Wall clock time and date at job start Tue Mar 31 2020 09:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46931 * 2 1 4 4 C 1.53005 * 109.47325 * 119.99379 * 2 1 3 5 5 C 1.53005 * 109.46722 * 65.00074 * 4 2 1 6 6 N 1.46902 * 109.46741 * 180.02562 * 5 4 2 7 7 C 1.46896 * 111.00222 * 66.04937 * 6 5 4 8 8 C 1.50693 * 109.47387 * 199.66858 * 7 6 5 9 9 H 1.08000 * 120.00152 * 355.30330 * 8 7 6 10 10 C 1.37883 * 120.00228 * 175.30205 * 8 7 6 11 11 N 1.31512 * 119.99736 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99737 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.47074 * 89.99776 * 12 10 8 14 14 H 1.48499 * 109.46721 * 209.99802 * 12 10 8 15 15 H 1.48500 * 109.47058 * 329.99656 * 12 10 8 16 16 C 1.46900 * 110.99581 * 190.00206 * 6 5 4 17 17 C 1.50697 * 109.47453 * 73.77667 * 16 6 5 18 18 C 1.36507 * 120.18304 * 255.21263 * 17 16 6 19 19 C 1.38917 * 120.62964 * 179.97438 * 18 17 16 20 20 C 1.36630 * 120.81800 * 0.03335 * 19 18 17 21 21 C 1.39248 * 119.84603 * 359.97301 * 20 19 18 22 22 N 1.37045 * 133.84923 * 180.02562 * 21 20 19 23 23 H 0.97007 * 125.46210 * 359.96053 * 22 21 20 24 24 N 1.39875 * 109.07804 * 179.97438 * 22 21 20 25 25 C 1.30233 * 110.09242 * 359.97438 * 24 22 21 26 26 C 1.39908 * 120.18232 * 75.22618 * 17 16 6 27 27 H 1.08998 * 109.47577 * 300.00117 * 1 2 3 28 28 H 1.08994 * 109.47374 * 60.00678 * 1 2 3 29 29 H 1.09004 * 109.46618 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47577 * 239.99883 * 2 1 3 31 31 H 1.09004 * 109.46773 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46491 * 299.99575 * 3 2 1 33 33 H 1.08993 * 109.47162 * 60.00054 * 3 2 1 34 34 H 1.08993 * 109.47134 * 305.00624 * 4 2 1 35 35 H 1.08993 * 109.47397 * 185.00202 * 4 2 1 36 36 H 1.08993 * 109.46867 * 60.00386 * 5 4 2 37 37 H 1.08993 * 109.47289 * 300.00194 * 5 4 2 38 38 H 1.09000 * 109.46837 * 319.67278 * 7 6 5 39 39 H 1.08999 * 109.47289 * 79.66936 * 7 6 5 40 40 H 0.97005 * 119.99534 * 180.02562 * 11 10 8 41 41 H 1.09002 * 109.47456 * 313.77260 * 16 6 5 42 42 H 1.09007 * 109.47071 * 193.77153 * 16 6 5 43 43 H 1.07998 * 119.68141 * 0.02562 * 18 17 16 44 44 H 1.07997 * 119.59339 * 180.02562 * 19 18 17 45 45 H 1.07995 * 120.07233 * 180.02562 * 20 19 18 46 46 H 1.07999 * 126.10653 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6352 -2.1954 1.1881 6 7 2.1244 -2.8876 2.3879 7 6 1.4504 -2.3900 3.5945 8 6 2.2727 -2.7370 4.8087 9 1 3.1634 -3.3386 4.7037 10 6 1.8880 -2.2864 6.0537 11 7 2.6060 -2.5889 7.1132 12 14 0.3470 -1.2464 6.2354 13 1 -0.8228 -2.1312 6.4682 14 1 0.5062 -0.3229 7.3874 15 1 0.1325 -0.4583 4.9952 16 6 1.9653 -4.3422 2.2580 17 6 2.9954 -4.8764 1.2965 18 6 2.6305 -5.2414 0.0328 19 6 3.5725 -5.7345 -0.8613 20 6 4.8826 -5.8655 -0.4964 21 6 5.2845 -5.5013 0.7862 22 7 6.4875 -5.5101 1.4425 23 1 7.3315 -5.8056 1.0667 24 7 6.3032 -5.0249 2.7414 25 6 5.0526 -4.7142 2.9297 26 6 4.3310 -5.0012 1.6942 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9563 0.8899 34 1 1.6054 -0.2616 2.1370 35 1 3.1263 -0.6442 1.2953 36 1 2.0699 -2.6549 0.3005 37 1 0.5490 -2.2723 1.1422 38 1 1.3390 -1.3077 3.5282 39 1 0.4666 -2.8520 3.6778 40 1 2.3351 -2.2722 7.9892 41 1 0.9669 -4.5665 1.8825 42 1 2.1007 -4.8110 3.2328 43 1 1.5998 -5.1453 -0.2751 44 1 3.2655 -6.0179 -1.8572 45 1 5.6049 -6.2497 -1.2013 46 1 4.6255 -4.3166 3.8385 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600116353.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:43:21 Heat of formation + Delta-G solvation = 56.669394 kcal Electronic energy + Delta-G solvation = -24984.581749 eV Core-core repulsion = 21681.094342 eV Total energy + Delta-G solvation = -3303.487408 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.185 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.14037 -39.39491 -37.96250 -36.62962 -34.61835 -33.50218 -31.37006 -30.66495 -30.39233 -28.82222 -27.97405 -26.08281 -24.22793 -23.53297 -22.90947 -22.23378 -21.35308 -20.63992 -18.96845 -18.29530 -17.55270 -16.73138 -16.28009 -16.15324 -16.03399 -15.89063 -15.61514 -15.42297 -14.74245 -14.61875 -14.58158 -14.29517 -14.22075 -13.60018 -13.52320 -13.17127 -13.01536 -12.73194 -12.67066 -12.61489 -12.48510 -12.36561 -12.00679 -11.82392 -11.77134 -11.58896 -11.52940 -11.45587 -11.33112 -11.16987 -10.98063 -10.69889 -9.50976 -8.93931 -8.77211 -8.20353 -6.20883 0.06090 0.65879 1.35624 1.37838 1.47061 1.59450 1.89979 2.38579 2.84741 3.12899 3.41013 3.66772 3.81603 3.98513 4.01500 4.08178 4.14602 4.21297 4.36000 4.40223 4.47613 4.54633 4.67439 4.70770 4.77071 4.84762 4.89358 4.90771 4.98763 5.02247 5.06104 5.08873 5.11911 5.16950 5.23284 5.26076 5.36089 5.48714 5.53190 5.58574 5.61997 5.67955 5.78084 6.02253 6.11848 6.48110 6.50603 6.69780 6.76144 6.87063 7.41587 8.95652 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.009553 B = 0.006090 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.385340 B = 4596.904113 C = 6545.754113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.145 4.145 4 C -0.108 4.108 5 C 0.059 3.941 6 N -0.532 5.532 7 C 0.169 3.831 8 C -0.503 4.503 9 H 0.049 0.951 10 C 0.010 3.990 11 N -0.948 5.948 12 Si 0.935 3.065 13 H -0.269 1.269 14 H -0.287 1.287 15 H -0.250 1.250 16 C 0.098 3.902 17 C -0.001 4.001 18 C -0.159 4.159 19 C -0.058 4.058 20 C -0.147 4.147 21 C 0.115 3.885 22 N -0.508 5.508 23 H 0.449 0.551 24 N -0.286 5.286 25 C 0.084 3.916 26 C -0.179 4.179 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.043 0.957 35 H 0.049 0.951 36 H 0.080 0.920 37 H 0.034 0.966 38 H 0.034 0.966 39 H -0.016 1.016 40 H 0.263 0.737 41 H 0.051 0.949 42 H 0.061 0.939 43 H 0.143 0.857 44 H 0.168 0.832 45 H 0.155 0.845 46 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.711 -2.170 -21.614 21.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 C -0.202 4.202 4 C -0.146 4.146 5 C -0.068 4.068 6 N -0.256 5.256 7 C 0.042 3.958 8 C -0.541 4.541 9 H 0.067 0.933 10 C -0.187 4.187 11 N -0.589 5.589 12 Si 0.760 3.240 13 H -0.195 1.195 14 H -0.213 1.213 15 H -0.174 1.174 16 C -0.029 4.029 17 C -0.004 4.004 18 C -0.180 4.180 19 C -0.078 4.078 20 C -0.169 4.169 21 C -0.001 4.001 22 N -0.226 5.226 23 H 0.296 0.704 24 N -0.100 5.100 25 C -0.114 4.114 26 C -0.187 4.187 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.002 0.998 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.161 0.839 44 H 0.185 0.815 45 H 0.173 0.827 46 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -0.014 -2.080 -20.821 20.925 hybrid contribution -1.412 0.234 0.866 1.673 sum -1.427 -1.846 -19.955 20.091 Atomic orbital electron populations 1.21874 0.94831 1.01903 1.01708 1.21061 0.96209 0.96239 0.97310 1.21818 1.00796 0.95709 1.01877 1.21624 1.00351 0.94714 0.97886 1.22186 0.97226 0.94476 0.92956 1.61801 1.58403 1.02926 1.02479 1.20019 0.91782 0.95578 0.88396 1.21343 1.10313 1.31688 0.90800 0.93328 1.25724 0.99864 0.97538 0.95582 1.70050 1.41201 1.48284 0.99404 0.85892 0.80236 0.79480 0.78401 1.19480 1.21313 1.17363 1.20913 0.95237 0.88805 0.97963 1.19205 0.91391 0.94787 0.95000 1.20850 1.01322 1.03503 0.92277 1.21071 0.91278 0.95125 1.00372 1.20163 0.98123 1.06397 0.92217 1.19214 0.86382 0.99273 0.95273 1.45895 1.09030 1.59051 1.08587 0.70448 1.76521 1.19253 1.16112 0.98093 1.25164 0.89936 0.97354 0.98914 1.19835 0.95239 1.09631 0.94014 0.93898 0.91219 0.92521 0.90274 0.93099 0.91125 0.93618 0.93829 0.93207 0.90184 0.94824 0.94842 0.99793 0.92805 0.93118 0.92022 0.83939 0.81501 0.82715 0.80828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 8.95 71.98 0.64 -2.44 16 2 C -0.09 -2.08 2.92 -10.79 -0.03 -2.11 16 3 C -0.14 -3.11 9.19 71.98 0.66 -2.45 16 4 C -0.11 -3.37 4.66 30.60 0.14 -3.23 16 5 C 0.06 1.87 4.55 86.30 0.39 2.26 16 6 N -0.53 -21.09 4.36 -905.39 -3.95 -25.04 16 7 C 0.17 7.87 3.69 85.56 0.32 8.18 16 8 C -0.50 -28.29 9.09 25.60 0.23 -28.06 16 9 H 0.05 3.00 6.33 -2.91 -0.02 2.98 16 10 C 0.01 0.57 5.47 84.66 0.46 1.03 16 11 N -0.95 -59.20 13.96 21.45 0.30 -58.90 16 12 Si 0.94 44.08 27.56 68.60 1.89 45.97 16 13 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 14 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 15 H -0.25 -10.97 6.41 99.48 0.64 -10.33 16 16 C 0.10 3.57 4.87 85.56 0.42 3.98 16 17 C 0.00 -0.02 4.76 -19.87 -0.09 -0.12 16 18 C -0.16 -3.74 8.85 22.03 0.19 -3.54 16 19 C -0.06 -1.07 9.96 22.06 0.22 -0.85 16 20 C -0.15 -3.03 10.03 22.14 0.22 -2.81 16 21 C 0.11 3.33 7.34 39.21 0.29 3.62 16 22 N -0.51 -14.82 7.37 -51.53 -0.38 -15.20 16 23 H 0.45 9.39 8.96 -213.46 -1.91 7.48 16 24 N -0.29 -10.83 12.55 -53.09 -0.67 -11.49 16 25 C 0.08 3.41 12.15 86.92 1.06 4.47 16 26 C -0.18 -6.34 6.15 -20.24 -0.12 -6.46 16 27 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.19 6.56 -2.39 -0.02 1.17 16 30 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 31 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.04 1.55 6.25 -2.39 -0.01 1.54 16 35 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.08 2.28 6.75 -2.39 -0.02 2.26 16 37 H 0.03 1.00 6.54 -2.39 -0.02 0.99 16 38 H 0.03 1.58 4.61 -2.39 -0.01 1.57 16 39 H -0.02 -0.72 7.66 -2.39 -0.02 -0.74 16 40 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 41 H 0.05 1.61 7.82 -2.39 -0.02 1.59 16 42 H 0.06 2.64 7.27 -2.38 -0.02 2.62 16 43 H 0.14 2.67 7.98 -2.91 -0.02 2.64 16 44 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 45 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 46 H 0.17 8.12 6.40 -2.91 -0.02 8.10 16 Total: -1.00 -69.59 363.59 1.19 -68.40 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: -1.00 Total: 24.79 kcal Atomic # 6 Polarization: -33.52 SS G_CDS: 5.00 Total: -28.53 kcal Atomic # 7 Polarization: -105.94 SS G_CDS: -4.69 Total: -110.63 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.89 Total: 45.97 kcal Total: -69.59 1.19 -68.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600116353.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.065 kcal (2) G-P(sol) polarization free energy of solvation -69.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds