Wall clock time and date at job start Tue Mar 31 2020 09:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00198 * 2 1 4 4 H 1.48509 * 109.46984 * 274.46406 * 3 2 1 5 5 H 1.48496 * 109.47258 * 34.46208 * 3 2 1 6 6 H 1.48497 * 109.47471 * 154.46461 * 3 2 1 7 7 C 1.37877 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99867 * 356.64121 * 7 2 1 9 9 C 1.50703 * 120.00157 * 176.64824 * 7 2 1 10 10 C 1.52999 * 115.54754 * 294.64653 * 9 7 2 11 11 N 1.46900 * 109.47103 * 301.65170 * 10 9 7 12 12 C 1.44182 * 111.00286 * 304.37520 * 11 10 9 13 13 C 1.54318 * 112.62048 * 217.52521 * 12 11 10 14 14 C 1.54318 * 111.72140 * 318.91557 * 13 12 11 15 15 N 1.44182 * 112.61379 * 318.92236 * 14 13 12 16 16 C 1.39170 * 110.99780 * 217.52553 * 15 14 13 17 17 C 1.39470 * 120.86593 * 274.94274 * 16 15 14 18 18 C 1.37899 * 119.06934 * 179.73500 * 17 16 15 19 19 N 1.32003 * 120.83476 * 0.55108 * 18 17 16 20 20 C 1.31990 * 121.91353 * 359.72042 * 19 18 17 21 21 C 1.37897 * 120.84228 * 0.02562 * 20 19 18 22 22 C 1.48084 * 109.89615 * 94.35476 * 15 14 13 23 23 C 1.46091 * 112.15707 * 279.63556 * 22 15 14 24 24 C 1.53001 * 117.49907 * 80.31672 * 9 7 2 25 25 C 1.53000 * 117.49984 * 148.97692 * 9 7 2 26 26 H 0.97004 * 120.00165 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46804 * 181.65835 * 10 9 7 28 28 H 1.08992 * 109.47377 * 61.65340 * 10 9 7 29 29 H 1.09007 * 108.85065 * 96.71405 * 12 11 10 30 30 H 1.08996 * 108.85174 * 338.33776 * 12 11 10 31 31 H 1.09000 * 109.03140 * 198.33898 * 13 12 11 32 32 H 1.09000 * 108.96927 * 79.45354 * 13 12 11 33 33 H 1.09008 * 108.85433 * 198.11351 * 14 13 12 34 34 H 1.08997 * 108.85467 * 79.73228 * 14 13 12 35 35 H 1.08001 * 120.46628 * 359.97314 * 17 16 15 36 36 H 1.07997 * 119.58304 * 180.24798 * 18 17 16 37 37 H 1.08003 * 119.57700 * 179.97438 * 20 19 18 38 38 H 1.07998 * 120.46451 * 180.02562 * 21 20 19 39 39 H 1.08998 * 108.94321 * 158.94314 * 22 15 14 40 40 H 1.08996 * 108.94348 * 40.32090 * 22 15 14 41 41 H 1.08997 * 108.94209 * 181.37876 * 23 22 15 42 42 H 1.09005 * 108.94539 * 299.99973 * 23 22 15 43 43 H 1.09001 * 117.49386 * 215.00393 * 24 9 7 44 44 H 1.08994 * 117.49793 * 0.02562 * 24 9 7 45 45 H 1.08998 * 117.49996 * 359.97204 * 25 9 7 46 46 H 1.09001 * 117.50197 * 144.97682 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4023 2.1008 -1.3959 5 1 1.4970 2.6235 0.7922 6 1 3.5907 1.4147 0.6035 7 6 2.0045 -1.1941 -0.0005 8 1 1.4658 -2.1286 0.0538 9 6 3.5096 -1.1952 -0.0768 10 6 4.1046 -0.6564 -1.3793 11 7 3.6015 -1.4463 -2.5111 12 6 3.8781 -2.8491 -2.3257 13 6 4.2553 -3.5589 -3.6431 14 6 3.3723 -3.0889 -4.8182 15 7 1.9879 -2.9366 -4.4450 16 6 1.1460 -3.3430 -5.4760 17 6 0.7986 -2.4666 -6.5038 18 6 -0.0339 -2.9100 -7.5097 19 7 -0.5084 -4.1418 -7.5016 20 6 -0.2076 -4.9991 -6.5441 21 6 0.6225 -4.6355 -5.5048 22 6 1.7203 -1.5308 -4.0643 23 6 2.1471 -1.2392 -2.6979 24 6 4.2827 -0.9290 1.2164 25 6 4.2514 -2.3381 0.6191 26 1 -0.4850 0.8401 -0.0004 27 1 5.1914 -0.7296 -1.3398 28 1 3.8151 0.3866 -1.5070 29 1 2.9940 -3.3301 -1.9071 30 1 4.7019 -2.9554 -1.6200 31 1 4.1333 -4.6344 -3.5149 32 1 5.2987 -3.3448 -3.8747 33 1 3.4415 -3.8188 -5.6248 34 1 3.7471 -2.1313 -5.1794 35 1 1.1794 -1.4560 -6.5137 36 1 -0.3049 -2.2395 -8.3118 37 1 -0.6176 -5.9978 -6.5747 38 1 0.8650 -5.3420 -4.7248 39 1 0.6508 -1.3386 -4.1496 40 1 2.2525 -0.8712 -4.7496 41 1 1.9043 -0.2025 -2.4650 42 1 1.6059 -1.8905 -2.0115 43 1 5.2153 -0.3701 1.1391 44 1 3.7027 -0.7535 2.1224 45 1 3.6508 -3.0890 1.1326 46 1 5.1632 -2.7064 0.1489 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602850482.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:15:17 Heat of formation + Delta-G solvation = 96.958090 kcal Electronic energy + Delta-G solvation = -25876.180997 eV Core-core repulsion = 22574.440638 eV Total energy + Delta-G solvation = -3301.740359 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.185 amu Computer time = 5.47 seconds Orbital eigenvalues (eV) -40.57120 -39.00778 -37.32310 -34.69757 -32.54848 -31.99314 -31.31973 -30.89007 -28.16209 -26.35188 -25.23349 -24.20511 -23.30898 -22.55097 -21.58121 -20.12153 -19.72450 -18.83742 -17.40005 -16.38164 -16.22778 -15.72560 -15.42539 -14.95748 -14.87473 -14.38898 -14.29809 -13.83938 -13.70665 -13.60845 -13.57303 -12.99594 -12.72145 -12.56439 -12.06484 -11.94852 -11.64222 -11.34158 -11.05603 -10.95827 -10.67297 -10.59049 -10.44054 -10.33335 -10.06151 -9.84903 -9.58824 -9.45462 -9.44370 -9.13466 -9.00253 -8.72447 -8.51756 -8.18896 -7.43254 -6.17254 -4.11667 1.18445 1.28738 3.20359 3.33641 3.40292 3.83319 3.88834 4.35506 4.48439 4.62367 4.85953 4.99009 5.06296 5.13136 5.19738 5.24748 5.36726 5.49612 5.61661 5.73280 5.75126 5.79357 5.82974 5.87528 5.92109 5.97352 6.05170 6.15975 6.20054 6.26215 6.34276 6.36142 6.44917 6.50093 6.61460 6.66288 6.71570 6.77412 6.83000 7.06359 7.13144 7.18230 7.39561 7.50676 7.68077 7.90108 8.01314 8.03251 8.44602 8.83359 9.45175 10.93614 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.018989 B = 0.004854 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.173259 B = 5766.684639 C = 6473.501591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.081 3.919 3 Si 0.863 3.137 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.250 1.250 7 C -0.476 4.476 8 H 0.075 0.925 9 C -0.030 4.030 10 C 0.089 3.911 11 N -0.523 5.523 12 C 0.065 3.935 13 C -0.103 4.103 14 C 0.077 3.923 15 N -0.494 5.494 16 C 0.156 3.844 17 C -0.212 4.212 18 C 0.107 3.893 19 N -0.501 5.501 20 C 0.104 3.896 21 C -0.162 4.162 22 C 0.067 3.933 23 C 0.058 3.942 24 C -0.195 4.195 25 C -0.182 4.182 26 H 0.264 0.736 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.132 0.868 36 H 0.151 0.849 37 H 0.155 0.845 38 H 0.139 0.861 39 H 0.071 0.929 40 H 0.038 0.962 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.066 0.934 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.559 -5.520 -10.808 13.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.122 4.122 3 Si 0.691 3.309 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.174 1.174 7 C -0.513 4.513 8 H 0.093 0.907 9 C -0.032 4.032 10 C -0.039 4.039 11 N -0.245 5.245 12 C -0.065 4.065 13 C -0.142 4.142 14 C -0.049 4.049 15 N -0.213 5.213 16 C 0.052 3.948 17 C -0.235 4.235 18 C -0.050 4.050 19 N -0.211 5.211 20 C -0.053 4.053 21 C -0.183 4.183 22 C -0.059 4.059 23 C -0.069 4.069 24 C -0.234 4.234 25 C -0.219 4.219 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.150 0.850 36 H 0.168 0.832 37 H 0.172 0.828 38 H 0.156 0.844 39 H 0.089 0.911 40 H 0.056 0.944 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.085 0.915 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.026 -5.792 -11.480 13.806 hybrid contribution 0.648 1.586 0.991 1.979 sum 5.674 -4.205 -10.489 12.645 Atomic orbital electron populations 1.69890 1.06206 1.27012 1.49840 1.24842 0.94406 0.98624 0.94302 0.87114 0.81679 0.83949 0.78196 1.20565 1.22138 1.17358 1.20164 0.86459 0.94215 1.50487 0.90678 1.20236 0.95030 0.98151 0.89785 1.21897 0.96603 0.96549 0.88840 1.61825 1.15406 1.07500 1.39739 1.21717 1.00980 0.89088 0.94700 1.22048 0.97706 0.98991 0.95475 1.21739 0.85842 1.00493 0.96855 1.58854 1.03977 1.24174 1.34315 1.19326 0.93401 0.93399 0.88633 1.22712 1.02824 1.02084 0.95839 1.22547 0.93053 0.92438 0.96982 1.67681 1.23343 1.03571 1.26532 1.22639 0.94256 0.98844 0.89577 1.22050 0.99107 0.96781 1.00378 1.21468 1.00394 0.85032 0.98982 1.21288 0.88242 1.03098 0.94249 1.23003 1.01466 0.98496 1.00410 1.22821 1.01232 0.91805 1.06026 0.92593 0.92950 0.92234 0.93052 0.92315 0.92415 0.92302 0.92951 0.93057 0.85015 0.83181 0.82816 0.84354 0.91107 0.94390 0.90824 0.89175 0.91526 0.89933 0.90106 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.28 13.96 55.43 0.77 -24.51 16 2 C 0.08 2.13 4.26 -17.82 -0.08 2.05 16 3 Si 0.86 20.32 24.09 -169.99 -4.10 16.23 16 4 H -0.28 -6.48 7.10 56.52 0.40 -6.08 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.25 -5.62 5.80 56.52 0.33 -5.29 16 7 C -0.48 -12.03 6.05 -34.44 -0.21 -12.24 16 8 H 0.08 2.15 7.86 -52.49 -0.41 1.73 16 9 C -0.03 -0.64 0.39 -155.66 -0.06 -0.70 16 10 C 0.09 1.77 4.85 -3.82 -0.02 1.76 16 11 N -0.52 -9.71 4.48 -239.07 -1.07 -10.78 16 12 C 0.06 1.10 4.07 -4.59 -0.02 1.08 16 13 C -0.10 -1.44 6.42 -25.35 -0.16 -1.60 16 14 C 0.08 1.08 5.23 -4.59 -0.02 1.06 16 15 N -0.49 -7.61 4.27 -175.12 -0.75 -8.35 16 16 C 0.16 2.23 4.37 -83.61 -0.37 1.86 16 17 C -0.21 -2.76 9.01 -39.25 -0.35 -3.11 16 18 C 0.11 1.32 11.17 -17.60 -0.20 1.13 16 19 N -0.50 -6.76 10.36 -13.35 -0.14 -6.90 16 20 C 0.10 1.26 11.17 -17.61 -0.20 1.07 16 21 C -0.16 -2.11 10.06 -39.25 -0.39 -2.50 16 22 C 0.07 1.14 4.10 -6.45 -0.03 1.12 16 23 C 0.06 1.17 3.54 -6.45 -0.02 1.15 16 24 C -0.20 -3.97 8.20 -26.69 -0.22 -4.19 16 25 C -0.18 -3.50 8.57 -26.69 -0.23 -3.73 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.05 0.96 8.10 -51.93 -0.42 0.54 16 28 H 0.06 1.26 4.66 -51.93 -0.24 1.02 16 29 H 0.05 1.01 7.17 -51.93 -0.37 0.63 16 30 H 0.06 0.99 5.16 -51.93 -0.27 0.72 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.67 7.57 -51.92 -0.39 0.28 16 34 H 0.05 0.74 7.16 -51.93 -0.37 0.37 16 35 H 0.13 1.59 7.00 -52.49 -0.37 1.22 16 36 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16 37 H 0.15 1.42 8.06 -52.48 -0.42 1.00 16 38 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.07 1.24 7.57 -51.93 -0.39 0.85 16 40 H 0.04 0.61 6.88 -51.93 -0.36 0.25 16 41 H 0.07 1.66 5.85 -51.93 -0.30 1.35 16 42 H 0.09 2.12 5.12 -51.93 -0.27 1.85 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 45 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 46 H 0.07 1.23 6.83 -51.93 -0.35 0.87 16 LS Contribution 338.74 15.07 5.10 5.10 Total: -1.00 -27.49 338.74 -9.86 -37.35 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -7.11 Total: 7.66 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -2.57 Total: -15.81 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -1.18 Total: -50.53 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.10 Total: 16.23 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.49 -9.86 -37.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602850482.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.307 kcal (2) G-P(sol) polarization free energy of solvation -27.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.47 seconds