44 44 H 1.07997 * 119.59339 * 180.02562 * 19 18 17 45 45 H 1.07995 * 120.07233 * 180.02562 * 20 19 18 46 46 H 1.07999 * 126.10653 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6352 -2.1954 1.1881 6 7 2.1244 -2.8876 2.3879 7 6 1.4504 -2.3900 3.5945 8 6 2.2727 -2.7370 4.8087 9 1 3.1634 -3.3386 4.7037 10 6 1.8880 -2.2864 6.0537 11 7 2.6060 -2.5889 7.1132 12 14 0.3470 -1.2464 6.2354 13 1 -0.8228 -2.1312 6.4682 14 1 0.5062 -0.3229 7.3874 15 1 0.1325 -0.4583 4.9952 16 6 1.9653 -4.3422 2.2580 17 6 2.9954 -4.8764 1.2965 18 6 2.6305 -5.2414 0.0328 19 6 3.5725 -5.7345 -0.8613 20 6 4.8826 -5.8655 -0.4964 21 6 5.2845 -5.5013 0.7862 22 7 6.4875 -5.5101 1.4425 23 1 7.3315 -5.8056 1.0667 24 7 6.3032 -5.0249 2.7414 25 6 5.0526 -4.7142 2.9297 26 6 4.3310 -5.0012 1.6942 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9563 0.8899 34 1 1.6054 -0.2616 2.1370 35 1 3.1263 -0.6442 1.2953 36 1 2.0699 -2.6549 0.3005 37 1 0.5490 -2.2723 1.1422 38 1 1.3390 -1.3077 3.5282 39 1 0.4666 -2.8520 3.6778 40 1 2.3351 -2.2722 7.9892 41 1 0.9669 -4.5665 1.8825 42 1 2.1007 -4.8110 3.2328 43 1 1.5998 -5.1453 -0.2751 44 1 3.2655 -6.0179 -1.8572 45 1 5.6049 -6.2497 -1.2013 46 1 4.6255 -4.3166 3.8385 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600116353.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:43:22 Heat of formation + Delta-G solvation = 74.646985 kcal Electronic energy + Delta-G solvation = -24983.802182 eV Core-core repulsion = 21681.094342 eV Total energy + Delta-G solvation = -3302.707841 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.185 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.92221 -38.02568 -36.81430 -35.38529 -32.68993 -32.11999 -30.11431 -29.27661 -29.04178 -27.28170 -27.04084 -24.70124 -22.64110 -22.24180 -21.72894 -20.85892 -20.02062 -19.38879 -17.20755 -16.81902 -16.39352 -15.23946 -15.00424 -14.92868 -14.74688 -14.41878 -14.33904 -13.88941 -13.51674 -13.31674 -13.23250 -13.07251 -12.48194 -12.29681 -12.08181 -12.01544 -11.81372 -11.51382 -11.48216 -11.24684 -11.06301 -10.83971 -10.69841 -10.51679 -10.43055 -10.33456 -10.26633 -9.85993 -9.78598 -9.75163 -9.24463 -8.56017 -8.33732 -7.69179 -7.34713 -6.04359 -4.00882 1.22479 1.77251 2.92565 3.04156 3.28274 3.36656 3.37598 4.01123 4.42278 4.73970 4.83895 5.04076 5.08168 5.13882 5.15505 5.18417 5.26145 5.33256 5.52243 5.56868 5.61915 5.71902 5.77054 5.88046 5.89609 5.96209 5.99552 6.01722 6.12068 6.13093 6.23299 6.28591 6.33341 6.39787 6.44353 6.60251 6.65936 6.75786 6.77691 6.85565 6.93097 7.02087 7.13864 7.57292 7.66080 7.92107 7.97023 8.04036 8.67020 9.03627 9.57790 11.08375 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.009553 B = 0.006090 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.385340 B = 4596.904113 C = 6545.754113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.145 4.145 4 C -0.111 4.111 5 C 0.054 3.946 6 N -0.517 5.517 7 C 0.157 3.843 8 C -0.505 4.505 9 H 0.082 0.918 10 C 0.070 3.930 11 N -0.899 5.899 12 Si 0.871 3.129 13 H -0.278 1.278 14 H -0.287 1.287 15 H -0.267 1.267 16 C 0.091 3.909 17 C 0.025 3.975 18 C -0.172 4.172 19 C -0.068 4.068 20 C -0.157 4.157 21 C 0.124 3.876 22 N -0.523 5.523 23 H 0.433 0.567 24 N -0.267 5.267 25 C 0.110 3.890 26 C -0.153 4.153 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.023 0.977 38 H 0.036 0.964 39 H -0.016 1.016 40 H 0.263 0.737 41 H 0.033 0.967 42 H 0.098 0.902 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.117 0.883 46 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.252 -2.069 -17.035 17.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.149 4.149 5 C -0.074 4.074 6 N -0.241 5.241 7 C 0.031 3.969 8 C -0.543 4.543 9 H 0.099 0.901 10 C -0.132 4.132 11 N -0.538 5.538 12 Si 0.698 3.302 13 H -0.204 1.204 14 H -0.213 1.213 15 H -0.192 1.192 16 C -0.036 4.036 17 C 0.021 3.979 18 C -0.192 4.192 19 C -0.089 4.089 20 C -0.180 4.180 21 C 0.008 3.992 22 N -0.237 5.237 23 H 0.276 0.724 24 N -0.079 5.079 25 C -0.088 4.088 26 C -0.161 4.161 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.041 0.959 38 H 0.053 0.947 39 H 0.001 0.999 40 H 0.073 0.927 41 H 0.051 0.949 42 H 0.117 0.883 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.135 0.865 46 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 1.441 -1.972 -16.209 16.392 hybrid contribution -1.975 0.308 -0.441 2.047 sum -0.534 -1.664 -16.650 16.742 Atomic orbital electron populations 1.21890 0.95755 1.01710 1.01162 1.21097 0.95520 0.96020 0.98808 1.21820 1.00965 0.96223 1.01246 1.21659 1.01654 0.94608 0.96966 1.22147 0.96620 0.94589 0.94056 1.61922 1.58198 1.01539 1.02413 1.20309 0.92515 0.95784 0.88288 1.21021 1.11128 1.33156 0.88978 0.90057 1.24873 0.96457 0.95944 0.95923 1.69884 1.38856 1.46207 0.98814 0.86937 0.84230 0.81041 0.77962 1.20441 1.21290 1.19182 1.21059 0.93580 0.90101 0.98906 1.19295 0.92354 0.92357 0.93852 1.20520 0.99633 1.05458 0.93620 1.20569 0.92204 0.97150 0.98984 1.19656 0.96845 1.08162 0.93332 1.18867 0.87129 0.98898 0.94355 1.45972 1.08063 1.59865 1.09761 0.72396 1.76660 1.19587 1.15669 0.96017 1.25585 0.88920 0.95602 0.98660 1.19696 0.93940 1.08167 0.94319 0.92812 0.93371 0.92545 0.91650 0.92751 0.93270 0.92743 0.91467 0.91314 0.91789 0.95894 0.94653 0.99873 0.92712 0.94873 0.88349 0.86287 0.86009 0.86457 0.77553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.95 37.16 0.33 -1.45 16 2 C -0.10 -1.22 2.92 -90.62 -0.26 -1.48 16 3 C -0.15 -1.70 9.19 37.16 0.34 -1.36 16 4 C -0.11 -1.77 4.66 -26.73 -0.12 -1.89 16 5 C 0.05 0.89 4.55 -3.82 -0.02 0.87 16 6 N -0.52 -10.02 4.36 -237.52 -1.04 -11.06 16 7 C 0.16 3.55 3.69 -4.98 -0.02 3.54 16 8 C -0.50 -13.36 9.09 -34.44 -0.31 -13.67 16 9 H 0.08 2.27 6.33 -52.49 -0.33 1.94 16 10 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 11 N -0.90 -26.56 13.96 55.43 0.77 -25.79 16 12 Si 0.87 20.89 27.56 -169.99 -4.69 16.20 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.27 -6.15 6.41 56.52 0.36 -5.79 16 16 C 0.09 1.62 4.87 -4.98 -0.02 1.59 16 17 C 0.02 0.40 4.76 -104.62 -0.50 -0.10 16 18 C -0.17 -2.33 8.85 -39.95 -0.35 -2.68 16 19 C -0.07 -0.81 9.96 -39.91 -0.40 -1.21 16 20 C -0.16 -1.97 10.03 -39.79 -0.40 -2.37 16 21 C 0.12 1.88 7.34 -84.17 -0.62 1.27 16 22 N -0.52 -7.72 7.37 32.36 0.24 -7.48 16 23 H 0.43 4.81 8.96 -182.76 -1.64 3.17 16 24 N -0.27 -4.78 12.55 31.87 0.40 -4.38 16 25 C 0.11 2.06 12.15 -15.15 -0.18 1.88 16 26 C -0.15 -2.65 6.15 -105.21 -0.65 -3.29 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.68 6.56 -51.93 -0.34 0.34 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.19 6.25 -51.93 -0.32 0.87 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 0.99 6.75 -51.93 -0.35 0.64 16 37 H 0.02 0.37 6.54 -51.93 -0.34 0.03 16 38 H 0.04 0.82 4.61 -51.93 -0.24 0.58 16 39 H -0.02 -0.38 7.66 -51.93 -0.40 -0.77 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.03 0.54 7.82 -51.93 -0.41 0.13 16 42 H 0.10 1.94 7.27 -51.92 -0.38 1.56 16 43 H 0.12 1.41 7.98 -52.49 -0.42 0.99 16 44 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 45 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 46 H 0.21 4.15 6.40 -52.49 -0.34 3.82 16 LS Contribution 363.59 15.07 5.48 5.48 Total: -1.00 -29.81 363.59 -10.59 -40.40 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -8.48 Total: 5.16 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -3.28 Total: -18.53 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.38 Total: -48.71 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.69 Total: 16.20 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.81 -10.59 -40.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600116353.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.048 kcal (2) G-P(sol) polarization free energy of solvation -29.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds